Wall clock time and date at job start Sun Mar 29 2020 22:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47103 * 2 1 4 4 C 1.52997 * 109.47482 * 120.00247 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 7 7 C 1.52997 * 109.46817 * 60.00194 * 6 5 4 8 8 C 1.52999 * 109.46961 * 240.00608 * 2 1 3 9 9 H 1.09002 * 109.46716 * 299.99630 * 8 2 1 10 10 C 1.53002 * 109.47628 * 59.99659 * 8 2 1 11 11 S 1.81398 * 109.47077 * 185.00247 * 10 8 2 12 12 C 1.81400 * 102.99652 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47124 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.47250 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00146 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99927 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00377 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99871 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47001 * 60.00044 * 18 16 14 20 20 H 1.48498 * 109.47185 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46904 * 300.00064 * 18 16 14 22 22 H 1.09001 * 109.47066 * 299.99922 * 1 2 3 23 23 H 1.08996 * 109.47747 * 59.99588 * 1 2 3 24 24 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 26 26 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 27 27 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 28 28 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 29 29 H 1.08993 * 109.47662 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47075 * 300.00932 * 6 5 4 31 31 H 1.09002 * 109.47153 * 60.00231 * 7 6 5 32 32 H 1.09001 * 109.47289 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.46463 * 305.00112 * 10 8 2 34 34 H 1.08993 * 109.46613 * 65.00049 * 10 8 2 35 35 H 1.08994 * 109.47423 * 299.99861 * 12 11 10 36 36 H 1.09002 * 109.47600 * 60.00215 * 12 11 10 37 37 H 1.09000 * 109.47436 * 300.00173 * 13 12 11 38 38 H 1.09002 * 109.47123 * 60.00253 * 13 12 11 39 39 H 0.97000 * 120.00400 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2494 6 6 4.0805 -1.4415 0.0001 7 6 3.5704 -0.7203 -1.2490 8 6 2.0399 -0.7211 -1.2493 9 1 1.6765 -1.7488 -1.2493 10 6 1.5298 0.0001 -2.4986 11 16 2.0097 -0.9367 -3.9759 12 6 1.3267 0.0587 -5.3299 13 6 1.6522 -0.6084 -6.6678 14 6 1.0842 0.2182 -7.7926 15 1 0.5454 1.1286 -7.5751 16 6 1.2534 -0.1872 -9.0995 17 7 1.9100 -1.2954 -9.3646 18 14 0.5500 0.8378 -10.4939 19 1 1.1477 2.1969 -10.4595 20 1 0.8659 0.1903 -11.7924 21 1 -0.9232 0.9409 -10.3380 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6767 -1.7490 1.2492 26 1 1.6767 -0.2074 2.1392 27 1 3.9329 0.3071 1.2496 28 1 3.9334 -1.2349 2.1391 29 1 5.1704 -1.4415 0.0004 30 1 3.7175 -2.4693 -0.0002 31 1 3.9334 0.3075 -1.2488 32 1 3.9337 -1.2340 -2.1391 33 1 0.4435 0.0783 -2.4548 34 1 1.9645 0.9986 -2.5444 35 1 0.2455 0.1351 -5.2152 36 1 1.7660 1.0560 -5.3053 37 1 2.7335 -0.6844 -6.7824 38 1 1.2132 -1.6058 -6.6928 39 1 2.0287 -1.5808 -10.2840 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596375645.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:12 Heat of formation + Delta-G solvation = -68.866935 kcal Electronic energy + Delta-G solvation = -15252.594999 eV Core-core repulsion = 12897.536088 eV Total energy + Delta-G solvation = -2355.058911 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.140 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.99102 -35.78460 -34.00293 -32.97621 -32.87634 -28.36295 -27.36715 -26.49701 -23.35212 -22.66718 -21.70021 -20.61574 -18.67923 -17.04757 -16.52874 -16.19699 -15.93156 -15.45186 -15.32649 -15.04192 -14.85812 -14.38679 -14.02669 -13.62215 -13.29954 -13.05613 -12.98640 -12.82977 -12.69273 -12.44125 -12.29880 -12.17225 -11.92131 -11.74405 -11.68729 -11.35284 -11.29415 -11.01388 -10.79809 -10.61248 -10.59096 -8.57914 -8.23816 -6.37978 0.83055 1.40240 1.43745 1.52001 1.82755 2.39914 3.09068 3.64211 3.74071 3.83997 4.08335 4.24654 4.26403 4.35241 4.39013 4.42198 4.52182 4.59576 4.64047 4.69297 4.78895 4.86528 4.87262 4.97301 5.07136 5.18391 5.21669 5.29289 5.33648 5.36349 5.39112 5.46076 5.48513 5.50764 5.64259 5.72480 6.10143 6.76030 7.31590 8.87865 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.051655 B = 0.003972 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.926839 B = 7048.307577 C = 7396.911110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.078 4.078 3 H 0.074 0.926 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.116 4.116 8 C -0.057 4.057 9 H 0.067 0.933 10 C -0.070 4.070 11 S -0.318 6.318 12 C -0.050 4.050 13 C 0.045 3.955 14 C -0.546 4.546 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.973 3.027 19 H -0.264 1.264 20 H -0.282 1.282 21 H -0.265 1.265 22 H 0.068 0.932 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.072 0.928 37 H -0.005 1.005 38 H -0.005 1.005 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.076 3.454 22.209 22.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.098 4.098 3 H 0.092 0.908 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.155 4.155 7 C -0.154 4.154 8 C -0.077 4.077 9 H 0.085 0.915 10 C -0.218 4.218 11 S -0.090 6.090 12 C -0.198 4.198 13 C 0.007 3.993 14 C -0.585 4.585 15 H 0.085 0.915 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.796 3.204 19 H -0.189 1.189 20 H -0.207 1.207 21 H -0.189 1.189 22 H 0.087 0.913 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.014 0.986 38 H 0.013 0.987 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.553 2.395 22.013 22.150 hybrid contribution -0.809 1.189 -1.200 1.873 sum -0.256 3.584 20.813 21.121 Atomic orbital electron populations 1.21919 0.94860 1.02007 1.02078 1.21133 0.95769 0.99530 0.93349 0.90772 1.21573 0.95516 1.00631 0.97023 1.21538 0.95621 1.00855 0.97415 1.21521 1.00435 0.99189 0.94324 1.21630 0.94474 1.01055 0.98263 1.20945 0.95889 0.99114 0.91726 0.91504 1.23589 1.03999 1.00909 0.93302 1.86933 1.77050 1.41565 1.03448 1.23296 1.01763 0.99764 0.95001 1.18666 0.95476 0.95017 0.90147 1.21534 1.36015 1.09205 0.91738 0.91538 1.26041 0.95318 0.96360 1.01966 1.70109 1.42199 1.24203 1.20620 0.85389 0.79129 0.78664 0.77191 1.18916 1.20738 1.18925 0.91315 0.92968 0.92820 0.92155 0.90552 0.91736 0.90996 0.91639 0.92460 0.91863 0.93017 0.89414 0.90070 0.90901 0.90899 0.98637 0.98660 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.85 71.98 0.64 -1.84 16 2 C -0.08 -1.34 2.25 -10.80 -0.02 -1.36 16 3 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.11 -1.60 5.20 30.59 0.16 -1.44 16 5 C -0.12 -1.72 5.92 30.60 0.18 -1.53 16 6 C -0.12 -2.16 5.92 30.59 0.18 -1.98 16 7 C -0.12 -2.67 5.03 30.61 0.15 -2.52 16 8 C -0.06 -1.30 1.72 -10.77 -0.02 -1.31 16 9 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 10 C -0.07 -1.90 5.17 71.98 0.37 -1.53 16 11 S -0.32 -12.11 20.55 -56.49 -1.16 -13.27 16 12 C -0.05 -2.20 5.88 71.98 0.42 -1.77 16 13 C 0.05 2.50 4.98 29.85 0.15 2.65 16 14 C -0.55 -31.49 9.11 25.60 0.23 -31.26 16 15 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 16 C 0.00 0.10 5.46 84.66 0.46 0.56 16 17 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 18 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 21 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 22 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.05 0.92 6.32 -2.39 -0.02 0.91 16 24 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 1.45 7.14 -2.39 -0.02 1.43 16 33 H 0.09 2.25 6.17 -2.39 -0.01 2.23 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 37 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -64.10 316.13 5.03 -59.07 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.97 Total: 8.71 kcal Atomic # 6 Polarization: -46.25 SS G_CDS: 2.91 Total: -43.35 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.28 Total: -57.43 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -12.11 SS G_CDS: -1.16 Total: -13.27 kcal Total: -64.10 5.03 -59.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596375645.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.796 kcal (2) G-P(sol) polarization free energy of solvation -64.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds