Wall clock time and date at job start Sun Mar 29 2020 22:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46952 * 110.99749 * 2 1 4 4 C 1.53053 * 109.36253 * 176.81114 * 3 2 1 5 5 N 1.47005 * 109.37769 * 58.40194 * 4 3 2 6 6 C 1.46896 * 111.03378 * 176.82345 * 5 4 3 7 7 C 1.53007 * 109.46885 * 295.34737 * 6 5 4 8 8 C 1.52999 * 109.47025 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47226 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99798 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00163 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00129 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99920 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46658 * 59.99875 * 13 11 9 15 15 H 1.48499 * 109.46846 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47023 * 300.00230 * 13 11 9 17 17 C 1.46956 * 110.85410 * 300.69753 * 5 4 3 18 18 H 1.09009 * 109.48615 * 299.32521 * 17 5 4 19 19 C 1.53002 * 109.48843 * 179.28827 * 17 5 4 20 20 O 1.42901 * 109.46899 * 296.50776 * 19 17 5 21 21 C 1.46955 * 111.00166 * 236.19944 * 2 1 3 22 22 H 1.09001 * 109.46940 * 183.79752 * 1 2 3 23 23 H 1.08998 * 109.47129 * 303.79773 * 1 2 3 24 24 H 1.08995 * 109.47317 * 63.80219 * 1 2 3 25 25 H 1.08998 * 109.49082 * 296.77380 * 3 2 1 26 26 H 1.08996 * 109.49078 * 56.82226 * 3 2 1 27 27 H 1.08998 * 109.48945 * 178.36856 * 4 3 2 28 28 H 1.09001 * 109.49184 * 298.41419 * 4 3 2 29 29 H 1.08994 * 109.47268 * 55.34063 * 6 5 4 30 30 H 1.08995 * 109.47478 * 175.34753 * 6 5 4 31 31 H 1.09004 * 109.46703 * 299.99679 * 7 6 5 32 32 H 1.08995 * 109.47049 * 59.99753 * 7 6 5 33 33 H 1.08994 * 109.47493 * 299.99873 * 8 7 6 34 34 H 1.09004 * 109.47458 * 59.99838 * 8 7 6 35 35 H 0.96995 * 120.00054 * 180.02562 * 12 11 9 36 36 H 1.09002 * 109.47171 * 56.51008 * 19 17 5 37 37 H 1.09002 * 109.47405 * 176.51048 * 19 17 5 38 38 H 0.96697 * 113.99726 * 179.97438 * 20 19 17 39 39 H 1.09001 * 109.48694 * 63.22025 * 21 2 1 40 40 H 1.09006 * 109.48766 * 303.15996 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3291 0.0803 5 7 4.0505 0.5657 -1.0600 6 6 5.5195 0.5652 -1.0603 7 6 6.0299 1.9919 -1.2723 8 6 7.5599 1.9915 -1.2720 9 6 8.0627 3.3967 -1.4814 10 1 7.3611 4.2087 -1.6031 11 6 9.4183 3.6454 -1.5188 12 7 10.2727 2.6565 -1.3712 13 14 10.0415 5.3871 -1.7791 14 1 9.5468 6.2587 -0.6833 15 1 11.5265 5.3867 -1.7787 16 1 9.5465 5.9004 -3.0817 17 6 3.5234 -0.8061 -1.0598 18 1 3.8253 -1.3115 -0.1424 19 6 4.0769 -1.5658 -2.2670 20 8 3.6130 -0.9507 -3.4705 21 6 1.9957 -0.7632 -1.1400 22 1 -0.3633 -1.0254 0.0681 23 1 -0.3633 0.5716 0.8540 24 1 -0.3634 0.4537 -0.9220 25 1 1.6937 1.8773 -0.9174 26 1 1.6009 1.9129 0.8600 27 1 3.9177 2.3448 0.0513 28 1 3.8253 0.8482 1.0108 29 1 5.8829 0.1877 -0.1046 30 1 5.8825 -0.0739 -1.8651 31 1 5.6665 2.3695 -2.2281 32 1 5.6669 2.6310 -0.4675 33 1 7.9230 1.6141 -0.3161 34 1 7.9233 1.3522 -2.0766 35 1 11.2263 2.8316 -1.3971 36 1 5.1664 -1.5417 -2.2432 37 1 3.7356 -2.6005 -2.2330 38 1 3.9260 -1.3808 -4.2780 39 1 1.6938 -0.2821 -2.0703 40 1 1.6013 -1.7790 -1.1110 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703902914.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:38 Heat of formation + Delta-G solvation = -70.498228 kcal Electronic energy + Delta-G solvation = -18194.435320 eV Core-core repulsion = 15428.845551 eV Total energy + Delta-G solvation = -2765.589769 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.69494 -37.57258 -37.05529 -35.40103 -33.34971 -32.37155 -29.89735 -27.55402 -27.29223 -25.22607 -24.03090 -22.54069 -21.65380 -20.61715 -18.51938 -18.21592 -17.22827 -16.84095 -16.47436 -15.99229 -15.75202 -15.61976 -15.14100 -14.80458 -14.62476 -14.30208 -14.13374 -13.63327 -13.32451 -12.99985 -12.87024 -12.70987 -12.56913 -12.48734 -12.31834 -12.27658 -11.89681 -11.58476 -11.38999 -11.25000 -11.04257 -10.73630 -10.54058 -9.39245 -9.19755 -8.19748 -6.30779 1.39894 1.43280 1.51226 2.41211 2.84802 2.96193 3.13186 3.45604 3.84800 3.95314 4.00785 4.22701 4.26093 4.36458 4.40330 4.47783 4.52643 4.57082 4.63048 4.70321 4.74300 4.80527 4.90372 4.92416 4.99769 5.00597 5.09897 5.16018 5.25671 5.51606 5.73787 5.85372 5.97009 5.98807 6.17945 6.20637 6.29452 6.85134 6.99443 7.38244 8.92053 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.034265 B = 0.004785 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.955804 B = 5850.722628 C = 6342.140945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.557 5.557 3 C 0.064 3.936 4 C 0.052 3.948 5 N -0.534 5.534 6 C 0.067 3.933 7 C -0.087 4.087 8 C 0.028 3.972 9 C -0.544 4.544 10 H 0.057 0.943 11 C 0.001 3.999 12 N -0.933 5.933 13 Si 0.965 3.035 14 H -0.267 1.267 15 H -0.281 1.281 16 H -0.268 1.268 17 C 0.081 3.919 18 H 0.056 0.944 19 C 0.082 3.918 20 O -0.576 6.576 21 C 0.075 3.925 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.024 0.976 25 H 0.032 0.968 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.034 0.966 29 H 0.022 0.978 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.048 0.952 33 H -0.010 1.010 34 H -0.008 1.008 35 H 0.264 0.736 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.390 0.610 39 H 0.036 0.964 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.254 -8.734 0.827 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.282 5.282 3 C -0.064 4.064 4 C -0.076 4.076 5 N -0.259 5.259 6 C -0.060 4.060 7 C -0.124 4.124 8 C -0.009 4.009 9 C -0.582 4.582 10 H 0.075 0.925 11 C -0.197 4.197 12 N -0.573 5.573 13 Si 0.789 3.211 14 H -0.192 1.192 15 H -0.206 1.206 16 H -0.192 1.192 17 C -0.028 4.028 18 H 0.073 0.927 19 C 0.003 3.997 20 O -0.383 6.383 21 C -0.053 4.053 22 H 0.098 0.902 23 H 0.097 0.903 24 H 0.042 0.958 25 H 0.050 0.950 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.053 0.947 29 H 0.040 0.960 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.009 0.991 34 H 0.010 0.990 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.239 0.761 39 H 0.054 0.946 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.391 -8.385 1.264 20.252 hybrid contribution 1.160 0.395 -0.484 1.318 sum -17.231 -7.990 0.780 19.009 Atomic orbital electron populations 1.22389 0.85686 1.03108 1.00900 1.62211 1.09244 1.13804 1.42953 1.22118 0.93574 0.89608 1.01107 1.22236 0.95069 0.98890 0.91424 1.62156 1.07187 1.13738 1.42826 1.22071 0.86692 0.97885 0.99401 1.21366 0.95624 0.95193 1.00262 1.18947 0.91712 0.95590 0.94682 1.21644 0.92225 0.94888 1.49424 0.92470 1.25969 0.97244 1.01677 0.94794 1.70085 1.02438 1.33574 1.51238 0.85505 0.77045 0.79349 0.79182 1.19180 1.20630 1.19243 1.21865 0.95463 0.88911 0.96565 0.92660 1.22278 0.97475 0.95470 0.84466 1.86546 1.75879 1.59667 1.16169 1.21998 0.92820 0.98885 0.91597 0.90174 0.90330 0.95771 0.94991 0.88739 0.90526 0.94738 0.96004 0.90890 0.93473 0.93296 0.99123 0.99001 0.92731 0.93745 0.90621 0.76132 0.94572 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.60 127.69 1.23 1.69 16 2 N -0.56 -12.89 4.97 -921.98 -4.58 -17.47 16 3 C 0.06 1.60 5.62 86.31 0.49 2.09 16 4 C 0.05 1.55 5.40 86.30 0.47 2.02 16 5 N -0.53 -17.23 4.47 -870.37 -3.89 -21.11 16 6 C 0.07 2.48 4.71 86.31 0.41 2.89 16 7 C -0.09 -3.83 5.05 30.60 0.15 -3.67 16 8 C 0.03 1.55 4.97 29.85 0.15 1.70 16 9 C -0.54 -32.00 9.11 25.60 0.23 -31.77 16 10 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 11 C 0.00 0.05 5.46 84.65 0.46 0.51 16 12 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 13 Si 0.96 45.09 29.54 68.60 2.03 47.11 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 17 C 0.08 2.15 2.35 44.92 0.11 2.25 16 18 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 19 C 0.08 1.89 6.35 71.98 0.46 2.35 16 20 O -0.58 -14.31 12.74 -148.98 -1.90 -16.21 16 21 C 0.08 1.78 4.75 86.31 0.41 2.19 16 22 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.08 1.17 8.13 -2.39 -0.02 1.15 16 24 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.03 0.86 8.14 -2.39 -0.02 0.85 16 26 H 0.09 1.98 8.13 -2.39 -0.02 1.96 16 27 H 0.08 2.43 6.29 -2.39 -0.02 2.41 16 28 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.02 0.82 8.13 -2.39 -0.02 0.80 16 30 H 0.07 2.69 5.73 -2.39 -0.01 2.68 16 31 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.05 2.11 6.45 -2.39 -0.02 2.10 16 33 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 34 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 35 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.04 1.12 5.99 -2.39 -0.01 1.11 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.39 6.17 9.12 -74.06 -0.68 5.50 16 39 H 0.04 1.00 7.54 -2.39 -0.02 0.98 16 40 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -68.93 312.66 -3.17 -72.11 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.32 Total: 10.74 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 4.55 Total: -17.76 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -8.18 Total: -95.99 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -1.90 Total: -16.21 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -68.93 -3.17 -72.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703902914.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.608 kcal (2) G-P(sol) polarization free energy of solvation -68.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds