Wall clock time and date at job start Sun Mar 29 2020 23:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.46978 * 2 1 4 4 C 1.35463 * 116.99950 * 179.97438 * 3 2 1 5 5 N 1.32347 * 119.13610 * 359.97438 * 4 3 2 6 6 C 1.32597 * 120.93517 * 180.02562 * 5 4 3 7 7 Cl 1.73609 * 120.38188 * 180.02562 * 6 5 4 8 8 C 1.38386 * 119.23874 * 0.02562 * 6 5 4 9 9 C 1.39572 * 118.42403 * 359.97438 * 8 6 5 10 10 N 1.38525 * 120.49378 * 180.02562 * 9 8 6 11 11 C 1.36945 * 120.00025 * 0.02562 * 10 9 8 12 12 H 1.08005 * 119.99882 * 359.97438 * 11 10 9 13 13 C 1.38842 * 120.00119 * 179.72672 * 11 10 9 14 14 N 1.31537 * 119.99954 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00208 * 179.97438 * 13 11 10 16 16 H 1.48510 * 109.47079 * 89.99425 * 15 13 11 17 17 H 1.48496 * 109.47530 * 209.99865 * 15 13 11 18 18 H 1.48497 * 109.46950 * 330.00103 * 15 13 11 19 19 N 1.32216 * 119.14313 * 180.29948 * 4 3 2 20 20 H 1.09003 * 109.47076 * 300.00283 * 1 2 3 21 21 H 1.09001 * 109.46899 * 60.00159 * 1 2 3 22 22 H 1.08996 * 109.47182 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47094 * 240.00198 * 2 1 3 24 24 H 1.09001 * 109.46899 * 119.99840 * 2 1 3 25 25 H 1.07995 * 120.78755 * 180.02562 * 8 6 5 26 26 H 0.97005 * 120.00155 * 180.02562 * 10 9 8 27 27 H 0.97004 * 120.00318 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3492 1.5248 0.0005 5 7 4.1396 0.4632 0.0015 6 6 5.4589 0.5956 0.0026 7 17 6.4821 -0.8069 0.0033 8 6 6.0109 1.8646 0.0032 9 6 5.1503 2.9634 0.0021 10 7 5.6566 4.2528 0.0021 11 6 7.0108 4.4567 0.0027 12 1 7.6840 3.6122 0.0035 13 6 7.5183 5.7490 -0.0031 14 7 6.6984 6.7776 -0.0096 15 14 9.3655 6.0272 -0.0016 16 1 9.8572 6.0937 -1.4013 17 1 9.6734 7.3033 0.6924 18 1 10.0343 4.9054 0.7051 19 7 3.8363 2.7540 0.0066 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 7.0821 2.0014 0.0037 26 1 5.0519 5.0114 0.0017 27 1 7.0529 7.6805 -0.0139 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155530974.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:03 Heat of formation + Delta-G solvation = -14.135083 kcal Electronic energy + Delta-G solvation = -14806.980866 eV Core-core repulsion = 12011.619156 eV Total energy + Delta-G solvation = -2795.361710 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.052 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.81788 -39.52648 -37.91895 -37.21223 -34.49701 -33.48548 -32.22033 -30.75342 -27.27877 -24.85778 -24.70523 -23.01806 -20.36797 -19.80507 -18.29929 -17.69730 -17.46693 -16.60154 -16.16006 -15.58056 -15.51657 -15.20239 -14.91891 -13.87498 -13.74017 -13.59979 -13.40230 -12.87477 -12.77452 -12.50107 -12.27556 -12.21955 -12.08968 -11.57452 -11.47055 -11.14217 -10.23432 -10.07226 -9.33897 -8.67157 -6.01766 0.23509 0.45829 0.68692 1.43809 1.51428 1.57928 1.68981 2.22026 2.73199 2.94324 3.20771 3.70040 4.10511 4.13494 4.20034 4.39034 4.51498 4.62639 4.86143 4.99324 5.12120 5.21208 5.26947 5.63645 5.91157 6.31014 6.59524 7.06541 7.14518 7.59969 8.49267 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.026466 B = 0.006489 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.702758 B = 4313.863633 C = 5351.113628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.067 3.933 3 O -0.308 6.308 4 C 0.546 3.454 5 N -0.646 5.646 6 C 0.269 3.731 7 Cl -0.014 7.014 8 C -0.315 4.315 9 C 0.393 3.607 10 N -0.508 5.508 11 C -0.330 4.330 12 H 0.122 0.878 13 C -0.010 4.010 14 N -0.907 5.907 15 Si 1.010 2.990 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.252 1.252 19 N -0.634 5.634 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.109 0.891 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.152 0.848 26 H 0.400 0.600 27 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.270 -10.623 0.018 10.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.008 4.008 3 O -0.211 6.211 4 C 0.239 3.761 5 N -0.389 5.389 6 C 0.105 3.895 7 Cl 0.014 6.986 8 C -0.348 4.348 9 C 0.143 3.857 10 N -0.113 5.113 11 C -0.460 4.460 12 H 0.140 0.860 13 C -0.214 4.214 14 N -0.542 5.542 15 Si 0.831 3.169 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.176 1.176 19 N -0.377 5.377 20 H 0.083 0.917 21 H 0.083 0.917 22 H 0.127 0.873 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.170 0.830 26 H 0.235 0.765 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.113 -10.348 0.029 10.806 hybrid contribution 1.293 0.641 -0.020 1.443 sum -1.820 -9.706 0.009 9.875 Atomic orbital electron populations 1.21845 0.90245 1.04582 1.03322 1.22925 0.96386 0.78854 1.02681 1.86021 1.14382 1.33097 1.87557 1.19849 0.85118 0.83698 0.87406 1.67222 1.04632 1.33333 1.33757 1.21113 0.88351 0.87462 0.92586 1.98354 1.63656 1.40379 1.96208 1.21401 1.02066 0.90037 1.21319 1.17976 0.86457 0.86950 0.94290 1.40921 1.07812 1.02475 1.60116 1.20285 0.80954 0.94982 1.49787 0.86013 1.26454 1.06018 0.94042 0.94894 1.69787 1.38228 1.00142 1.46068 0.84666 0.74635 0.78577 0.79052 1.19256 1.20271 1.17568 1.66745 1.14207 1.23394 1.33396 0.91678 0.91680 0.87254 0.91571 0.91579 0.83019 0.76474 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 10.28 71.98 0.74 -2.05 15 2 C 0.07 1.87 6.01 71.98 0.43 2.30 15 3 O -0.31 -11.86 10.19 -87.61 -0.89 -12.75 15 4 C 0.55 23.94 8.49 180.59 1.53 25.47 15 5 N -0.65 -26.43 9.21 -304.47 -2.81 -29.23 15 6 C 0.27 10.66 7.33 84.61 0.62 11.28 15 7 Cl -0.01 -0.45 29.15 -2.72 -0.08 -0.53 15 8 C -0.32 -13.54 9.19 22.63 0.21 -13.33 15 9 C 0.39 18.87 7.67 133.13 1.02 19.90 15 10 N -0.51 -25.48 5.43 -188.73 -1.02 -26.50 15 11 C -0.33 -16.05 9.56 84.04 0.80 -15.24 15 12 H 0.12 5.48 5.73 -2.91 -0.02 5.46 15 13 C -0.01 -0.50 5.50 84.88 0.47 -0.03 15 14 N -0.91 -46.26 13.05 21.65 0.28 -45.97 15 15 Si 1.01 36.96 29.55 68.60 2.03 38.99 15 16 H -0.27 -9.56 7.11 99.48 0.71 -8.85 15 17 H -0.28 -10.06 7.11 99.48 0.71 -9.35 15 18 H -0.25 -8.68 7.11 99.48 0.71 -7.98 15 19 N -0.63 -30.72 10.50 -311.09 -3.27 -33.99 15 20 H 0.06 1.27 8.14 -2.39 -0.02 1.25 15 21 H 0.06 1.27 8.14 -2.39 -0.02 1.25 15 22 H 0.11 1.45 8.14 -2.39 -0.02 1.43 15 23 H 0.07 1.82 8.09 -2.39 -0.02 1.80 15 24 H 0.07 1.82 8.09 -2.39 -0.02 1.80 15 25 H 0.15 6.11 6.06 -2.91 -0.02 6.09 15 26 H 0.40 21.07 8.02 -92.70 -0.74 20.33 15 27 H 0.29 13.56 8.31 -92.71 -0.77 12.79 15 Total: -1.00 -56.21 261.16 0.54 -55.67 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.48 Total: 26.03 kcal Atomic # 6 Polarization: 22.47 SS G_CDS: 5.82 Total: 28.29 kcal Atomic # 7 Polarization: -128.89 SS G_CDS: -6.81 Total: -135.70 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.89 Total: -12.75 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.53 kcal Total: -56.21 0.54 -55.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155530974.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.533 kcal (2) G-P(sol) polarization free energy of solvation -56.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds