Wall clock time and date at job start Sun Mar 29 2020 22:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47056 * 2 1 4 4 C 1.53005 * 109.46696 * 240.00391 * 2 1 3 5 5 C 1.50704 * 109.46935 * 174.99992 * 4 2 1 6 6 H 1.07996 * 120.00171 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99746 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99651 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00099 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47148 * 89.99899 * 9 7 5 11 11 H 1.48499 * 109.46963 * 210.00103 * 9 7 5 12 12 H 1.48497 * 109.47221 * 329.99933 * 9 7 5 13 13 N 1.46903 * 109.47429 * 120.00678 * 2 1 3 14 14 C 1.46949 * 111.00283 * 58.79507 * 13 2 1 15 15 C 1.53047 * 109.36563 * 176.81603 * 14 13 2 16 16 N 1.46958 * 109.36628 * 58.40147 * 15 14 13 17 17 C 1.46898 * 111.00054 * 176.81434 * 16 15 14 18 18 C 1.52994 * 109.47086 * 199.50319 * 17 16 15 19 19 O 1.42901 * 109.47040 * 64.65343 * 18 17 16 20 20 C 1.46953 * 110.87768 * 300.67730 * 16 15 14 21 21 C 1.46956 * 110.99258 * 294.99490 * 13 2 1 22 22 H 1.08996 * 109.47433 * 59.99790 * 1 2 3 23 23 H 1.09007 * 109.47310 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.47048 * 299.99473 * 1 2 3 25 25 H 1.09003 * 109.47116 * 294.99354 * 4 2 1 26 26 H 1.08997 * 109.47506 * 54.99744 * 4 2 1 27 27 H 0.96997 * 119.99636 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.48944 * 296.78077 * 14 13 2 29 29 H 1.08998 * 109.49114 * 56.84368 * 14 13 2 30 30 H 1.09006 * 109.48557 * 298.43128 * 15 14 13 31 31 H 1.09008 * 109.50612 * 178.38214 * 15 14 13 32 32 H 1.09000 * 109.47212 * 319.50422 * 17 16 15 33 33 H 1.09007 * 109.47103 * 79.50091 * 17 16 15 34 34 H 1.08998 * 109.47346 * 184.64605 * 18 17 16 35 35 H 1.08991 * 109.47568 * 304.65122 * 18 17 16 36 36 H 0.96699 * 114.00296 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.49292 * 299.35550 * 20 16 15 38 38 H 1.08999 * 109.48760 * 179.28624 * 20 16 15 39 39 H 1.08999 * 109.49754 * 303.15538 * 21 13 2 40 40 H 1.09004 * 109.49006 * 63.20857 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5418 -0.6149 -1.3129 6 1 4.0789 -0.0855 -0.5398 7 6 4.2302 -1.1935 -2.3581 8 7 5.5409 -1.1003 -2.4138 9 14 3.3014 -2.1097 -3.6949 10 1 2.9396 -1.1654 -4.7824 11 1 4.1602 -3.1902 -4.2427 12 1 2.0659 -2.7019 -3.1222 13 7 2.0197 -0.6926 1.1994 14 6 1.5252 -2.0756 1.2477 15 6 2.1202 -2.7849 2.4664 16 7 1.7491 -2.0531 3.6856 17 6 2.2388 -2.7456 4.8849 18 6 1.4556 -2.2637 6.1076 19 8 0.0847 -2.6449 5.9758 20 6 2.2437 -0.6701 3.6372 21 6 1.6486 0.0393 2.4184 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.7516 -1.7715 -1.2057 26 1 1.6052 -0.2617 -2.1370 27 1 6.0252 -1.5070 -3.1492 28 1 0.4379 -2.0705 1.3249 29 1 1.8232 -2.6003 0.3401 30 1 3.2061 -2.8141 2.3759 31 1 1.7324 -3.8023 2.5207 32 1 2.1011 -3.8203 4.7657 33 1 3.2980 -2.5282 5.0230 34 1 1.8732 -2.7150 7.0077 35 1 1.5257 -1.1784 6.1794 36 1 -0.4728 -2.3710 6.7169 37 1 3.3310 -0.6752 3.5601 38 1 1.9456 -0.1454 4.5449 39 1 2.0367 1.0565 2.3644 40 1 0.5627 0.0687 2.5087 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710019710.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:46 Heat of formation + Delta-G solvation = -35.128584 kcal Electronic energy + Delta-G solvation = -18575.923722 eV Core-core repulsion = 15811.867695 eV Total energy + Delta-G solvation = -2764.056026 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.26380 -37.22424 -35.65805 -32.75180 -31.30417 -30.60667 -28.75041 -27.72713 -25.19704 -23.38818 -22.55470 -21.58921 -19.96930 -18.53440 -17.49370 -16.54548 -16.16781 -15.38039 -14.64989 -14.49321 -14.37111 -14.02467 -13.90615 -13.57435 -12.92184 -12.83150 -12.52923 -12.23624 -11.98480 -11.72491 -11.50647 -11.29651 -11.21057 -10.91090 -10.60054 -10.52828 -10.28756 -10.04954 -9.98326 -9.59194 -9.45797 -8.99482 -8.41281 -8.09845 -7.44097 -5.89946 -3.83914 3.36418 3.44336 3.46988 4.02426 4.24057 4.54746 4.55596 5.03531 5.08755 5.26438 5.31710 5.43868 5.47973 5.53500 5.64931 5.71388 5.75347 5.83501 5.83727 5.87438 5.97018 5.98704 6.14069 6.27457 6.38469 6.45242 6.57726 6.63008 6.83518 7.13119 7.23110 7.27827 7.39771 7.61335 7.84609 7.87705 8.00417 8.73743 9.22996 9.73247 11.24138 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.033122 B = 0.005878 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.161846 B = 4762.090937 C = 5005.990401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.096 3.904 3 H 0.075 0.925 4 C -0.009 4.009 5 C -0.490 4.490 6 H 0.078 0.922 7 C 0.061 3.939 8 N -0.909 5.909 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.510 5.510 14 C 0.058 3.942 15 C 0.059 3.941 16 N -0.531 5.531 17 C 0.052 3.948 18 C 0.084 3.916 19 O -0.558 6.558 20 C 0.058 3.942 21 C 0.056 3.944 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.018 0.982 26 H 0.013 0.987 27 H 0.259 0.741 28 H 0.034 0.966 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.370 0.630 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.497 -1.311 15.205 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.012 4.012 3 H 0.093 0.907 4 C -0.046 4.046 5 C -0.528 4.528 6 H 0.096 0.904 7 C -0.138 4.138 8 N -0.549 5.549 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.234 5.234 14 C -0.070 4.070 15 C -0.069 4.069 16 N -0.256 5.256 17 C -0.076 4.076 18 C 0.006 3.994 19 O -0.362 6.362 20 C -0.070 4.070 21 C -0.073 4.073 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.036 0.964 26 H 0.032 0.968 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.215 0.785 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.100 -1.622 14.522 17.214 hybrid contribution -0.501 -0.258 -0.238 0.612 sum -9.602 -1.880 14.284 17.314 Atomic orbital electron populations 1.22547 0.99655 1.01427 1.00920 1.21659 0.89947 0.98474 0.91079 0.90725 1.19725 0.97936 0.95365 0.91606 1.21060 0.89417 1.33752 1.08599 0.90376 1.25013 0.94662 0.96307 0.97813 1.69915 1.06444 1.46251 1.32286 0.86904 0.80206 0.80066 0.82784 1.20573 1.21638 1.19293 1.62239 1.58848 1.01364 1.00969 1.22141 0.96739 0.90388 0.97714 1.22193 0.99093 0.96653 0.88941 1.62133 1.59520 1.02197 1.01716 1.22116 0.95799 0.99513 0.90170 1.22173 0.82644 0.98156 0.96473 1.86626 1.19542 1.81850 1.48206 1.22191 0.97912 0.89125 0.97811 1.22111 0.97925 0.97248 0.90011 0.92655 0.92882 0.93591 0.96407 0.96841 0.93098 0.94823 0.89262 0.93733 0.91031 0.90395 0.93265 0.93891 0.93818 0.78464 0.94007 0.91338 0.90959 0.94670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.16 8.49 37.15 0.32 -2.84 16 2 C 0.10 1.94 2.30 -67.71 -0.16 1.79 16 3 H 0.07 1.55 8.11 -51.93 -0.42 1.13 16 4 C -0.01 -0.21 3.34 -27.88 -0.09 -0.31 16 5 C -0.49 -13.95 9.39 -34.44 -0.32 -14.27 16 6 H 0.08 2.45 7.99 -52.49 -0.42 2.03 16 7 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 8 N -0.91 -28.46 13.96 55.43 0.77 -27.68 16 9 Si 0.87 22.00 27.47 -169.99 -4.67 17.33 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 13 N -0.51 -9.90 4.41 -226.49 -1.00 -10.90 16 14 C 0.06 1.07 4.82 -3.77 -0.02 1.05 16 15 C 0.06 0.97 5.57 -3.77 -0.02 0.95 16 16 N -0.53 -7.90 4.58 -234.46 -1.07 -8.98 16 17 C 0.05 0.64 5.39 -3.83 -0.02 0.62 16 18 C 0.08 0.85 7.23 37.15 0.27 1.12 16 19 O -0.56 -6.35 13.60 -35.23 -0.48 -6.83 16 20 C 0.06 0.85 5.43 -3.76 -0.02 0.83 16 21 C 0.06 0.91 5.25 -3.76 -0.02 0.89 16 22 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.05 0.90 6.46 -51.93 -0.34 0.56 16 24 H 0.05 0.71 6.59 -51.92 -0.34 0.37 16 25 H 0.02 0.43 5.17 -51.93 -0.27 0.16 16 26 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.03 0.60 6.47 -51.93 -0.34 0.27 16 29 H 0.09 1.81 6.07 -51.93 -0.32 1.50 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.07 8.00 -51.92 -0.42 0.65 16 32 H 0.08 0.95 7.85 -51.93 -0.41 0.55 16 33 H 0.05 0.57 8.00 -51.93 -0.42 0.15 16 34 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.04 0.42 6.74 -51.93 -0.35 0.07 16 36 H 0.37 2.41 9.12 45.56 0.42 2.83 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.86 6.72 -51.93 -0.35 0.51 16 39 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 40 H 0.04 0.57 6.60 -51.93 -0.34 0.23 16 LS Contribution 303.89 15.07 4.58 4.58 Total: -1.00 -32.57 303.89 -8.03 -40.60 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.97 Total: 0.35 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -0.19 Total: -8.47 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -1.30 Total: -47.56 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.48 Total: -6.83 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.57 -8.03 -40.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710019710.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.468 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds