Wall clock time and date at job start Sun Mar 29 2020 22:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46952 * 110.99749 * 2 1 4 4 C 1.53053 * 109.36253 * 176.81114 * 3 2 1 5 5 N 1.47005 * 109.37769 * 58.40194 * 4 3 2 6 6 C 1.46896 * 111.03378 * 176.82345 * 5 4 3 7 7 C 1.53007 * 109.46885 * 295.34737 * 6 5 4 8 8 C 1.52999 * 109.47025 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47226 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99798 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00163 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00129 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99920 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46658 * 59.99875 * 13 11 9 15 15 H 1.48499 * 109.46846 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47023 * 300.00230 * 13 11 9 17 17 C 1.46956 * 110.85410 * 300.69753 * 5 4 3 18 18 H 1.09009 * 109.48615 * 299.32521 * 17 5 4 19 19 C 1.53002 * 109.48843 * 179.28827 * 17 5 4 20 20 O 1.42901 * 109.46899 * 296.50776 * 19 17 5 21 21 C 1.46955 * 111.00166 * 236.19944 * 2 1 3 22 22 H 1.09001 * 109.46940 * 183.79752 * 1 2 3 23 23 H 1.08998 * 109.47129 * 303.79773 * 1 2 3 24 24 H 1.08995 * 109.47317 * 63.80219 * 1 2 3 25 25 H 1.08998 * 109.49082 * 296.77380 * 3 2 1 26 26 H 1.08996 * 109.49078 * 56.82226 * 3 2 1 27 27 H 1.08998 * 109.48945 * 178.36856 * 4 3 2 28 28 H 1.09001 * 109.49184 * 298.41419 * 4 3 2 29 29 H 1.08994 * 109.47268 * 55.34063 * 6 5 4 30 30 H 1.08995 * 109.47478 * 175.34753 * 6 5 4 31 31 H 1.09004 * 109.46703 * 299.99679 * 7 6 5 32 32 H 1.08995 * 109.47049 * 59.99753 * 7 6 5 33 33 H 1.08994 * 109.47493 * 299.99873 * 8 7 6 34 34 H 1.09004 * 109.47458 * 59.99838 * 8 7 6 35 35 H 0.96995 * 120.00054 * 180.02562 * 12 11 9 36 36 H 1.09002 * 109.47171 * 56.51008 * 19 17 5 37 37 H 1.09002 * 109.47405 * 176.51048 * 19 17 5 38 38 H 0.96697 * 113.99726 * 179.97438 * 20 19 17 39 39 H 1.09001 * 109.48694 * 63.22025 * 21 2 1 40 40 H 1.09006 * 109.48766 * 303.15996 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3291 0.0803 5 7 4.0505 0.5657 -1.0600 6 6 5.5195 0.5652 -1.0603 7 6 6.0299 1.9919 -1.2723 8 6 7.5599 1.9915 -1.2720 9 6 8.0627 3.3967 -1.4814 10 1 7.3611 4.2087 -1.6031 11 6 9.4183 3.6454 -1.5188 12 7 10.2727 2.6565 -1.3712 13 14 10.0415 5.3871 -1.7791 14 1 9.5468 6.2587 -0.6833 15 1 11.5265 5.3867 -1.7787 16 1 9.5465 5.9004 -3.0817 17 6 3.5234 -0.8061 -1.0598 18 1 3.8253 -1.3115 -0.1424 19 6 4.0769 -1.5658 -2.2670 20 8 3.6130 -0.9507 -3.4705 21 6 1.9957 -0.7632 -1.1400 22 1 -0.3633 -1.0254 0.0681 23 1 -0.3633 0.5716 0.8540 24 1 -0.3634 0.4537 -0.9220 25 1 1.6937 1.8773 -0.9174 26 1 1.6009 1.9129 0.8600 27 1 3.9177 2.3448 0.0513 28 1 3.8253 0.8482 1.0108 29 1 5.8829 0.1877 -0.1046 30 1 5.8825 -0.0739 -1.8651 31 1 5.6665 2.3695 -2.2281 32 1 5.6669 2.6310 -0.4675 33 1 7.9230 1.6141 -0.3161 34 1 7.9233 1.3522 -2.0766 35 1 11.2263 2.8316 -1.3971 36 1 5.1664 -1.5417 -2.2432 37 1 3.7356 -2.6005 -2.2330 38 1 3.9260 -1.3808 -4.2780 39 1 1.6938 -0.2821 -2.0703 40 1 1.6013 -1.7790 -1.1110 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703902914.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:39 Heat of formation + Delta-G solvation = -44.821398 kcal Electronic energy + Delta-G solvation = -18193.321889 eV Core-core repulsion = 15428.845551 eV Total energy + Delta-G solvation = -2764.476338 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.57022 -36.59225 -35.71087 -33.48319 -31.69704 -31.07252 -28.49001 -26.33367 -25.84048 -23.93702 -22.39066 -21.43806 -19.88765 -19.48401 -17.27750 -16.36305 -15.99948 -15.63985 -14.86899 -14.73405 -14.47714 -14.23565 -13.90528 -13.64389 -13.38325 -13.08482 -12.37444 -12.11984 -12.06022 -11.74078 -11.53804 -11.28012 -11.17933 -10.93874 -10.76514 -10.61759 -10.43982 -10.25560 -9.82056 -9.48453 -9.26763 -9.01712 -8.39407 -8.29928 -7.93023 -5.95651 -3.97386 3.36605 3.40374 3.43474 3.88637 4.07896 4.37857 4.50428 4.87321 4.95867 5.15319 5.24869 5.34331 5.34928 5.40119 5.45669 5.49339 5.55371 5.67192 5.71747 5.80064 5.82548 6.00816 6.02182 6.12151 6.21841 6.40378 6.77428 6.82438 6.97738 6.99274 7.18905 7.43158 7.49676 7.73060 7.75572 7.88965 8.05140 8.48986 9.09556 9.66301 11.15860 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.034265 B = 0.004785 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.955804 B = 5850.722628 C = 6342.140945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.549 5.549 3 C 0.057 3.943 4 C 0.054 3.946 5 N -0.525 5.525 6 C 0.054 3.946 7 C -0.103 4.103 8 C 0.023 3.977 9 C -0.517 4.517 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.898 5.898 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.087 3.913 18 H 0.056 0.944 19 C 0.080 3.920 20 O -0.555 6.555 21 C 0.068 3.932 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.025 0.975 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.037 0.963 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.013 0.987 34 H 0.014 0.986 35 H 0.260 0.740 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.372 0.628 39 H 0.053 0.947 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.943 -8.868 0.756 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.274 5.274 3 C -0.071 4.071 4 C -0.074 4.074 5 N -0.250 5.250 6 C -0.073 4.073 7 C -0.141 4.141 8 C -0.015 4.015 9 C -0.556 4.556 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.022 4.022 18 H 0.073 0.927 19 C 0.001 3.999 20 O -0.359 6.359 21 C -0.060 4.060 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.218 0.782 39 H 0.072 0.928 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.055 -8.505 1.203 19.096 hybrid contribution 0.774 0.488 -0.461 1.024 sum -16.281 -8.018 0.742 18.164 Atomic orbital electron populations 1.22314 0.87551 1.01875 1.00418 1.62174 1.07533 1.14458 1.43207 1.22191 0.95196 0.88868 1.00807 1.22210 0.93458 0.99784 0.91956 1.62197 1.08905 1.11770 1.42153 1.22362 0.84888 1.00439 0.99633 1.21636 0.99028 0.92725 1.00719 1.19064 0.88503 0.96979 0.96948 1.21223 0.91515 0.93821 1.49004 0.92759 1.25019 0.97072 0.96926 0.95450 1.69956 1.02000 1.31102 1.50663 0.86664 0.77524 0.85078 0.78772 1.20281 1.21336 1.20238 1.21700 0.94497 0.90356 0.95689 0.92667 1.22279 0.98192 0.94227 0.85157 1.86601 1.75561 1.58628 1.15097 1.22054 0.93821 0.97865 0.92295 0.91636 0.91522 0.95676 0.93911 0.90616 0.89329 0.94435 0.95577 0.90923 0.92585 0.93548 0.96886 0.96719 0.93033 0.92641 0.93759 0.78221 0.92829 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.60 60.06 0.58 0.84 16 2 N -0.55 -6.91 4.97 -242.77 -1.21 -8.12 16 3 C 0.06 0.75 5.62 -3.77 -0.02 0.73 16 4 C 0.05 0.82 5.40 -3.74 -0.02 0.80 16 5 N -0.53 -8.55 4.47 -226.45 -1.01 -9.56 16 6 C 0.05 0.98 4.71 -3.82 -0.02 0.96 16 7 C -0.10 -2.23 5.05 -26.73 -0.13 -2.37 16 8 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 9 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 10 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 13 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 C 0.09 1.21 2.35 -67.66 -0.16 1.05 16 18 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 19 C 0.08 0.98 6.35 37.16 0.24 1.22 16 20 O -0.55 -7.23 12.74 -35.23 -0.45 -7.68 16 21 C 0.07 0.87 4.75 -3.77 -0.02 0.85 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 24 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.87 8.13 -51.93 -0.42 0.44 16 27 H 0.09 1.40 6.29 -51.93 -0.33 1.07 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.03 0.48 8.13 -51.93 -0.42 0.06 16 30 H 0.07 1.32 5.73 -51.93 -0.30 1.02 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.05 0.98 6.45 -51.93 -0.33 0.65 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.06 0.72 5.99 -51.93 -0.31 0.40 16 37 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.37 3.18 9.12 45.56 0.42 3.60 16 39 H 0.05 0.78 7.54 -51.93 -0.39 0.39 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 312.66 15.07 4.71 4.71 Total: -1.00 -32.25 312.66 -8.63 -40.88 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.28 Total: -1.38 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -0.11 Total: -9.22 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -1.48 Total: -44.32 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.45 Total: -7.68 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.25 -8.63 -40.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703902914.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.939 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds