Wall clock time and date at job start Sun Mar 29 2020 22:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47388 * 2 1 4 4 H 1.09004 * 109.46881 * 54.59285 * 3 2 1 5 5 C 1.50698 * 109.47200 * 174.59354 * 3 2 1 6 6 H 1.08007 * 119.99953 * 120.00302 * 5 3 2 7 7 C 1.37870 * 120.00271 * 299.99986 * 5 3 2 8 8 N 1.31519 * 120.00063 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00101 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47257 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47093 * 120.00137 * 9 7 5 12 12 H 1.48507 * 109.47045 * 239.99959 * 9 7 5 13 13 N 1.46900 * 109.46956 * 294.59707 * 3 2 1 14 14 C 1.46904 * 111.00185 * 108.35676 * 13 3 2 15 15 C 1.52995 * 109.47216 * 85.52704 * 14 13 3 16 16 H 1.09005 * 109.50578 * 305.32895 * 15 14 13 17 17 C 1.53098 * 109.50694 * 65.41231 * 15 14 13 18 18 O 1.43010 * 109.26022 * 176.78044 * 17 15 14 19 19 C 1.43014 * 113.74128 * 301.33382 * 18 17 15 20 20 C 1.53097 * 109.25733 * 58.66837 * 19 18 17 21 21 N 1.47011 * 109.50516 * 185.24009 * 15 14 13 22 22 C 1.46894 * 111.00067 * 57.67654 * 21 15 14 23 23 H 1.08993 * 109.47208 * 299.12634 * 1 2 3 24 24 H 1.08997 * 109.46887 * 59.13488 * 1 2 3 25 25 H 1.09004 * 109.47117 * 179.12761 * 1 2 3 26 26 H 1.08998 * 109.47347 * 239.99374 * 2 1 3 27 27 H 1.09005 * 109.47108 * 119.99823 * 2 1 3 28 28 H 0.96998 * 120.00074 * 180.02562 * 8 7 5 29 29 H 1.00901 * 110.99897 * 232.30624 * 13 3 2 30 30 H 1.08999 * 109.46872 * 325.52735 * 14 13 3 31 31 H 1.08995 * 109.47036 * 205.53038 * 14 13 3 32 32 H 1.09004 * 109.50960 * 296.72094 * 17 15 14 33 33 H 1.08998 * 109.50420 * 56.84869 * 17 15 14 34 34 H 1.08999 * 109.50642 * 178.60404 * 19 18 17 35 35 H 1.08994 * 109.50614 * 298.73041 * 19 18 17 36 36 H 1.09002 * 109.51095 * 63.09042 * 20 19 18 37 37 H 1.08998 * 109.50360 * 183.17303 * 20 19 18 38 38 H 1.08997 * 109.47241 * 53.37282 * 22 21 15 39 39 H 1.09001 * 109.47420 * 173.37616 * 22 21 15 40 40 H 1.08998 * 109.47291 * 293.37308 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 0.8376 5 6 3.5411 1.4445 0.1339 6 1 4.1516 1.8873 -0.6393 7 6 4.1350 0.8813 1.2433 8 7 3.3917 0.3417 2.1845 9 14 5.9956 0.8845 1.4095 10 1 6.5974 1.5466 0.2243 11 1 6.3815 1.6228 2.6388 12 1 6.4872 -0.5141 1.4973 13 7 1.6598 2.0963 -1.2593 14 6 0.5999 3.0891 -1.0380 15 6 1.2277 4.4221 -0.6262 16 1 1.8730 4.2688 0.2389 17 6 2.0546 4.9785 -1.7884 18 8 2.5772 6.2591 -1.4250 19 6 1.5705 7.2168 -1.0864 20 6 0.7388 6.6832 0.0830 21 7 0.1661 5.3796 -0.2833 22 6 -0.6864 4.8571 0.7928 23 1 -0.3633 0.5002 0.8977 24 1 -0.3633 0.5272 -0.8821 25 1 -0.3633 -1.0276 -0.0156 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8096 -0.0543 2.9652 29 1 2.4615 2.5166 -1.7050 30 1 -0.0647 2.7409 -0.2473 31 1 0.0308 3.2242 -1.9577 32 1 2.8776 4.2983 -2.0079 33 1 1.4212 5.0806 -2.6695 34 1 2.0435 8.1556 -0.7981 35 1 0.9231 7.3841 -1.9471 36 1 1.3760 6.5667 0.9597 37 1 -0.0648 7.3843 0.3078 38 1 -0.0649 4.5642 1.6390 39 1 -1.3884 5.6293 1.1077 40 1 -1.2387 3.9901 0.4304 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704195294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:41 Heat of formation + Delta-G solvation = -63.558104 kcal Electronic energy + Delta-G solvation = -18909.740686 eV Core-core repulsion = 16144.451863 eV Total energy + Delta-G solvation = -2765.288823 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.87978 -38.22776 -36.71903 -34.76771 -33.25129 -31.37492 -29.72214 -28.71306 -26.37666 -25.19518 -24.62173 -23.02973 -21.52650 -20.87262 -18.83604 -17.45635 -17.37039 -16.76686 -16.56918 -16.00212 -15.86952 -15.52605 -14.99982 -14.82754 -14.48946 -14.23375 -13.81068 -13.61472 -13.30188 -13.13725 -13.04764 -12.70731 -12.67169 -12.55404 -12.36730 -12.14183 -12.02015 -11.57829 -11.52499 -11.20391 -10.87295 -10.62244 -10.52235 -9.50029 -9.04772 -8.13398 -6.28965 1.35926 1.38664 1.49277 2.38145 2.71842 2.90759 3.12676 3.69513 3.84220 3.93979 4.03109 4.10509 4.23953 4.34747 4.52153 4.55487 4.58292 4.61269 4.67956 4.71970 4.78189 4.84283 4.86401 4.93069 4.98223 5.08579 5.18307 5.35500 5.52850 5.64835 5.68310 5.84982 5.93633 5.96929 6.15078 6.26679 6.42214 6.77229 7.01889 7.41209 8.89192 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020690 B = 0.008016 C = 0.006649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.987525 B = 3492.203774 C = 4210.359527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 C 0.227 3.773 4 H -0.022 1.022 5 C -0.546 4.546 6 H 0.055 0.945 7 C 0.017 3.983 8 N -0.912 5.912 9 Si 0.951 3.049 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.077 3.923 15 C 0.025 3.975 16 H 0.011 0.989 17 C 0.076 3.924 18 O -0.408 6.408 19 C 0.060 3.940 20 C 0.013 3.987 21 N -0.530 5.530 22 C 0.023 3.977 23 H 0.029 0.971 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.030 0.970 27 H 0.058 0.942 28 H 0.261 0.739 29 H 0.333 0.667 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.073 0.927 36 H 0.020 0.980 37 H 0.114 0.886 38 H 0.004 0.996 39 H 0.093 0.907 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.154 10.978 -5.150 14.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.142 4.142 3 C 0.118 3.882 4 H -0.004 1.004 5 C -0.584 4.584 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.777 3.223 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.204 1.204 13 N -0.311 5.311 14 C -0.053 4.053 15 C -0.086 4.086 16 H 0.029 0.971 17 C -0.001 4.001 18 O -0.327 6.327 19 C -0.017 4.017 20 C -0.115 4.115 21 N -0.256 5.256 22 C -0.125 4.125 23 H 0.048 0.952 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.152 0.848 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.135 0.865 35 H 0.091 0.909 36 H 0.039 0.961 37 H 0.132 0.868 38 H 0.023 0.977 39 H 0.112 0.888 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.675 10.483 -5.582 14.140 hybrid contribution 1.870 0.194 1.888 2.664 sum -5.805 10.677 -3.694 12.702 Atomic orbital electron populations 1.21627 0.96648 1.00176 1.00133 1.21399 0.94214 0.98697 0.99876 1.18913 0.92663 0.91478 0.85138 1.00440 1.21913 0.93209 1.38027 1.05270 0.92647 1.25654 1.02229 0.94837 0.95543 1.70021 1.36283 1.39070 1.09744 0.85605 0.80877 0.77836 0.77940 1.19153 1.21016 1.20373 1.60948 1.13680 1.30815 1.25662 1.22137 0.94595 0.87383 1.01181 1.22978 0.93041 0.94875 0.97702 0.97138 1.22634 0.97619 0.84239 0.95582 1.87959 1.34354 1.22107 1.88253 1.22887 0.90223 0.91891 0.96675 1.22932 0.99253 0.91949 0.97340 1.62334 1.19999 1.02987 1.40244 1.22453 0.96726 1.01700 0.91585 0.95158 0.92340 0.93426 0.95164 0.92382 0.92963 0.84841 0.92093 0.89491 0.89287 0.90572 0.86461 0.90922 0.96142 0.86826 0.97708 0.88818 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 9.17 71.98 0.66 -4.50 16 2 C -0.10 -5.03 5.45 30.59 0.17 -4.86 16 3 C 0.23 11.33 1.88 44.17 0.08 11.41 16 4 H -0.02 -1.24 7.30 -2.39 -0.02 -1.26 16 5 C -0.55 -29.91 8.60 25.60 0.22 -29.69 16 6 H 0.06 2.99 7.35 -2.91 -0.02 2.97 16 7 C 0.02 0.95 5.29 84.65 0.45 1.39 16 8 N -0.91 -52.72 11.29 21.45 0.24 -52.47 16 9 Si 0.95 44.10 29.54 68.60 2.03 46.13 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 N -0.68 -28.07 6.12 -495.46 -3.03 -31.10 16 14 C 0.08 2.71 4.46 86.30 0.38 3.10 16 15 C 0.02 0.86 2.13 44.93 0.10 0.95 16 16 H 0.01 0.47 7.93 -2.38 -0.02 0.45 16 17 C 0.08 2.40 6.04 72.01 0.43 2.84 16 18 O -0.41 -12.95 10.83 -148.98 -1.61 -14.56 16 19 C 0.06 1.39 7.01 72.01 0.50 1.89 16 20 C 0.01 0.33 5.64 86.31 0.49 0.82 16 21 N -0.53 -15.17 4.80 -896.07 -4.30 -19.46 16 22 C 0.02 0.63 9.01 127.69 1.15 1.78 16 23 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.06 2.18 7.12 -2.39 -0.02 2.16 16 25 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.06 3.20 5.94 -2.38 -0.01 3.18 16 28 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.33 13.60 5.73 -89.69 -0.51 13.08 16 30 H 0.06 2.25 5.04 -2.39 -0.01 2.24 16 31 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.09 2.96 6.58 -2.38 -0.02 2.95 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.11 2.07 8.09 -2.39 -0.02 2.05 16 38 H 0.00 0.14 8.12 -2.39 -0.02 0.12 16 39 H 0.09 1.94 8.04 -2.39 -0.02 1.93 16 40 H 0.07 2.01 6.54 -2.39 -0.02 1.99 16 Total: -1.00 -61.70 305.79 -1.55 -63.25 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.49 Total: 23.09 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 4.64 Total: -14.87 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -7.09 Total: -103.04 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -1.61 Total: -14.56 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -61.70 -1.55 -63.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704195294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.313 kcal (2) G-P(sol) polarization free energy of solvation -61.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds