Wall clock time and date at job start Sun Mar 29 2020 22:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00155 * 2 1 4 4 H 1.48495 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47050 * 300.00510 * 3 2 1 6 6 H 1.48503 * 109.46609 * 60.00127 * 3 2 1 7 7 C 1.37885 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99288 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00373 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47313 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47310 * 179.97438 * 10 9 7 12 12 C 1.46900 * 111.00216 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47010 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.47430 * 304.99933 * 13 12 11 15 15 O 1.42907 * 109.47374 * 65.00169 * 13 12 11 16 16 C 1.52999 * 109.46955 * 184.99655 * 13 12 11 17 17 N 1.46904 * 109.47093 * 180.02562 * 16 13 12 18 18 C 1.48566 * 110.99843 * 170.00382 * 17 16 13 19 19 C 1.54380 * 104.59262 * 200.95774 * 18 17 16 20 20 C 1.54264 * 105.06204 * 23.85280 * 19 18 17 21 21 C 1.48556 * 111.00162 * 54.58137 * 17 16 13 22 22 H 0.96993 * 119.99788 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47368 * 59.99474 * 9 7 2 24 24 H 1.09000 * 109.46716 * 300.00093 * 9 7 2 25 25 H 1.08999 * 109.47491 * 60.00144 * 10 9 7 26 26 H 1.09000 * 109.47151 * 299.99637 * 10 9 7 27 27 H 1.00904 * 110.99874 * 56.04150 * 11 10 9 28 28 H 1.08999 * 109.47335 * 59.99763 * 12 11 10 29 29 H 1.09005 * 109.46708 * 299.99768 * 12 11 10 30 30 H 0.96704 * 114.00097 * 59.99694 * 15 13 12 31 31 H 1.09001 * 109.47259 * 59.99955 * 16 13 12 32 32 H 1.08998 * 109.47275 * 299.99831 * 16 13 12 33 33 H 1.08999 * 110.41049 * 319.73313 * 18 17 16 34 34 H 1.08999 * 110.41330 * 82.18261 * 18 17 16 35 35 H 1.09005 * 110.32530 * 142.74561 * 19 18 17 36 36 H 1.08995 * 110.32857 * 264.95872 * 19 18 17 37 37 H 1.08995 * 110.32483 * 241.10627 * 20 19 18 38 38 H 1.09000 * 110.32872 * 118.89474 * 20 19 18 39 39 H 1.08997 * 110.41166 * 277.81957 * 21 17 16 40 40 H 1.09001 * 110.40893 * 40.14601 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9343 0.0001 12 6 2.4353 -6.0760 0.0007 13 6 1.6352 -7.3800 0.0007 14 1 0.9424 -7.3813 0.8422 15 8 0.9012 -7.4886 -1.2207 16 6 2.5933 -8.5662 0.1270 17 7 1.8251 -9.8184 0.1264 18 6 2.7246 -10.9947 0.0061 19 6 1.8151 -12.1281 -0.5150 20 6 0.6471 -11.4112 -1.2232 21 6 0.9490 -9.9049 -1.0702 22 1 -0.4849 0.8400 0.0004 23 1 0.6240 -2.5568 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 2.8719 -3.6044 0.8894 26 1 2.8719 -3.6044 -0.8905 27 1 0.8740 -4.9846 -0.7810 28 1 3.0632 -6.0345 0.8907 29 1 3.0632 -6.0354 -0.8893 30 1 1.4551 -7.4937 -2.0133 31 1 3.1532 -8.4834 1.0585 32 1 3.2860 -8.5649 -0.7146 33 1 3.5239 -10.7907 -0.7063 34 1 3.1393 -11.2572 0.9793 35 1 2.3588 -12.7550 -1.2219 36 1 1.4434 -12.7275 0.3159 37 1 -0.2979 -11.6588 -0.7397 38 1 0.6173 -11.6862 -2.2775 39 1 0.0269 -9.3470 -0.9074 40 1 1.4698 -9.5285 -1.9507 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600737305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:04 Heat of formation + Delta-G solvation = -81.407274 kcal Electronic energy + Delta-G solvation = -17415.267495 eV Core-core repulsion = 14649.204674 eV Total energy + Delta-G solvation = -2766.062821 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.41744 -38.39222 -36.73663 -34.90927 -33.39112 -31.81436 -29.63734 -29.41191 -26.54951 -24.62142 -22.77018 -22.38104 -21.91291 -21.43007 -18.54559 -17.78542 -17.44117 -16.67567 -16.55134 -16.38046 -16.03355 -15.49990 -15.01690 -14.75419 -14.35221 -14.12845 -13.90525 -13.56017 -13.21590 -13.16835 -12.87636 -12.79708 -12.45343 -12.40725 -12.14884 -12.04453 -11.89332 -11.75365 -11.46811 -11.31747 -11.30123 -10.59741 -10.58451 -9.41167 -9.29182 -8.21347 -6.33467 1.39920 1.40730 1.54046 2.39681 2.89745 3.11952 3.34357 3.52052 3.79088 3.83547 4.04936 4.12815 4.19651 4.24754 4.40363 4.42438 4.50080 4.59223 4.68669 4.71460 4.75100 4.83925 4.93251 5.03387 5.04446 5.14738 5.20616 5.29666 5.36017 5.43048 5.64959 5.76878 5.96547 6.05798 6.13291 6.26594 6.51944 6.77539 6.84366 7.36095 8.91217 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.077185 B = 0.003231 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.676386 B = 8662.862185 C = 8885.394114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.031 3.969 10 C 0.084 3.916 11 N -0.697 5.697 12 C 0.034 3.966 13 C 0.122 3.878 14 H 0.092 0.908 15 O -0.564 6.564 16 C 0.023 3.977 17 N -0.526 5.526 18 C 0.028 3.972 19 C -0.122 4.122 20 C -0.132 4.132 21 C 0.044 3.956 22 H 0.264 0.736 23 H -0.011 1.011 24 H -0.008 1.008 25 H 0.059 0.941 26 H 0.020 0.980 27 H 0.341 0.659 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.378 0.622 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.887 -23.370 -3.182 24.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.007 4.007 10 C -0.044 4.044 11 N -0.328 5.328 12 C -0.096 4.096 13 C 0.063 3.937 14 H 0.110 0.890 15 O -0.370 6.370 16 C -0.106 4.106 17 N -0.251 5.251 18 C -0.099 4.099 19 C -0.160 4.160 20 C -0.170 4.170 21 C -0.083 4.083 22 H 0.073 0.927 23 H 0.008 0.992 24 H 0.011 0.989 25 H 0.077 0.923 26 H 0.038 0.962 27 H 0.159 0.841 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.227 0.773 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.868 -23.287 -1.586 24.067 hybrid contribution 1.318 1.221 -1.846 2.576 sum 7.185 -22.067 -3.432 23.459 Atomic orbital electron populations 1.70124 1.07917 1.27806 1.51412 1.26028 0.95794 1.03547 0.94583 0.85330 0.79020 0.78430 0.77826 1.18441 1.20273 1.20326 1.21647 0.93569 0.92195 1.50920 0.92011 1.18924 0.94345 0.92478 0.94934 1.21782 0.95526 0.88373 0.98759 1.60404 1.20173 1.01681 1.50585 1.22617 0.94652 0.90822 1.01508 1.21786 0.93346 0.90904 0.87680 0.89011 1.86722 1.38355 1.95973 1.15988 1.22834 0.95246 0.89946 1.02595 1.65385 1.18110 1.01801 1.39785 1.23214 0.94859 0.90759 1.01117 1.22293 0.96178 0.97133 1.00386 1.22430 0.98950 0.94684 1.00979 1.23184 0.98084 0.95982 0.91081 0.92703 0.99215 0.98936 0.92286 0.96221 0.84081 0.90095 0.94412 0.77269 0.89148 0.93351 0.93464 0.89959 0.90104 0.91055 0.91690 0.90508 0.90347 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.97 13.29 21.45 0.28 -57.68 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 3 Si 0.97 44.68 29.54 68.60 2.03 46.70 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.54 -31.65 9.11 25.60 0.23 -31.41 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.68 5.23 29.84 0.16 1.84 16 10 C 0.08 3.61 5.62 86.30 0.49 4.10 16 11 N -0.70 -25.28 6.50 -513.90 -3.34 -28.62 16 12 C 0.03 0.90 5.36 86.30 0.46 1.37 16 13 C 0.12 2.85 3.33 30.59 0.10 2.95 16 14 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 15 O -0.56 -12.93 9.19 -148.98 -1.37 -14.30 16 16 C 0.02 0.43 4.91 86.30 0.42 0.85 16 17 N -0.53 -10.40 5.49 -881.47 -4.84 -15.23 16 18 C 0.03 0.43 6.49 86.45 0.56 1.00 16 19 C -0.12 -1.64 7.00 31.49 0.22 -1.42 16 20 C -0.13 -2.04 7.00 31.49 0.22 -1.82 16 21 C 0.04 0.83 4.64 86.45 0.40 1.24 16 22 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 23 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 24 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 25 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.34 12.52 8.29 -89.69 -0.74 11.78 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.38 6.30 8.34 -74.05 -0.62 5.69 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 0.79 7.88 -2.39 -0.02 0.77 16 33 H 0.05 0.67 7.82 -2.39 -0.02 0.65 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.83 6.79 -2.39 -0.02 1.81 16 40 H 0.05 0.79 6.86 -2.39 -0.02 0.77 16 Total: -1.00 -66.68 317.35 -3.86 -70.55 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -0.36 Total: 19.53 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 3.73 Total: -20.94 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -7.89 Total: -101.54 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -1.37 Total: -14.30 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -66.68 -3.86 -70.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600737305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.860 kcal (2) G-P(sol) polarization free energy of solvation -66.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds