Wall clock time and date at job start Sun Mar 29 2020 22:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46897 * 109.47034 * 2 1 4 4 C 1.48112 * 110.99729 * 66.04959 * 3 2 1 5 5 C 1.46134 * 112.18949 * 156.48971 * 4 3 2 6 6 C 1.54249 * 111.90826 * 60.85903 * 5 4 3 7 7 N 1.44257 * 108.64633 * 281.38425 * 6 5 4 8 8 C 1.46898 * 111.00007 * 219.85077 * 7 6 5 9 9 C 1.52998 * 109.46906 * 164.19469 * 8 7 6 10 10 H 1.08998 * 109.48001 * 57.99021 * 9 8 7 11 11 O 1.42904 * 109.47164 * 297.98850 * 9 8 7 12 12 C 1.50707 * 109.47409 * 177.99347 * 9 8 7 13 13 H 1.08003 * 119.99391 * 359.97438 * 12 9 8 14 14 C 1.37867 * 120.00455 * 179.97438 * 12 9 8 15 15 N 1.31507 * 120.00288 * 179.97438 * 14 12 9 16 16 Si 1.86803 * 119.99906 * 359.97438 * 14 12 9 17 17 H 1.48502 * 109.46959 * 90.00259 * 16 14 12 18 18 H 1.48499 * 109.47239 * 210.00174 * 16 14 12 19 19 H 1.48497 * 109.47434 * 330.00729 * 16 14 12 20 20 C 1.48201 * 114.26964 * 93.39039 * 7 6 5 21 21 C 1.44253 * 111.00309 * 303.40545 * 3 2 1 22 22 H 1.08999 * 109.47000 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46704 * 299.99897 * 1 2 3 24 24 H 1.09002 * 109.46843 * 59.99402 * 1 2 3 25 25 H 1.08998 * 109.47061 * 240.00476 * 2 1 3 26 26 H 1.09001 * 109.47168 * 120.00166 * 2 1 3 27 27 H 1.08997 * 108.94220 * 35.79049 * 4 3 2 28 28 H 1.09005 * 108.93251 * 277.18134 * 4 3 2 29 29 H 1.08998 * 109.00001 * 181.48398 * 5 4 3 30 30 H 1.09001 * 108.99525 * 300.31590 * 5 4 3 31 31 H 1.09003 * 109.61219 * 41.12757 * 6 5 4 32 32 H 1.09003 * 109.61043 * 161.46572 * 6 5 4 33 33 H 1.09002 * 109.46916 * 284.18453 * 8 7 6 34 34 H 1.08993 * 109.47362 * 44.18935 * 8 7 6 35 35 H 0.96699 * 113.99652 * 304.97398 * 11 9 8 36 36 H 0.97004 * 120.00737 * 180.02562 * 15 14 12 37 37 H 1.08996 * 108.81896 * 78.99242 * 20 7 6 38 38 H 1.08994 * 108.81821 * 197.40177 * 20 7 6 39 39 H 1.08997 * 108.87306 * 96.33954 * 21 3 2 40 40 H 1.08997 * 108.78623 * 337.86481 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6674 2.0724 1.2637 5 6 2.5575 3.1962 1.5474 6 6 2.4961 4.2719 0.4436 7 7 3.2866 3.8272 -0.6782 8 6 4.0438 4.9417 -1.2634 9 6 5.1467 4.3893 -2.1686 10 1 4.7019 3.7667 -2.9448 11 8 6.0534 3.6054 -1.3905 12 6 5.8920 5.5328 -2.8075 13 1 5.6071 6.5516 -2.5900 14 6 6.9374 5.2783 -3.6696 15 7 7.5874 6.2761 -4.2275 16 14 7.4304 3.5161 -4.0452 17 1 6.6675 3.0289 -5.2224 18 1 8.8847 3.4613 -4.3406 19 1 7.1310 2.6573 -2.8714 20 6 2.5165 3.1044 -1.7178 21 6 1.4930 2.1196 -1.1242 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.7278 1.3575 2.0842 28 1 0.6440 2.4410 1.1924 29 1 2.2693 3.6461 2.4975 30 1 3.5803 2.8277 1.6255 31 1 1.4623 4.4145 0.1288 32 1 2.8951 5.2115 0.8259 33 1 3.3723 5.5686 -1.8502 34 1 4.4912 5.5353 -0.4662 35 1 6.4295 4.0750 -0.6334 36 1 8.3227 6.0972 -4.8344 37 1 1.9880 3.8321 -2.3335 38 1 3.2114 2.5497 -2.3481 39 1 0.6141 2.6771 -0.8006 40 1 1.1956 1.4117 -1.8978 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929481059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:56 Heat of formation + Delta-G solvation = -30.276314 kcal Electronic energy + Delta-G solvation = -18749.657226 eV Core-core repulsion = 15985.811610 eV Total energy + Delta-G solvation = -2763.845616 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.44993 -36.91196 -35.03299 -32.79711 -32.13557 -30.75788 -28.81654 -26.91597 -25.62929 -23.94992 -22.99084 -20.58449 -20.14395 -19.24510 -17.24643 -16.06123 -16.00108 -15.10012 -14.73214 -14.60802 -14.19040 -13.96877 -13.87699 -13.52719 -13.03803 -12.85980 -12.60065 -12.43267 -12.06739 -11.75847 -11.51015 -11.23701 -11.08275 -10.83434 -10.76444 -10.67773 -10.55473 -10.38159 -10.18871 -9.74043 -8.92600 -8.52332 -8.16485 -8.08842 -7.44428 -6.04717 -4.15080 3.46668 3.55817 3.86526 3.90945 4.42879 4.63636 4.89843 4.93771 5.03244 5.13589 5.25973 5.30544 5.31683 5.40847 5.51600 5.58881 5.62407 5.73893 5.78723 5.84427 5.96632 5.99683 6.02312 6.05287 6.15199 6.25675 6.40238 6.48016 6.61193 6.69725 7.19962 7.23891 7.44828 7.55572 7.84816 7.91946 8.39148 8.92089 9.24434 9.62053 11.06116 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.034575 B = 0.006262 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.650755 B = 4470.634122 C = 4846.358121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.051 3.949 3 N -0.515 5.515 4 C 0.066 3.934 5 C -0.116 4.116 6 C 0.069 3.931 7 N -0.533 5.533 8 C 0.045 3.955 9 C 0.203 3.797 10 H 0.050 0.950 11 O -0.567 6.567 12 C -0.564 4.564 13 H 0.069 0.931 14 C 0.084 3.916 15 N -0.897 5.897 16 Si 0.871 3.129 17 H -0.290 1.290 18 H -0.297 1.297 19 H -0.213 1.213 20 C 0.073 3.927 21 C 0.060 3.940 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.026 0.974 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.025 0.975 32 H 0.063 0.937 33 H 0.028 0.972 34 H 0.067 0.933 35 H 0.350 0.650 36 H 0.263 0.737 37 H 0.029 0.971 38 H 0.077 0.923 39 H 0.031 0.969 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.152 -9.711 10.225 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.077 4.077 3 N -0.238 5.238 4 C -0.061 4.061 5 C -0.154 4.154 6 C -0.060 4.060 7 N -0.257 5.257 8 C -0.082 4.082 9 C 0.145 3.855 10 H 0.068 0.932 11 O -0.371 6.371 12 C -0.602 4.602 13 H 0.087 0.913 14 C -0.120 4.120 15 N -0.535 5.535 16 Si 0.698 3.302 17 H -0.217 1.217 18 H -0.224 1.224 19 H -0.136 1.136 20 C -0.055 4.055 21 C -0.069 4.069 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.196 0.804 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.354 -10.448 9.811 19.590 hybrid contribution -1.106 0.432 -0.326 1.231 sum -14.460 -10.016 9.484 19.984 Atomic orbital electron populations 1.22513 0.98646 1.02031 1.01869 1.22294 0.92282 0.90336 1.02807 1.61607 1.59059 1.01142 1.02009 1.21036 0.96739 0.96520 0.91821 1.20633 1.02083 0.95608 0.97116 1.21721 0.95295 0.96729 0.92281 1.60339 1.28422 1.27936 1.09003 1.22908 0.96300 0.90816 0.98188 1.19674 0.86347 0.90717 0.88748 0.93209 1.86701 1.63106 1.43954 1.43378 1.21569 1.16974 0.93787 1.27856 0.91298 1.24966 0.95135 0.97826 0.94086 1.69965 1.21713 1.31867 1.29949 0.87023 0.76680 0.86632 0.79914 1.21665 1.22407 1.13554 1.22416 0.94926 0.95119 0.93059 1.21921 0.95249 0.96027 0.93722 0.92367 0.92812 0.92602 0.90658 0.90844 0.91894 0.95600 0.92274 0.89905 0.95689 0.91820 0.95421 0.91471 0.80423 0.92724 0.95329 0.90416 0.95118 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.71 9.37 37.16 0.35 -1.37 16 2 C 0.05 0.54 5.80 -3.82 -0.02 0.52 16 3 N -0.52 -6.82 4.62 -239.23 -1.11 -7.92 16 4 C 0.07 0.78 4.12 -6.41 -0.03 0.75 16 5 C -0.12 -1.48 5.66 -29.34 -0.17 -1.65 16 6 C 0.07 1.01 5.40 -4.58 -0.02 0.98 16 7 N -0.53 -9.32 4.03 -234.26 -0.94 -10.27 16 8 C 0.05 0.91 4.44 -3.83 -0.02 0.89 16 9 C 0.20 4.86 2.26 -27.88 -0.06 4.80 16 10 H 0.05 1.25 6.18 -51.93 -0.32 0.93 16 11 O -0.57 -13.48 10.05 -35.23 -0.35 -13.83 16 12 C -0.56 -15.98 9.37 -34.44 -0.32 -16.30 16 13 H 0.07 2.09 7.99 -52.48 -0.42 1.68 16 14 C 0.08 2.47 5.47 -17.83 -0.10 2.37 16 15 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 16 Si 0.87 22.52 26.99 -169.99 -4.59 17.93 16 17 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 18 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 19 H -0.21 -5.45 5.30 56.52 0.30 -5.16 16 20 C 0.07 1.20 5.27 -2.62 -0.01 1.19 16 21 C 0.06 0.80 3.91 -4.75 -0.02 0.78 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.48 7.11 -51.93 -0.37 0.11 16 24 H 0.05 0.52 6.74 -51.93 -0.35 0.17 16 25 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 26 H 0.07 0.73 7.91 -51.93 -0.41 0.32 16 27 H 0.06 0.67 7.71 -51.93 -0.40 0.27 16 28 H 0.03 0.29 6.92 -51.93 -0.36 -0.07 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16 31 H 0.02 0.35 6.96 -51.93 -0.36 -0.01 16 32 H 0.06 0.91 7.31 -51.93 -0.38 0.53 16 33 H 0.03 0.57 7.95 -51.93 -0.41 0.15 16 34 H 0.07 1.33 7.60 -51.93 -0.39 0.93 16 35 H 0.35 7.47 9.02 45.56 0.41 7.88 16 36 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 37 H 0.03 0.47 7.90 -51.93 -0.41 0.05 16 38 H 0.08 1.44 7.00 -51.93 -0.36 1.08 16 39 H 0.03 0.39 6.55 -51.93 -0.34 0.05 16 40 H 0.07 0.82 6.94 -51.93 -0.36 0.46 16 LS Contribution 298.86 15.07 4.50 4.50 Total: -1.00 -31.64 298.86 -8.30 -39.94 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.17 Total: 3.83 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -0.42 Total: -7.03 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -1.28 Total: -45.35 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.35 Total: -13.83 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.59 Total: 17.93 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.64 -8.30 -39.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929481059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.666 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds