Wall clock time and date at job start Sun Mar 29 2020 23:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.50706 * 109.47032 * 120.00448 * 2 1 3 5 5 H 1.08001 * 119.99930 * 119.99860 * 4 2 1 6 6 C 1.37871 * 119.99762 * 299.99926 * 4 2 1 7 7 N 1.31518 * 120.00279 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99682 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47383 * 89.99703 * 8 6 4 10 10 H 1.48500 * 109.46982 * 209.99583 * 8 6 4 11 11 H 1.48499 * 109.47210 * 329.99420 * 8 6 4 12 12 N 1.46506 * 109.46824 * 240.00126 * 2 1 3 13 13 C 1.38548 * 119.99877 * 85.00498 * 12 2 1 14 14 C 1.39571 * 120.48551 * 359.72028 * 13 12 2 15 15 C 1.38278 * 118.43836 * 179.73845 * 14 13 12 16 16 Cl 1.73597 * 120.38131 * 180.24423 * 15 14 13 17 17 N 1.32652 * 119.23941 * 0.53627 * 15 14 13 18 18 C 1.32292 * 120.92270 * 359.72405 * 17 15 14 19 19 O 1.35459 * 119.14581 * 180.02562 * 18 17 15 20 20 N 1.32282 * 121.70859 * 0.02562 * 18 17 15 21 21 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 22 22 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 24 24 H 0.96995 * 120.00082 * 180.02562 * 7 6 4 25 25 H 0.96995 * 120.00050 * 264.72646 * 12 2 1 26 26 H 1.07999 * 120.78371 * 0.02562 * 14 13 12 27 27 H 0.96703 * 113.99435 * 269.97946 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5887 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3224 -1.1199 4.0078 9 1 3.6304 -0.5445 4.4118 10 1 1.3444 -0.9493 5.1122 11 1 2.4878 -2.5657 3.7120 12 7 2.0182 -0.6906 -1.1963 13 6 2.1506 0.0006 -2.3897 14 6 1.8162 1.3536 -2.4651 15 6 1.9700 2.0033 -3.6760 16 17 1.5754 3.6873 -3.8251 17 7 2.4169 1.3237 -4.7239 18 6 2.7205 0.0401 -4.6225 19 8 3.1745 -0.6188 -5.7155 20 7 2.5924 -0.6166 -3.4814 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7095 1.1616 3.4844 25 1 2.2527 -1.6308 -1.1518 26 1 1.4505 1.8818 -1.5970 27 1 2.4766 -1.0237 -6.2486 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858381093.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:40 Heat of formation + Delta-G solvation = 4.568335 kcal Electronic energy + Delta-G solvation = -14995.922500 eV Core-core repulsion = 12201.371831 eV Total energy + Delta-G solvation = -2794.550669 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.73712 -37.60764 -36.79786 -35.88687 -33.54398 -32.17204 -30.19523 -28.62541 -25.49729 -23.86961 -23.26814 -20.81198 -18.83417 -18.23276 -17.02862 -16.21358 -15.48231 -15.14216 -14.94777 -14.30958 -13.99014 -13.53608 -12.79766 -12.58794 -12.05073 -11.87092 -11.35322 -11.24755 -11.15239 -11.00209 -10.74730 -10.48090 -10.39396 -10.29013 -9.31801 -9.29173 -9.00162 -8.69297 -7.56305 -6.33513 -4.42954 1.09398 1.55615 1.79511 3.15145 3.21469 3.23276 3.28956 3.79198 4.04882 4.22222 4.97255 5.01303 5.10728 5.61317 5.68520 6.15061 6.44465 6.66888 6.75214 6.90397 7.10188 7.46490 7.52477 7.56087 7.77966 7.90375 8.25142 8.41946 8.66174 9.25247 10.72744 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.030167 B = 0.006246 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.944577 B = 4481.905208 C = 5154.580116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.537 4.537 5 H 0.065 0.935 6 C 0.070 3.930 7 N -0.883 5.883 8 Si 0.906 3.094 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.669 5.669 13 C 0.472 3.528 14 C -0.280 4.280 15 C 0.263 3.737 16 Cl -0.025 7.025 17 N -0.584 5.584 18 C 0.548 3.452 19 O -0.459 6.459 20 N -0.596 5.596 21 H 0.015 0.985 22 H 0.034 0.966 23 H 0.097 0.903 24 H 0.268 0.732 25 H 0.404 0.596 26 H 0.161 0.839 27 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.853 0.819 -9.150 9.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.575 4.575 5 H 0.083 0.917 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.733 3.267 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.294 5.294 13 C 0.223 3.777 14 C -0.310 4.310 15 C 0.096 3.904 16 Cl 0.003 6.997 17 N -0.320 5.320 18 C 0.240 3.760 19 O -0.261 6.261 20 N -0.334 5.334 21 H 0.034 0.966 22 H 0.053 0.947 23 H 0.115 0.885 24 H 0.077 0.923 25 H 0.239 0.761 26 H 0.178 0.822 27 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -0.173 0.845 -9.425 9.464 hybrid contribution -0.318 -0.377 1.243 1.338 sum -0.491 0.468 -8.182 8.210 Atomic orbital electron populations 1.22219 0.97758 1.00195 1.01181 1.19078 0.91389 0.93739 0.79633 0.93364 1.21109 1.32955 1.13713 0.89742 0.91655 1.24853 0.94503 0.94916 0.99139 1.69851 1.35503 1.22303 1.24386 0.86363 0.78675 0.79927 0.81725 1.20391 1.20921 1.19716 1.45713 1.64287 1.13310 1.06044 1.18305 0.85475 0.87692 0.86178 1.21957 1.14147 0.95311 0.99609 1.21129 0.92791 0.87498 0.89000 1.98400 1.91376 1.11760 1.98169 1.67111 1.22000 1.09441 1.33403 1.19425 0.87495 0.83569 0.85466 1.84693 1.35391 1.70640 1.35408 1.67455 1.25393 1.40833 0.99714 0.96553 0.94666 0.88453 0.92252 0.76064 0.82187 0.73329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.22 37.16 0.34 -2.99 15 2 C 0.26 5.86 2.26 -69.08 -0.16 5.71 15 3 H 0.05 1.16 6.52 -51.93 -0.34 0.82 15 4 C -0.54 -13.16 8.73 -34.44 -0.30 -13.46 15 5 H 0.07 1.58 7.74 -52.49 -0.41 1.17 15 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 15 7 N -0.88 -22.67 11.32 55.43 0.63 -22.04 15 8 Si 0.91 19.58 29.54 -169.99 -5.02 14.56 15 9 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 11 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 12 N -0.67 -13.21 5.22 -54.92 -0.29 -13.50 15 13 C 0.47 9.01 7.68 -154.81 -1.19 7.82 15 14 C -0.28 -5.09 8.71 -39.07 -0.34 -5.43 15 15 C 0.26 4.53 7.32 -17.18 -0.13 4.41 15 16 Cl -0.03 -0.38 29.15 -51.86 -1.51 -1.89 15 17 N -0.58 -10.32 10.46 -11.91 -0.12 -10.45 15 18 C 0.55 9.45 8.71 -91.31 -0.80 8.66 15 19 O -0.46 -6.45 13.64 -18.07 -0.25 -6.70 15 20 N -0.60 -11.03 10.50 -13.98 -0.15 -11.18 15 21 H 0.02 0.31 7.71 -51.93 -0.40 -0.09 15 22 H 0.03 0.74 8.14 -51.93 -0.42 0.31 15 23 H 0.10 2.30 6.07 -51.93 -0.32 1.99 15 24 H 0.27 6.57 8.31 -40.82 -0.34 6.23 15 25 H 0.40 7.63 8.66 -40.82 -0.35 7.27 15 26 H 0.16 2.92 6.26 -52.49 -0.33 2.59 15 27 H 0.41 3.38 9.06 45.56 0.41 3.79 15 LS Contribution 257.54 15.07 3.88 3.88 Total: -1.00 -26.88 257.54 -6.77 -33.65 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -1.29 Total: 7.30 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -2.66 Total: 6.36 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.07 Total: -57.16 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.25 Total: -6.70 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.51 Total: -1.89 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -26.88 -6.77 -33.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858381093.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.218 kcal (2) G-P(sol) polarization free energy of solvation -26.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds