Wall clock time and date at job start Sun Mar 29 2020 22:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00155 * 2 1 4 4 H 1.48495 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47050 * 300.00510 * 3 2 1 6 6 H 1.48503 * 109.46609 * 60.00127 * 3 2 1 7 7 C 1.37885 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99288 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00373 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47313 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47310 * 179.97438 * 10 9 7 12 12 C 1.46900 * 111.00216 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47010 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.47430 * 304.99933 * 13 12 11 15 15 O 1.42907 * 109.47374 * 65.00169 * 13 12 11 16 16 C 1.52999 * 109.46955 * 184.99655 * 13 12 11 17 17 N 1.46904 * 109.47093 * 180.02562 * 16 13 12 18 18 C 1.48566 * 110.99843 * 170.00382 * 17 16 13 19 19 C 1.54380 * 104.59262 * 200.95774 * 18 17 16 20 20 C 1.54264 * 105.06204 * 23.85280 * 19 18 17 21 21 C 1.48556 * 111.00162 * 54.58137 * 17 16 13 22 22 H 0.96993 * 119.99788 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47368 * 59.99474 * 9 7 2 24 24 H 1.09000 * 109.46716 * 300.00093 * 9 7 2 25 25 H 1.08999 * 109.47491 * 60.00144 * 10 9 7 26 26 H 1.09000 * 109.47151 * 299.99637 * 10 9 7 27 27 H 1.00904 * 110.99874 * 56.04150 * 11 10 9 28 28 H 1.08999 * 109.47335 * 59.99763 * 12 11 10 29 29 H 1.09005 * 109.46708 * 299.99768 * 12 11 10 30 30 H 0.96704 * 114.00097 * 59.99694 * 15 13 12 31 31 H 1.09001 * 109.47259 * 59.99955 * 16 13 12 32 32 H 1.08998 * 109.47275 * 299.99831 * 16 13 12 33 33 H 1.08999 * 110.41049 * 319.73313 * 18 17 16 34 34 H 1.08999 * 110.41330 * 82.18261 * 18 17 16 35 35 H 1.09005 * 110.32530 * 142.74561 * 19 18 17 36 36 H 1.08995 * 110.32857 * 264.95872 * 19 18 17 37 37 H 1.08995 * 110.32483 * 241.10627 * 20 19 18 38 38 H 1.09000 * 110.32872 * 118.89474 * 20 19 18 39 39 H 1.08997 * 110.41166 * 277.81957 * 21 17 16 40 40 H 1.09001 * 110.40893 * 40.14601 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9343 0.0001 12 6 2.4353 -6.0760 0.0007 13 6 1.6352 -7.3800 0.0007 14 1 0.9424 -7.3813 0.8422 15 8 0.9012 -7.4886 -1.2207 16 6 2.5933 -8.5662 0.1270 17 7 1.8251 -9.8184 0.1264 18 6 2.7246 -10.9947 0.0061 19 6 1.8151 -12.1281 -0.5150 20 6 0.6471 -11.4112 -1.2232 21 6 0.9490 -9.9049 -1.0702 22 1 -0.4849 0.8400 0.0004 23 1 0.6240 -2.5568 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 2.8719 -3.6044 0.8894 26 1 2.8719 -3.6044 -0.8905 27 1 0.8740 -4.9846 -0.7810 28 1 3.0632 -6.0345 0.8907 29 1 3.0632 -6.0354 -0.8893 30 1 1.4551 -7.4937 -2.0133 31 1 3.1532 -8.4834 1.0585 32 1 3.2860 -8.5649 -0.7146 33 1 3.5239 -10.7907 -0.7063 34 1 3.1393 -11.2572 0.9793 35 1 2.3588 -12.7550 -1.2219 36 1 1.4434 -12.7275 0.3159 37 1 -0.2979 -11.6588 -0.7397 38 1 0.6173 -11.6862 -2.2775 39 1 0.0269 -9.3470 -0.9074 40 1 1.4698 -9.5285 -1.9507 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600737305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:05 Heat of formation + Delta-G solvation = -56.971270 kcal Electronic energy + Delta-G solvation = -17414.207870 eV Core-core repulsion = 14649.204674 eV Total energy + Delta-G solvation = -2765.003196 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.58489 -37.38188 -35.23985 -32.94273 -32.49995 -30.20583 -28.93757 -28.04002 -24.95016 -23.17597 -21.69694 -21.21139 -20.84629 -20.36610 -16.81096 -16.59650 -16.22787 -15.78678 -15.52626 -14.94123 -14.41773 -14.30618 -13.96887 -13.43572 -13.34554 -12.64040 -12.51542 -12.42623 -12.10499 -11.94213 -11.69782 -11.43770 -11.18432 -11.02796 -10.94658 -10.82897 -10.67938 -10.54005 -10.00033 -9.85269 -9.30105 -9.11190 -8.65359 -8.34719 -7.82075 -5.98734 -4.01488 3.31597 3.38773 3.42713 3.74490 4.27773 4.42103 4.46445 4.50600 4.70557 4.79899 5.03228 5.09420 5.17193 5.22646 5.35933 5.37088 5.43310 5.49626 5.54315 5.57597 5.64015 5.81479 5.83684 5.94977 6.09403 6.18560 6.32563 6.41465 6.68973 6.83220 6.98041 7.46952 7.57804 7.74426 7.84276 7.98419 8.10216 8.44486 9.06084 9.62208 11.12753 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.077185 B = 0.003231 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.676386 B = 8662.862185 C = 8885.394114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.687 5.687 12 C 0.031 3.969 13 C 0.110 3.890 14 H 0.116 0.884 15 O -0.554 6.554 16 C 0.014 3.986 17 N -0.508 5.508 18 C 0.029 3.971 19 C -0.125 4.125 20 C -0.132 4.132 21 C 0.043 3.957 22 H 0.260 0.740 23 H 0.014 0.986 24 H 0.026 0.974 25 H 0.057 0.943 26 H 0.013 0.987 27 H 0.343 0.657 28 H 0.076 0.924 29 H 0.022 0.978 30 H 0.365 0.635 31 H 0.086 0.914 32 H 0.035 0.965 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.101 0.899 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.052 -22.716 -2.692 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.318 5.318 12 C -0.100 4.100 13 C 0.050 3.950 14 H 0.133 0.867 15 O -0.359 6.359 16 C -0.115 4.115 17 N -0.232 5.232 18 C -0.099 4.099 19 C -0.163 4.163 20 C -0.171 4.171 21 C -0.085 4.085 22 H 0.070 0.930 23 H 0.032 0.968 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.031 0.969 27 H 0.161 0.839 28 H 0.094 0.906 29 H 0.040 0.960 30 H 0.212 0.788 31 H 0.104 0.896 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.017 -22.605 -1.090 22.985 hybrid contribution 1.943 1.075 -1.992 2.983 sum 5.960 -21.530 -3.082 22.551 Atomic orbital electron populations 1.69986 1.06027 1.26489 1.50659 1.25016 0.94850 0.99237 0.95320 0.86528 0.80033 0.83783 0.77594 1.19804 1.21029 1.20944 1.21214 0.92983 0.91034 1.50832 0.92754 1.19066 0.94016 0.90377 0.97798 1.22168 0.96991 0.88598 0.98460 1.60508 1.19331 1.01622 1.50364 1.22546 0.95018 0.91829 1.00593 1.22053 0.93825 0.90934 0.88153 0.86664 1.86733 1.37668 1.95999 1.15469 1.22963 0.95814 0.90888 1.01828 1.65414 1.17314 1.01177 1.39273 1.23157 0.94829 0.91290 1.00602 1.22283 0.96580 0.97339 1.00070 1.22427 0.98829 0.95688 1.00121 1.23270 0.99015 0.95143 0.91031 0.93022 0.96774 0.95596 0.92446 0.96855 0.83917 0.90593 0.95990 0.78798 0.89583 0.94651 0.94158 0.90316 0.91673 0.91159 0.91170 0.91709 0.88109 0.94238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.66 5.23 -27.89 -0.15 0.52 16 10 C 0.07 1.42 5.62 -3.83 -0.02 1.39 16 11 N -0.69 -12.50 6.50 -113.78 -0.74 -13.24 16 12 C 0.03 0.43 5.36 -3.83 -0.02 0.41 16 13 C 0.11 1.32 3.33 -26.73 -0.09 1.23 16 14 H 0.12 1.62 8.14 -51.93 -0.42 1.20 16 15 O -0.55 -6.55 9.19 -35.23 -0.32 -6.88 16 16 C 0.01 0.15 4.91 -3.82 -0.02 0.13 16 17 N -0.51 -5.36 5.49 -229.96 -1.26 -6.63 16 18 C 0.03 0.26 6.49 -2.18 -0.01 0.24 16 19 C -0.12 -0.97 7.00 -25.35 -0.18 -1.15 16 20 C -0.13 -1.12 7.00 -25.34 -0.18 -1.29 16 21 C 0.04 0.43 4.64 -2.18 -0.01 0.42 16 22 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.34 6.24 8.29 -39.29 -0.33 5.92 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.37 3.31 8.34 45.56 0.38 3.69 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.34 7.88 -51.93 -0.41 -0.07 16 33 H 0.04 0.34 7.82 -51.93 -0.41 -0.07 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 1.18 6.79 -51.93 -0.35 0.82 16 40 H 0.04 0.37 6.86 -51.93 -0.36 0.02 16 LS Contribution 317.35 15.07 4.78 4.78 Total: -1.00 -31.00 317.35 -9.42 -40.42 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.51 Total: 3.13 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -1.09 Total: -11.89 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -1.27 Total: -46.41 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.32 Total: -6.88 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.00 -9.42 -40.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600737305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.551 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds