Wall clock time and date at job start Sun Mar 29 2020 23:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35993 * 116.99907 * 2 1 4 4 C 1.38827 * 120.89325 * 269.97625 * 3 2 1 5 5 Cl 1.73595 * 120.44936 * 359.97438 * 4 3 2 6 6 N 1.32616 * 119.09878 * 180.02562 * 4 3 2 7 7 C 1.31797 * 121.04600 * 359.97438 * 6 4 3 8 8 C 1.50692 * 119.01400 * 180.02562 * 7 6 4 9 9 N 1.31732 * 121.98055 * 359.97438 * 7 6 4 10 10 C 1.33034 * 120.77427 * 0.02562 * 9 7 6 11 11 N 1.38636 * 120.55457 * 179.97438 * 10 9 7 12 12 C 1.36894 * 120.00041 * 359.97438 * 11 10 9 13 13 H 1.08001 * 119.99717 * 0.02562 * 12 11 10 14 14 C 1.38825 * 119.99950 * 179.97438 * 12 11 10 15 15 N 1.31558 * 120.00219 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00179 * 180.02562 * 14 12 11 17 17 H 1.48509 * 109.46807 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47390 * 119.99703 * 16 14 12 19 19 H 1.48506 * 109.47152 * 240.00095 * 16 14 12 20 20 H 1.09006 * 109.47327 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47780 * 300.00201 * 1 2 3 22 22 H 1.08997 * 109.47238 * 60.00195 * 1 2 3 23 23 H 1.09001 * 109.47277 * 270.00293 * 8 7 6 24 24 H 1.09003 * 109.46848 * 29.99388 * 8 7 6 25 25 H 1.09000 * 109.47662 * 150.00100 * 8 7 6 26 26 H 0.96998 * 119.99904 * 180.02562 * 11 10 9 27 27 H 0.96998 * 119.99753 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 2.3703 1.8466 -1.1913 5 17 1.9936 1.1042 -2.7146 6 7 2.9725 3.0274 -1.1498 7 6 3.2645 3.6015 0.0001 8 6 3.9486 4.9441 -0.0061 9 7 2.9754 3.0373 1.1549 10 6 2.3713 1.8529 1.2014 11 7 2.0696 1.2630 2.4192 12 6 2.3939 1.8994 3.5871 13 1 2.8845 2.8612 3.5597 14 6 2.0913 1.3090 4.8065 15 7 1.4933 0.1376 4.8399 16 14 2.5333 2.1776 6.4001 17 1 3.1946 3.4711 6.0918 18 1 1.2987 2.4274 7.1866 19 1 3.4585 1.3247 7.1887 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 5.0292 4.8013 -0.0072 24 1 3.6544 5.4976 -0.8979 25 1 3.6571 5.5047 0.8821 26 1 1.6293 0.3991 2.4438 27 1 1.2816 -0.2747 5.6919 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155533805.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:27 Heat of formation + Delta-G solvation = -16.701794 kcal Electronic energy + Delta-G solvation = -15320.987210 eV Core-core repulsion = 12525.514199 eV Total energy + Delta-G solvation = -2795.473011 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.80513 -39.03537 -37.97313 -37.35828 -34.46178 -33.36647 -31.92381 -29.28380 -27.51365 -26.86687 -24.13858 -23.25402 -20.41868 -18.90314 -18.55566 -18.11844 -16.88787 -16.60966 -16.32206 -15.54503 -15.51802 -14.85221 -14.27950 -13.89571 -13.68927 -13.60260 -13.12400 -13.09040 -12.88453 -12.59981 -12.42041 -12.14714 -12.07919 -11.70091 -11.43710 -11.09847 -10.32869 -9.75676 -9.28304 -8.67929 -5.96297 0.01056 0.39411 0.73513 1.42142 1.46702 1.57364 2.17953 2.56312 2.74516 2.84214 3.21181 3.41816 3.93719 4.19663 4.28991 4.44471 4.55432 4.70615 4.86746 4.96098 4.97768 5.26515 5.45563 5.60964 6.09740 6.45188 6.62204 7.08586 7.15581 7.65188 8.47510 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.027857 B = 0.007953 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.884780 B = 3519.672351 C = 4441.342031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.323 6.323 3 C -0.115 4.115 4 C 0.233 3.767 5 Cl -0.019 7.019 6 N -0.603 5.603 7 C 0.358 3.642 8 C -0.071 4.071 9 N -0.590 5.590 10 C 0.348 3.652 11 N -0.503 5.503 12 C -0.313 4.313 13 H 0.113 0.887 14 C -0.015 4.015 15 N -0.907 5.907 16 Si 1.008 2.992 17 H -0.258 1.258 18 H -0.271 1.271 19 H -0.273 1.273 20 H 0.118 0.882 21 H 0.027 0.973 22 H 0.051 0.949 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.409 0.591 27 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.276 3.556 -6.364 7.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.237 6.237 3 C -0.174 4.174 4 C 0.066 3.934 5 Cl 0.010 6.990 6 N -0.333 5.333 7 C 0.089 3.911 8 C -0.129 4.129 9 N -0.322 5.322 10 C 0.098 3.902 11 N -0.108 5.108 12 C -0.444 4.444 13 H 0.130 0.870 14 C -0.218 4.218 15 N -0.544 5.544 16 Si 0.830 3.170 17 H -0.181 1.181 18 H -0.197 1.197 19 H -0.198 1.198 20 H 0.136 0.864 21 H 0.046 0.954 22 H 0.070 0.930 23 H 0.116 0.884 24 H 0.117 0.883 25 H 0.107 0.893 26 H 0.245 0.755 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.095 3.953 -6.025 7.207 hybrid contribution -0.871 -1.195 0.559 1.580 sum -0.776 2.758 -5.466 6.172 Atomic orbital electron populations 1.23196 0.79501 1.04336 0.99985 1.86131 1.20412 1.23257 1.93868 1.18889 1.14133 0.93581 0.90839 1.22063 0.94402 0.90535 0.86418 1.98342 1.91890 1.79817 1.28957 1.67592 1.24124 1.10695 1.30902 1.23508 0.89781 0.96519 0.81335 1.20584 1.00168 0.87480 1.04655 1.67793 1.22494 1.11399 1.30464 1.18843 0.95348 0.90167 0.85862 1.40979 1.48910 1.19004 1.01935 1.20286 1.36481 1.04979 0.82625 0.86950 1.26422 0.95672 0.96542 1.03129 1.69762 1.38813 1.16285 1.29503 0.84634 0.78311 0.78458 0.75622 1.18143 1.19663 1.19806 0.86408 0.95393 0.93033 0.88447 0.88273 0.89264 0.75479 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.82 11.13 113.37 1.26 2.08 15 2 O -0.32 -13.16 9.34 -93.47 -0.87 -14.03 15 3 C -0.11 -5.05 5.81 22.84 0.13 -4.92 15 4 C 0.23 9.51 7.34 84.72 0.62 10.13 15 5 Cl -0.02 -0.62 28.77 -2.72 -0.08 -0.70 15 6 N -0.60 -24.30 10.32 -178.67 -1.84 -26.14 15 7 C 0.36 14.20 7.64 138.77 1.06 15.26 15 8 C -0.07 -1.96 10.31 71.23 0.73 -1.23 15 9 N -0.59 -27.15 9.14 -185.05 -1.69 -28.84 15 10 C 0.35 16.79 7.48 133.21 1.00 17.78 15 11 N -0.50 -25.57 5.41 -188.38 -1.02 -26.59 15 12 C -0.31 -16.18 9.72 84.04 0.82 -15.36 15 13 H 0.11 5.85 7.11 -2.91 -0.02 5.83 15 14 C -0.01 -0.73 5.50 84.87 0.47 -0.26 15 15 N -0.91 -46.62 13.05 21.65 0.28 -46.34 15 16 Si 1.01 38.97 29.55 68.60 2.03 41.00 15 17 H -0.26 -9.68 7.11 99.48 0.71 -8.97 15 18 H -0.27 -10.16 7.11 99.48 0.71 -9.45 15 19 H -0.27 -10.29 7.11 99.48 0.71 -9.59 15 20 H 0.12 3.12 8.14 -2.38 -0.02 3.10 15 21 H 0.03 0.98 8.14 -2.39 -0.02 0.97 15 22 H 0.05 1.55 8.14 -2.39 -0.02 1.53 15 23 H 0.10 2.37 8.14 -2.39 -0.02 2.35 15 24 H 0.10 2.33 8.14 -2.39 -0.02 2.31 15 25 H 0.09 2.34 8.14 -2.39 -0.02 2.32 15 26 H 0.41 21.04 7.33 -92.71 -0.68 20.36 15 27 H 0.29 13.58 8.31 -92.71 -0.77 12.81 15 Total: -1.00 -58.02 263.44 3.43 -54.59 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.53 Total: 23.57 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 6.09 Total: 23.49 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -4.27 Total: -127.91 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.87 Total: -14.03 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -58.02 3.43 -54.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533805.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.884 kcal (2) G-P(sol) polarization free energy of solvation -58.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds