Wall clock time and date at job start Sun Mar 29 2020 22:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47103 * 2 1 4 4 C 1.52997 * 109.47482 * 120.00247 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 7 7 C 1.52997 * 109.46817 * 60.00194 * 6 5 4 8 8 C 1.52999 * 109.46961 * 240.00608 * 2 1 3 9 9 H 1.09002 * 109.46716 * 299.99630 * 8 2 1 10 10 C 1.53002 * 109.47628 * 59.99659 * 8 2 1 11 11 S 1.81398 * 109.47077 * 185.00247 * 10 8 2 12 12 C 1.81400 * 102.99652 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47124 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.47250 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00146 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99927 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00377 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99871 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47001 * 60.00044 * 18 16 14 20 20 H 1.48498 * 109.47185 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46904 * 300.00064 * 18 16 14 22 22 H 1.09001 * 109.47066 * 299.99922 * 1 2 3 23 23 H 1.08996 * 109.47747 * 59.99588 * 1 2 3 24 24 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 26 26 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 27 27 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 28 28 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 29 29 H 1.08993 * 109.47662 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47075 * 300.00932 * 6 5 4 31 31 H 1.09002 * 109.47153 * 60.00231 * 7 6 5 32 32 H 1.09001 * 109.47289 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.46463 * 305.00112 * 10 8 2 34 34 H 1.08993 * 109.46613 * 65.00049 * 10 8 2 35 35 H 1.08994 * 109.47423 * 299.99861 * 12 11 10 36 36 H 1.09002 * 109.47600 * 60.00215 * 12 11 10 37 37 H 1.09000 * 109.47436 * 300.00173 * 13 12 11 38 38 H 1.09002 * 109.47123 * 60.00253 * 13 12 11 39 39 H 0.97000 * 120.00400 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2494 6 6 4.0805 -1.4415 0.0001 7 6 3.5704 -0.7203 -1.2490 8 6 2.0399 -0.7211 -1.2493 9 1 1.6765 -1.7488 -1.2493 10 6 1.5298 0.0001 -2.4986 11 16 2.0097 -0.9367 -3.9759 12 6 1.3267 0.0587 -5.3299 13 6 1.6522 -0.6084 -6.6678 14 6 1.0842 0.2182 -7.7926 15 1 0.5454 1.1286 -7.5751 16 6 1.2534 -0.1872 -9.0995 17 7 1.9100 -1.2954 -9.3646 18 14 0.5500 0.8378 -10.4939 19 1 1.1477 2.1969 -10.4595 20 1 0.8659 0.1903 -11.7924 21 1 -0.9232 0.9409 -10.3380 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6767 -1.7490 1.2492 26 1 1.6767 -0.2074 2.1392 27 1 3.9329 0.3071 1.2496 28 1 3.9334 -1.2349 2.1391 29 1 5.1704 -1.4415 0.0004 30 1 3.7175 -2.4693 -0.0002 31 1 3.9334 0.3075 -1.2488 32 1 3.9337 -1.2340 -2.1391 33 1 0.4435 0.0783 -2.4548 34 1 1.9645 0.9986 -2.5444 35 1 0.2455 0.1351 -5.2152 36 1 1.7660 1.0560 -5.3053 37 1 2.7335 -0.6844 -6.7824 38 1 1.2132 -1.6058 -6.6928 39 1 2.0287 -1.5808 -10.2840 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596375645.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:13 Heat of formation + Delta-G solvation = -55.124717 kcal Electronic energy + Delta-G solvation = -15251.999092 eV Core-core repulsion = 12897.536088 eV Total energy + Delta-G solvation = -2354.463004 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.140 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.13906 -33.65156 -33.16301 -32.07347 -30.82289 -27.42244 -25.84145 -25.06557 -22.05083 -21.30312 -20.66456 -19.73893 -16.48419 -15.62730 -15.31207 -14.83605 -14.49540 -14.41905 -14.23250 -13.80529 -13.59825 -13.00296 -12.62194 -12.42153 -12.03773 -11.89699 -11.72146 -11.55200 -11.39351 -11.07916 -10.98613 -10.92552 -10.60384 -10.49397 -10.18891 -10.09495 -10.05869 -9.58307 -9.32674 -9.00824 -8.39832 -7.03921 -6.03826 -4.08384 2.29590 3.31485 3.32637 3.36374 3.39296 4.43341 4.52266 4.60922 4.65910 4.96188 5.04865 5.24004 5.28865 5.31471 5.38917 5.42542 5.48615 5.54966 5.64989 5.70906 5.80530 5.84947 5.94865 5.99245 6.04470 6.10206 6.12651 6.17390 6.23696 6.26642 6.40395 6.48671 6.77846 7.59400 7.69122 7.92772 8.30369 8.96486 9.55275 11.06968 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.051655 B = 0.003972 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.926839 B = 7048.307577 C = 7396.911110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.083 4.083 3 H 0.069 0.931 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.062 4.062 9 H 0.077 0.923 10 C -0.087 4.087 11 S -0.289 6.289 12 C -0.059 4.059 13 C 0.038 3.962 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 1.925 20.687 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.104 4.104 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.081 4.081 9 H 0.095 0.905 10 C -0.235 4.235 11 S -0.061 6.061 12 C -0.207 4.207 13 C -0.001 4.001 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.340 0.860 20.482 20.544 hybrid contribution -1.088 1.709 -0.817 2.184 sum 0.252 2.569 19.665 19.834 Atomic orbital electron populations 1.21917 0.95346 1.02006 1.01604 1.21163 0.95419 0.99541 0.94237 0.91268 1.21575 0.95544 1.00689 0.97165 1.21548 0.95665 1.00681 0.97835 1.21537 1.00085 0.99480 0.94551 1.21661 0.94518 1.00987 0.98280 1.20946 0.95839 0.99609 0.91714 0.90471 1.23467 1.03303 1.01214 0.95518 1.86835 1.76910 1.40632 1.01731 1.23653 1.01174 0.99736 0.96160 1.18891 0.97890 0.96156 0.87118 1.21078 1.35773 1.08624 0.90729 0.92572 1.25008 0.95192 0.95171 0.98854 1.69961 1.40904 1.22292 1.19804 0.86590 0.79522 0.80315 0.81178 1.20161 1.21158 1.20166 0.92923 0.92286 0.92561 0.91966 0.92217 0.92159 0.92366 0.92144 0.92066 0.92141 0.90396 0.90393 0.90924 0.91627 0.91604 0.95578 0.95593 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.85 37.15 0.33 -1.10 16 2 C -0.08 -0.82 2.25 -90.63 -0.20 -1.03 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.11 -0.98 5.20 -26.73 -0.14 -1.12 16 5 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 6 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 7 C -0.12 -1.38 5.03 -26.70 -0.13 -1.52 16 8 C -0.06 -0.74 1.72 -90.59 -0.16 -0.89 16 9 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 10 C -0.09 -1.23 5.17 37.16 0.19 -1.03 16 11 S -0.29 -5.43 20.55 -107.50 -2.21 -7.64 16 12 C -0.06 -1.28 5.88 37.16 0.22 -1.06 16 13 C 0.04 1.01 4.98 -27.88 -0.14 0.87 16 14 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 18 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.59 6.32 -51.93 -0.33 0.26 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.08 7.14 -51.93 -0.37 0.71 16 33 H 0.08 1.06 6.17 -51.92 -0.32 0.74 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 316.13 15.07 4.76 4.76 Total: -1.00 -29.35 316.13 -9.81 -39.16 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -7.32 Total: -3.70 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -0.76 Total: -22.96 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.74 Total: -26.22 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -5.43 SS G_CDS: -2.21 Total: -7.64 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.35 -9.81 -39.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596375645.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.961 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds