Wall clock time and date at job start Sun Mar 29 2020 22:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47388 * 2 1 4 4 H 1.09004 * 109.46881 * 54.59285 * 3 2 1 5 5 C 1.50698 * 109.47200 * 174.59354 * 3 2 1 6 6 H 1.08007 * 119.99953 * 120.00302 * 5 3 2 7 7 C 1.37870 * 120.00271 * 299.99986 * 5 3 2 8 8 N 1.31519 * 120.00063 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00101 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47257 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47093 * 120.00137 * 9 7 5 12 12 H 1.48507 * 109.47045 * 239.99959 * 9 7 5 13 13 N 1.46900 * 109.46956 * 294.59707 * 3 2 1 14 14 C 1.46904 * 111.00185 * 108.35676 * 13 3 2 15 15 C 1.52995 * 109.47216 * 85.52704 * 14 13 3 16 16 H 1.09005 * 109.50578 * 305.32895 * 15 14 13 17 17 C 1.53098 * 109.50694 * 65.41231 * 15 14 13 18 18 O 1.43010 * 109.26022 * 176.78044 * 17 15 14 19 19 C 1.43014 * 113.74128 * 301.33382 * 18 17 15 20 20 C 1.53097 * 109.25733 * 58.66837 * 19 18 17 21 21 N 1.47011 * 109.50516 * 185.24009 * 15 14 13 22 22 C 1.46894 * 111.00067 * 57.67654 * 21 15 14 23 23 H 1.08993 * 109.47208 * 299.12634 * 1 2 3 24 24 H 1.08997 * 109.46887 * 59.13488 * 1 2 3 25 25 H 1.09004 * 109.47117 * 179.12761 * 1 2 3 26 26 H 1.08998 * 109.47347 * 239.99374 * 2 1 3 27 27 H 1.09005 * 109.47108 * 119.99823 * 2 1 3 28 28 H 0.96998 * 120.00074 * 180.02562 * 8 7 5 29 29 H 1.00901 * 110.99897 * 232.30624 * 13 3 2 30 30 H 1.08999 * 109.46872 * 325.52735 * 14 13 3 31 31 H 1.08995 * 109.47036 * 205.53038 * 14 13 3 32 32 H 1.09004 * 109.50960 * 296.72094 * 17 15 14 33 33 H 1.08998 * 109.50420 * 56.84869 * 17 15 14 34 34 H 1.08999 * 109.50642 * 178.60404 * 19 18 17 35 35 H 1.08994 * 109.50614 * 298.73041 * 19 18 17 36 36 H 1.09002 * 109.51095 * 63.09042 * 20 19 18 37 37 H 1.08998 * 109.50360 * 183.17303 * 20 19 18 38 38 H 1.08997 * 109.47241 * 53.37282 * 22 21 15 39 39 H 1.09001 * 109.47420 * 173.37616 * 22 21 15 40 40 H 1.08998 * 109.47291 * 293.37308 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 0.8376 5 6 3.5411 1.4445 0.1339 6 1 4.1516 1.8873 -0.6393 7 6 4.1350 0.8813 1.2433 8 7 3.3917 0.3417 2.1845 9 14 5.9956 0.8845 1.4095 10 1 6.5974 1.5466 0.2243 11 1 6.3815 1.6228 2.6388 12 1 6.4872 -0.5141 1.4973 13 7 1.6598 2.0963 -1.2593 14 6 0.5999 3.0891 -1.0380 15 6 1.2277 4.4221 -0.6262 16 1 1.8730 4.2688 0.2389 17 6 2.0546 4.9785 -1.7884 18 8 2.5772 6.2591 -1.4250 19 6 1.5705 7.2168 -1.0864 20 6 0.7388 6.6832 0.0830 21 7 0.1661 5.3796 -0.2833 22 6 -0.6864 4.8571 0.7928 23 1 -0.3633 0.5002 0.8977 24 1 -0.3633 0.5272 -0.8821 25 1 -0.3633 -1.0276 -0.0156 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8096 -0.0543 2.9652 29 1 2.4615 2.5166 -1.7050 30 1 -0.0647 2.7409 -0.2473 31 1 0.0308 3.2242 -1.9577 32 1 2.8776 4.2983 -2.0079 33 1 1.4212 5.0806 -2.6695 34 1 2.0435 8.1556 -0.7981 35 1 0.9231 7.3841 -1.9471 36 1 1.3760 6.5667 0.9597 37 1 -0.0648 7.3843 0.3078 38 1 -0.0649 4.5642 1.6390 39 1 -1.3884 5.6293 1.1077 40 1 -1.2387 3.9901 0.4304 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704195294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:41 Heat of formation + Delta-G solvation = -42.753361 kcal Electronic energy + Delta-G solvation = -18908.838525 eV Core-core repulsion = 16144.451863 eV Total energy + Delta-G solvation = -2764.386662 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.61913 -36.59689 -35.36800 -33.00828 -31.44727 -29.94854 -28.41614 -26.96219 -24.82448 -23.97166 -22.85118 -21.67251 -19.94257 -19.25195 -16.89826 -16.18619 -16.05819 -15.29260 -14.82797 -14.66570 -14.61268 -13.72836 -13.68568 -13.22969 -13.09556 -12.58375 -12.23732 -12.14095 -11.90544 -11.65205 -11.32149 -11.14362 -11.09036 -10.88762 -10.75470 -10.68457 -10.29104 -10.15646 -9.66232 -9.49743 -9.32215 -8.87617 -8.45221 -8.22506 -7.30028 -6.05027 -4.13541 3.26298 3.34691 3.38804 3.91536 4.06554 4.38344 4.97167 5.08186 5.14672 5.23803 5.25902 5.44721 5.52074 5.57570 5.66273 5.69666 5.72754 5.87959 6.00631 6.02070 6.16680 6.30617 6.36553 6.45866 6.53861 6.65199 7.03934 7.10467 7.13326 7.14623 7.31858 7.46052 7.54971 7.75108 7.94618 8.21170 8.34807 8.63790 8.98987 9.53073 10.99040 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020690 B = 0.008016 C = 0.006649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.987525 B = 3492.203774 C = 4210.359527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.011 0.989 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.886 5.886 9 Si 0.891 3.109 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.283 1.283 13 N -0.685 5.685 14 C 0.071 3.929 15 C 0.014 3.986 16 H 0.060 0.940 17 C 0.072 3.928 18 O -0.385 6.385 19 C 0.065 3.935 20 C 0.016 3.984 21 N -0.535 5.535 22 C 0.023 3.977 23 H 0.033 0.967 24 H 0.045 0.955 25 H 0.027 0.973 26 H 0.036 0.964 27 H 0.088 0.912 28 H 0.260 0.740 29 H 0.331 0.669 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.030 0.970 39 H 0.062 0.938 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.407 9.731 -4.043 12.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.029 0.971 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.524 5.524 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.209 1.209 13 N -0.316 5.316 14 C -0.060 4.060 15 C -0.096 4.096 16 H 0.078 0.922 17 C -0.005 4.005 18 O -0.304 6.304 19 C -0.013 4.013 20 C -0.113 4.113 21 N -0.261 5.261 22 C -0.125 4.125 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.150 0.850 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.048 0.952 39 H 0.081 0.919 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.916 9.220 -4.464 12.360 hybrid contribution 1.686 0.511 1.533 2.335 sum -5.230 9.731 -2.931 11.430 Atomic orbital electron populations 1.21778 0.99570 0.98751 0.99764 1.21532 0.91579 0.99521 1.01785 1.19183 0.94027 0.91278 0.84721 0.97089 1.21566 0.91710 1.38287 1.05248 0.92401 1.24912 0.98121 0.95004 0.95697 1.69897 1.34728 1.38443 1.09362 0.86545 0.85745 0.77754 0.78026 1.19700 1.21129 1.20920 1.61012 1.13210 1.29599 1.27782 1.22165 0.95588 0.87743 1.00460 1.23230 0.93058 0.94293 0.99022 0.92247 1.22715 0.97990 0.84163 0.95622 1.87990 1.32562 1.21759 1.88060 1.22602 0.90401 0.91936 0.96327 1.22784 0.98369 0.92315 0.97808 1.62269 1.21033 1.02848 1.39931 1.22398 0.96841 1.00562 0.92715 0.94765 0.93617 0.95352 0.94534 0.89351 0.92965 0.85010 0.91229 0.91801 0.88089 0.92557 0.88940 0.92613 0.94111 0.90116 0.95185 0.91873 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.17 37.16 0.34 -2.55 16 2 C -0.11 -2.54 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.25 1.88 -68.87 -0.13 5.12 16 4 H 0.01 0.30 7.30 -51.93 -0.38 -0.07 16 5 C -0.53 -14.18 8.60 -34.44 -0.30 -14.47 16 6 H 0.06 1.53 7.35 -52.48 -0.39 1.15 16 7 C 0.06 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.89 -24.95 11.29 55.43 0.63 -24.33 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.19 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 N -0.69 -14.09 6.12 -107.95 -0.66 -14.75 16 14 C 0.07 1.27 4.46 -3.82 -0.02 1.25 16 15 C 0.01 0.25 2.13 -67.60 -0.14 0.10 16 16 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 17 C 0.07 1.16 6.04 37.21 0.22 1.39 16 18 O -0.39 -6.33 10.83 -35.23 -0.38 -6.72 16 19 C 0.06 0.83 7.01 37.21 0.26 1.09 16 20 C 0.02 0.21 5.64 -3.71 -0.02 0.19 16 21 N -0.54 -8.02 4.80 -234.58 -1.12 -9.15 16 22 C 0.02 0.32 9.01 60.06 0.54 0.86 16 23 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.04 0.89 7.12 -51.93 -0.37 0.52 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.09 2.37 5.94 -51.93 -0.31 2.06 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.33 6.72 5.73 -39.29 -0.23 6.49 16 30 H 0.07 1.29 5.04 -51.93 -0.26 1.03 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.10 1.68 6.58 -51.93 -0.34 1.33 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 38 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 39 H 0.06 0.73 8.04 -51.93 -0.42 0.32 16 40 H 0.07 1.04 6.54 -51.93 -0.34 0.70 16 LS Contribution 305.79 15.07 4.61 4.61 Total: -1.00 -28.25 305.79 -8.23 -36.48 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.80 Total: 5.67 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 0.52 Total: -8.02 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -1.16 Total: -48.22 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.38 Total: -6.72 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.25 -8.23 -36.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704195294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.270 kcal (2) G-P(sol) polarization free energy of solvation -28.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds