Wall clock time and date at job start Sun Mar 29 2020 22:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46897 * 109.47034 * 2 1 4 4 C 1.48112 * 110.99729 * 66.04959 * 3 2 1 5 5 C 1.46134 * 112.18949 * 156.48971 * 4 3 2 6 6 C 1.54249 * 111.90826 * 60.85903 * 5 4 3 7 7 N 1.44257 * 108.64633 * 281.38425 * 6 5 4 8 8 C 1.46898 * 111.00007 * 219.85077 * 7 6 5 9 9 C 1.52998 * 109.46906 * 164.19469 * 8 7 6 10 10 H 1.08998 * 109.48001 * 57.99021 * 9 8 7 11 11 O 1.42904 * 109.47164 * 297.98850 * 9 8 7 12 12 C 1.50707 * 109.47409 * 177.99347 * 9 8 7 13 13 H 1.08003 * 119.99391 * 359.97438 * 12 9 8 14 14 C 1.37867 * 120.00455 * 179.97438 * 12 9 8 15 15 N 1.31507 * 120.00288 * 179.97438 * 14 12 9 16 16 Si 1.86803 * 119.99906 * 359.97438 * 14 12 9 17 17 H 1.48502 * 109.46959 * 90.00259 * 16 14 12 18 18 H 1.48499 * 109.47239 * 210.00174 * 16 14 12 19 19 H 1.48497 * 109.47434 * 330.00729 * 16 14 12 20 20 C 1.48201 * 114.26964 * 93.39039 * 7 6 5 21 21 C 1.44253 * 111.00309 * 303.40545 * 3 2 1 22 22 H 1.08999 * 109.47000 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46704 * 299.99897 * 1 2 3 24 24 H 1.09002 * 109.46843 * 59.99402 * 1 2 3 25 25 H 1.08998 * 109.47061 * 240.00476 * 2 1 3 26 26 H 1.09001 * 109.47168 * 120.00166 * 2 1 3 27 27 H 1.08997 * 108.94220 * 35.79049 * 4 3 2 28 28 H 1.09005 * 108.93251 * 277.18134 * 4 3 2 29 29 H 1.08998 * 109.00001 * 181.48398 * 5 4 3 30 30 H 1.09001 * 108.99525 * 300.31590 * 5 4 3 31 31 H 1.09003 * 109.61219 * 41.12757 * 6 5 4 32 32 H 1.09003 * 109.61043 * 161.46572 * 6 5 4 33 33 H 1.09002 * 109.46916 * 284.18453 * 8 7 6 34 34 H 1.08993 * 109.47362 * 44.18935 * 8 7 6 35 35 H 0.96699 * 113.99652 * 304.97398 * 11 9 8 36 36 H 0.97004 * 120.00737 * 180.02562 * 15 14 12 37 37 H 1.08996 * 108.81896 * 78.99242 * 20 7 6 38 38 H 1.08994 * 108.81821 * 197.40177 * 20 7 6 39 39 H 1.08997 * 108.87306 * 96.33954 * 21 3 2 40 40 H 1.08997 * 108.78623 * 337.86481 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6674 2.0724 1.2637 5 6 2.5575 3.1962 1.5474 6 6 2.4961 4.2719 0.4436 7 7 3.2866 3.8272 -0.6782 8 6 4.0438 4.9417 -1.2634 9 6 5.1467 4.3893 -2.1686 10 1 4.7019 3.7667 -2.9448 11 8 6.0534 3.6054 -1.3905 12 6 5.8920 5.5328 -2.8075 13 1 5.6071 6.5516 -2.5900 14 6 6.9374 5.2783 -3.6696 15 7 7.5874 6.2761 -4.2275 16 14 7.4304 3.5161 -4.0452 17 1 6.6675 3.0289 -5.2224 18 1 8.8847 3.4613 -4.3406 19 1 7.1310 2.6573 -2.8714 20 6 2.5165 3.1044 -1.7178 21 6 1.4930 2.1196 -1.1242 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.7278 1.3575 2.0842 28 1 0.6440 2.4410 1.1924 29 1 2.2693 3.6461 2.4975 30 1 3.5803 2.8277 1.6255 31 1 1.4623 4.4145 0.1288 32 1 2.8951 5.2115 0.8259 33 1 3.3723 5.5686 -1.8502 34 1 4.4912 5.5353 -0.4662 35 1 6.4295 4.0750 -0.6334 36 1 8.3227 6.0972 -4.8344 37 1 1.9880 3.8321 -2.3335 38 1 3.2114 2.5497 -2.3481 39 1 0.6141 2.6771 -0.8006 40 1 1.1956 1.4117 -1.8978 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929481059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:56 Heat of formation + Delta-G solvation = -55.399428 kcal Electronic energy + Delta-G solvation = -18750.746646 eV Core-core repulsion = 15985.811610 eV Total energy + Delta-G solvation = -2764.935036 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.54697 -38.44268 -36.56872 -34.38577 -33.89688 -31.81862 -30.44972 -28.26216 -26.92682 -25.48773 -23.99779 -22.32445 -21.22927 -20.44758 -19.32305 -17.24810 -17.14077 -16.74323 -16.36377 -16.13545 -15.56471 -15.51227 -14.98282 -14.81654 -14.68284 -14.12198 -13.86247 -13.50704 -13.44463 -13.12457 -12.86113 -12.77978 -12.56920 -12.46485 -12.22341 -11.80956 -11.78627 -11.63711 -11.47198 -11.39354 -10.99937 -10.77661 -10.05477 -9.11208 -8.82900 -8.33987 -6.47646 1.39828 1.45079 1.78263 2.46643 2.90791 3.05180 3.17247 3.96973 4.01316 4.10987 4.12679 4.18545 4.23315 4.38028 4.40217 4.52121 4.55491 4.57798 4.65793 4.71973 4.80114 4.85520 4.96481 4.99498 5.06091 5.10259 5.11953 5.23300 5.32683 5.51492 5.54436 5.55389 6.10574 6.20430 6.30408 6.40341 6.59831 6.65573 7.26270 7.43897 8.80406 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.034575 B = 0.006262 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.650755 B = 4470.634122 C = 4846.358121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.051 3.949 3 N -0.540 5.540 4 C 0.066 3.934 5 C -0.108 4.108 6 C 0.066 3.934 7 N -0.538 5.538 8 C 0.059 3.941 9 C 0.213 3.787 10 H 0.042 0.958 11 O -0.571 6.571 12 C -0.566 4.566 13 H 0.036 0.964 14 C 0.030 3.970 15 N -0.941 5.941 16 Si 0.938 3.062 17 H -0.287 1.287 18 H -0.296 1.296 19 H -0.207 1.207 20 C 0.069 3.931 21 C 0.070 3.930 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.037 0.963 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.064 0.936 33 H 0.019 0.981 34 H 0.069 0.931 35 H 0.362 0.638 36 H 0.266 0.734 37 H 0.027 0.973 38 H 0.052 0.948 39 H 0.041 0.959 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.586 -11.561 11.605 22.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.076 4.076 3 N -0.264 5.264 4 C -0.061 4.061 5 C -0.146 4.146 6 C -0.063 4.063 7 N -0.263 5.263 8 C -0.069 4.069 9 C 0.154 3.846 10 H 0.060 0.940 11 O -0.377 6.377 12 C -0.604 4.604 13 H 0.054 0.946 14 C -0.169 4.169 15 N -0.581 5.581 16 Si 0.762 3.238 17 H -0.213 1.213 18 H -0.223 1.223 19 H -0.129 1.129 20 C -0.059 4.059 21 C -0.059 4.059 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.037 0.963 34 H 0.087 0.913 35 H 0.209 0.791 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.807 -12.306 11.216 22.282 hybrid contribution -0.672 1.065 -0.713 1.447 sum -15.480 -11.241 10.502 21.824 Atomic orbital electron populations 1.22421 0.97144 1.02902 1.01762 1.22305 0.93494 0.88855 1.02962 1.61538 1.60100 1.02342 1.02373 1.21054 0.96881 0.96459 0.91724 1.20590 1.01133 0.95453 0.97471 1.21838 0.95217 0.97593 0.91611 1.60301 1.29596 1.26735 1.09644 1.22576 0.95472 0.91399 0.97483 1.19435 0.86885 0.88974 0.89290 0.94026 1.86631 1.63266 1.43893 1.43862 1.21911 1.16991 0.93803 1.27676 0.94608 1.25798 0.95364 1.01582 0.94144 1.70080 1.22766 1.33981 1.31274 0.85993 0.76139 0.81871 0.79771 1.21321 1.22304 1.12937 1.22462 0.94984 0.95492 0.92946 1.21769 0.94165 0.95662 0.94310 0.91056 0.92530 0.93005 0.91164 0.90123 0.90370 0.94530 0.89683 0.92135 0.94785 0.91720 0.96304 0.91274 0.79093 0.92501 0.95524 0.92960 0.94114 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.72 9.37 71.98 0.67 -2.05 16 2 C 0.05 0.96 5.80 86.31 0.50 1.46 16 3 N -0.54 -12.99 4.62 -910.78 -4.21 -17.19 16 4 C 0.07 1.35 4.12 83.96 0.35 1.69 16 5 C -0.11 -2.47 5.66 28.91 0.16 -2.31 16 6 C 0.07 1.79 5.40 87.22 0.47 2.26 16 7 N -0.54 -18.26 4.03 -895.08 -3.61 -21.87 16 8 C 0.06 2.35 4.44 86.30 0.38 2.73 16 9 C 0.21 10.15 2.26 29.85 0.07 10.22 16 10 H 0.04 2.08 6.18 -2.39 -0.01 2.07 16 11 O -0.57 -26.52 10.05 -148.98 -1.50 -28.02 16 12 C -0.57 -32.61 9.37 25.60 0.24 -32.37 16 13 H 0.04 2.25 7.99 -2.91 -0.02 2.22 16 14 C 0.03 1.81 5.47 84.65 0.46 2.28 16 15 N -0.94 -59.69 13.96 21.44 0.30 -59.39 16 16 Si 0.94 46.95 26.99 68.60 1.85 48.80 16 17 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 18 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 19 H -0.21 -10.10 5.30 99.48 0.53 -9.57 16 20 C 0.07 2.22 5.27 86.37 0.46 2.68 16 21 C 0.07 1.74 3.91 87.11 0.34 2.08 16 22 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.06 0.82 7.11 -2.39 -0.02 0.80 16 24 H 0.05 0.81 6.74 -2.39 -0.02 0.80 16 25 H 0.07 1.37 8.11 -2.39 -0.02 1.35 16 26 H 0.08 1.38 7.91 -2.39 -0.02 1.36 16 27 H 0.08 1.38 7.71 -2.39 -0.02 1.36 16 28 H 0.04 0.69 6.92 -2.38 -0.02 0.67 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.68 8.12 -2.39 -0.02 1.66 16 31 H 0.03 0.87 6.96 -2.39 -0.02 0.86 16 32 H 0.06 1.74 7.31 -2.39 -0.02 1.72 16 33 H 0.02 0.78 7.95 -2.39 -0.02 0.76 16 34 H 0.07 2.71 7.60 -2.39 -0.02 2.69 16 35 H 0.36 15.04 9.02 -74.06 -0.67 14.38 16 36 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 37 H 0.03 0.85 7.90 -2.39 -0.02 0.83 16 38 H 0.05 1.92 7.00 -2.39 -0.02 1.91 16 39 H 0.04 0.93 6.55 -2.39 -0.02 0.91 16 40 H 0.08 1.75 6.94 -2.39 -0.02 1.73 16 Total: -1.00 -67.53 298.86 -2.89 -70.43 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.16 Total: 18.57 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 4.11 Total: -11.33 kcal Atomic # 7 Polarization: -90.93 SS G_CDS: -7.52 Total: -98.45 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -1.50 Total: -28.02 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.85 Total: 48.80 kcal Total: -67.53 -2.89 -70.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929481059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.027 kcal (2) G-P(sol) polarization free energy of solvation -67.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds