Wall clock time and date at job start Sun Mar 29 2020 23:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.50706 * 109.47032 * 120.00448 * 2 1 3 5 5 H 1.08001 * 119.99930 * 119.99860 * 4 2 1 6 6 C 1.37871 * 119.99762 * 299.99926 * 4 2 1 7 7 N 1.31518 * 120.00279 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99682 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47383 * 89.99703 * 8 6 4 10 10 H 1.48500 * 109.46982 * 209.99583 * 8 6 4 11 11 H 1.48499 * 109.47210 * 329.99420 * 8 6 4 12 12 N 1.46506 * 109.46824 * 240.00126 * 2 1 3 13 13 C 1.38548 * 119.99877 * 85.00498 * 12 2 1 14 14 C 1.39571 * 120.48551 * 359.72028 * 13 12 2 15 15 C 1.38278 * 118.43836 * 179.73845 * 14 13 12 16 16 Cl 1.73597 * 120.38131 * 180.24423 * 15 14 13 17 17 N 1.32652 * 119.23941 * 0.53627 * 15 14 13 18 18 C 1.32292 * 120.92270 * 359.72405 * 17 15 14 19 19 O 1.35459 * 119.14581 * 180.02562 * 18 17 15 20 20 N 1.32282 * 121.70859 * 0.02562 * 18 17 15 21 21 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 22 22 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 24 24 H 0.96995 * 120.00082 * 180.02562 * 7 6 4 25 25 H 0.96995 * 120.00050 * 264.72646 * 12 2 1 26 26 H 1.07999 * 120.78371 * 0.02562 * 14 13 12 27 27 H 0.96703 * 113.99435 * 269.97946 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5887 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3224 -1.1199 4.0078 9 1 3.6304 -0.5445 4.4118 10 1 1.3444 -0.9493 5.1122 11 1 2.4878 -2.5657 3.7120 12 7 2.0182 -0.6906 -1.1963 13 6 2.1506 0.0006 -2.3897 14 6 1.8162 1.3536 -2.4651 15 6 1.9700 2.0033 -3.6760 16 17 1.5754 3.6873 -3.8251 17 7 2.4169 1.3237 -4.7239 18 6 2.7205 0.0401 -4.6225 19 8 3.1745 -0.6188 -5.7155 20 7 2.5924 -0.6166 -3.4814 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7095 1.1616 3.4844 25 1 2.2527 -1.6308 -1.1518 26 1 1.4505 1.8818 -1.5970 27 1 2.4766 -1.0237 -6.2486 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858381093.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:40 Heat of formation + Delta-G solvation = -16.636495 kcal Electronic energy + Delta-G solvation = -14996.842010 eV Core-core repulsion = 12201.371831 eV Total energy + Delta-G solvation = -2795.470179 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.12573 -38.92947 -38.14744 -37.31003 -35.18236 -33.76738 -31.68447 -30.25507 -27.34861 -25.25209 -24.76532 -22.45841 -20.19132 -19.70558 -18.50712 -17.81585 -16.91666 -16.87718 -16.36899 -15.79731 -15.45523 -14.99266 -14.46090 -14.20083 -13.48564 -13.20421 -12.98041 -12.92124 -12.76947 -12.48118 -12.30323 -12.16656 -11.95734 -11.83934 -11.12399 -10.71466 -10.53904 -10.39969 -9.09700 -8.21559 -6.36377 -0.26807 0.13480 0.47554 1.44745 1.47270 1.55607 1.89486 2.34255 2.48498 2.65009 3.10543 3.54501 3.73125 4.19226 4.35006 4.65270 4.81931 4.94429 5.02603 5.34728 5.51191 5.60470 5.79054 6.01925 6.23907 6.52737 6.62277 6.77356 7.05326 7.35244 8.83934 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.030167 B = 0.006246 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.944577 B = 4481.905208 C = 5154.580116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.272 3.728 3 H 0.030 0.970 4 C -0.552 4.552 5 H 0.064 0.936 6 C 0.028 3.972 7 N -0.907 5.907 8 Si 0.963 3.037 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.268 1.268 12 N -0.672 5.672 13 C 0.465 3.535 14 C -0.290 4.290 15 C 0.265 3.735 16 Cl -0.002 7.002 17 N -0.588 5.588 18 C 0.550 3.450 19 O -0.457 6.457 20 N -0.604 5.604 21 H 0.030 0.970 22 H 0.034 0.966 23 H 0.076 0.924 24 H 0.268 0.732 25 H 0.407 0.593 26 H 0.156 0.844 27 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.632 0.561 -9.867 9.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.169 3.831 3 H 0.047 0.953 4 C -0.590 4.590 5 H 0.083 0.917 6 C -0.174 4.174 7 N -0.544 5.544 8 Si 0.789 3.211 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.193 1.193 12 N -0.298 5.298 13 C 0.218 3.782 14 C -0.320 4.320 15 C 0.097 3.903 16 Cl 0.027 6.973 17 N -0.323 5.323 18 C 0.244 3.756 19 O -0.263 6.263 20 N -0.343 5.343 21 H 0.049 0.951 22 H 0.053 0.947 23 H 0.094 0.906 24 H 0.077 0.923 25 H 0.243 0.757 26 H 0.174 0.826 27 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 0.043 0.571 -10.197 10.213 hybrid contribution -0.370 -0.253 1.323 1.396 sum -0.328 0.319 -8.874 8.886 Atomic orbital electron populations 1.22038 0.97312 0.99983 1.00797 1.18769 0.91606 0.92669 0.80016 0.95273 1.21419 1.32924 1.13813 0.90825 0.91737 1.25543 0.94730 0.95542 1.01567 1.69952 1.36320 1.23294 1.24867 0.85474 0.77947 0.79025 0.78700 1.20437 1.20747 1.19289 1.45405 1.65225 1.13336 1.05816 1.18369 0.85716 0.88008 0.86126 1.21930 1.14920 0.95161 0.99974 1.21300 0.91871 0.88507 0.88605 1.98408 1.91060 1.09739 1.98088 1.67265 1.22116 1.09648 1.33309 1.19628 0.86426 0.83677 0.85903 1.84660 1.36572 1.70475 1.34619 1.67478 1.25765 1.41124 0.99918 0.95078 0.94679 0.90569 0.92250 0.75714 0.82621 0.70332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.12 9.22 71.98 0.66 -5.46 15 2 C 0.27 12.15 2.26 44.24 0.10 12.25 15 3 H 0.03 1.42 6.52 -2.39 -0.02 1.41 15 4 C -0.55 -26.99 8.73 25.60 0.22 -26.77 15 5 H 0.06 3.09 7.74 -2.91 -0.02 3.07 15 6 C 0.03 1.37 5.30 84.65 0.45 1.82 15 7 N -0.91 -46.70 11.32 21.45 0.24 -46.46 15 8 Si 0.96 39.83 29.54 68.60 2.03 41.86 15 9 H -0.28 -11.47 7.11 99.48 0.71 -10.77 15 10 H -0.28 -11.50 7.11 99.48 0.71 -10.79 15 11 H -0.27 -10.83 7.11 99.48 0.71 -10.12 15 12 N -0.67 -26.33 5.22 -327.68 -1.71 -28.04 15 13 C 0.47 17.43 7.68 133.16 1.02 18.45 15 14 C -0.29 -10.33 8.71 22.60 0.20 -10.13 15 15 C 0.26 8.77 7.32 84.58 0.62 9.39 15 16 Cl 0.00 -0.04 29.15 -2.72 -0.08 -0.12 15 17 N -0.59 -19.68 10.46 -304.56 -3.18 -22.87 15 18 C 0.55 17.96 8.71 180.59 1.57 19.53 15 19 O -0.46 -11.70 13.64 -87.57 -1.19 -12.90 15 20 N -0.60 -21.57 10.50 -311.10 -3.27 -24.84 15 21 H 0.03 1.20 7.71 -2.39 -0.02 1.18 15 22 H 0.03 1.46 8.14 -2.39 -0.02 1.44 15 23 H 0.08 3.63 6.07 -2.39 -0.01 3.61 15 24 H 0.27 13.19 8.31 -92.71 -0.77 12.42 15 25 H 0.41 15.22 8.66 -92.71 -0.80 14.42 15 26 H 0.16 5.67 6.26 -2.91 -0.02 5.65 15 27 H 0.43 5.94 9.06 -74.06 -0.67 5.27 15 Total: -1.00 -54.96 257.54 -2.55 -57.51 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -0.23 Total: 16.78 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 4.85 Total: 19.08 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -7.92 Total: -122.21 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -1.19 Total: -12.90 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -0.08 Total: -0.12 kcal Total: -54.96 -2.55 -57.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858381093.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.874 kcal (2) G-P(sol) polarization free energy of solvation -54.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds