Wall clock time and date at job start Sun Mar 29 2020 22:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46873 * 2 1 4 4 C 1.52999 * 109.47031 * 120.00317 * 2 1 3 5 5 C 1.53003 * 109.46778 * 183.98251 * 4 2 1 6 6 C 1.50707 * 109.46956 * 175.93830 * 5 4 2 7 7 H 1.07997 * 119.99799 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99759 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00270 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99751 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46606 * 60.00236 * 10 8 6 12 12 H 1.48499 * 109.46889 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47246 * 300.00350 * 10 8 6 14 14 N 1.46903 * 109.47071 * 240.00056 * 2 1 3 15 15 C 1.47014 * 110.99830 * 72.11766 * 14 2 1 16 16 C 1.53100 * 109.26080 * 177.60585 * 15 14 2 17 17 O 1.43015 * 109.25488 * 56.84704 * 16 15 14 18 18 C 1.43016 * 113.74133 * 301.33261 * 17 16 15 19 19 H 1.08999 * 109.50689 * 298.69595 * 18 17 16 20 20 C 1.52998 * 109.51047 * 178.60700 * 18 17 16 21 21 N 1.46893 * 109.47221 * 64.99748 * 20 18 17 22 22 C 1.47009 * 110.99965 * 308.48424 * 14 2 1 23 23 H 1.09002 * 109.47372 * 300.00082 * 1 2 3 24 24 H 1.08999 * 109.47406 * 59.99906 * 1 2 3 25 25 H 1.09004 * 109.47385 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47323 * 303.97707 * 4 2 1 27 27 H 1.08997 * 109.47223 * 63.98344 * 4 2 1 28 28 H 1.09001 * 109.47127 * 295.93577 * 5 4 2 29 29 H 1.08994 * 109.47340 * 55.93728 * 5 4 2 30 30 H 0.97000 * 119.99678 * 179.97438 * 9 8 6 31 31 H 1.09002 * 109.50962 * 297.54380 * 15 14 2 32 32 H 1.09002 * 109.50928 * 57.67128 * 15 14 2 33 33 H 1.08993 * 109.50493 * 296.91556 * 16 15 14 34 34 H 1.09000 * 109.50891 * 176.78104 * 16 15 14 35 35 H 1.09003 * 109.47370 * 184.99974 * 20 18 17 36 36 H 1.09008 * 109.47118 * 304.99861 * 20 18 17 37 37 H 1.00900 * 110.99981 * 56.04703 * 21 20 18 38 38 H 1.00899 * 111.00391 * 180.02562 * 21 20 18 39 39 H 1.09003 * 109.50859 * 62.45868 * 22 14 2 40 40 H 1.08996 * 109.54160 * 302.34490 * 22 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5667 -0.6351 1.3002 6 6 4.0625 -1.2580 2.5799 7 1 3.3590 -1.6733 3.2862 8 6 5.4142 -1.2975 2.8488 9 7 6.2709 -0.7922 1.9884 10 14 6.0287 -2.0689 4.4353 11 1 5.6106 -3.4929 4.4875 12 1 7.5106 -1.9865 4.4842 13 1 5.4533 -1.3412 5.5948 14 7 2.0196 -0.6925 -1.1995 15 6 1.7979 0.1201 -2.4044 16 6 2.3751 -0.6106 -3.6196 17 8 1.7744 -1.9045 -3.7211 18 6 1.9713 -2.7230 -2.5650 19 1 3.0377 -2.8926 -2.4164 20 6 1.2632 -4.0648 -2.7622 21 7 1.8974 -4.7953 -3.8676 22 6 1.3900 -2.0136 -1.3390 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.6196 -0.2504 2.1378 27 1 1.7361 -1.7675 1.2142 28 1 3.9894 -1.1686 0.4489 29 1 3.8731 0.4102 1.2625 30 1 7.2218 -0.8197 2.1778 31 1 0.7285 0.2753 -2.5470 32 1 2.2940 1.0839 -2.2898 33 1 3.4532 -0.7181 -3.5014 34 1 2.1626 -0.0388 -4.5230 35 1 1.3381 -4.6531 -1.8477 36 1 0.2131 -3.8905 -2.9971 37 1 2.8860 -4.9130 -3.7032 38 1 1.4471 -5.6856 -4.0183 39 1 0.3140 -1.8926 -1.4647 40 1 1.5878 -2.6078 -0.4469 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172480993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:27 Heat of formation + Delta-G solvation = -75.189441 kcal Electronic energy + Delta-G solvation = -18512.004906 eV Core-core repulsion = 15746.211710 eV Total energy + Delta-G solvation = -2765.793195 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94241 -38.10813 -35.70980 -35.31285 -33.29202 -31.78029 -30.85240 -27.89388 -26.99787 -25.86134 -23.71690 -22.82334 -21.77225 -20.38806 -18.37326 -17.73131 -17.59005 -16.55372 -16.32588 -16.12712 -15.79431 -15.69081 -15.24806 -14.81147 -14.54050 -14.37449 -14.05150 -13.60988 -13.33831 -13.17768 -12.97911 -12.85451 -12.75225 -12.37155 -12.34153 -12.17227 -11.76581 -11.44803 -11.37343 -11.18803 -10.99909 -10.52024 -10.49178 -9.59679 -9.09736 -8.14539 -6.25459 1.39213 1.42137 1.49996 2.42673 2.76460 2.90517 3.17747 3.56987 3.90576 4.00899 4.04940 4.15480 4.18641 4.23830 4.32206 4.43347 4.47676 4.58941 4.64137 4.64785 4.76321 4.84008 4.87506 4.97763 5.03069 5.04718 5.10938 5.27050 5.43102 5.57405 5.86566 5.99319 6.12233 6.14333 6.21764 6.32580 6.34843 6.60547 6.94178 7.42943 8.96507 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.006152 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.851081 B = 4550.156145 C = 5056.602729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.086 3.914 3 H 0.069 0.931 4 C -0.090 4.090 5 C 0.042 3.958 6 C -0.544 4.544 7 H 0.056 0.944 8 C 0.000 4.000 9 N -0.932 5.932 10 Si 0.960 3.040 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.267 1.267 14 N -0.543 5.543 15 C 0.020 3.980 16 C 0.063 3.937 17 O -0.378 6.378 18 C 0.098 3.902 19 H 0.042 0.958 20 C 0.076 3.924 21 N -0.851 5.851 22 C 0.029 3.971 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.049 0.951 28 H -0.001 1.001 29 H -0.021 1.021 30 H 0.261 0.739 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.120 0.880 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.343 0.657 38 H 0.353 0.647 39 H 0.055 0.945 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.062 -3.117 -9.468 15.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.022 4.022 3 H 0.087 0.913 4 C -0.127 4.127 5 C 0.005 3.995 6 C -0.582 4.582 7 H 0.074 0.926 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.192 1.192 14 N -0.268 5.268 15 C -0.108 4.108 16 C -0.014 4.014 17 O -0.297 6.297 18 C 0.039 3.961 19 H 0.060 0.940 20 C -0.055 4.055 21 N -0.382 5.382 22 C -0.099 4.099 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.018 0.982 29 H -0.003 1.003 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.138 0.862 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.156 0.844 38 H 0.167 0.833 39 H 0.073 0.927 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.716 -2.607 -10.060 15.661 hybrid contribution 0.429 -0.601 1.746 1.896 sum -11.287 -3.208 -8.314 14.381 Atomic orbital electron populations 1.22355 0.95737 1.02418 1.02606 1.21718 0.93462 0.97330 0.89710 0.91304 1.21511 0.96786 0.99021 0.95431 1.18776 0.91817 0.94114 0.94764 1.21772 0.92338 1.38286 1.05781 0.92587 1.25940 0.97378 0.96140 1.00285 1.70116 1.02344 1.47177 1.37637 0.85590 0.77006 0.79234 0.79734 1.19271 1.20949 1.19218 1.62253 1.58604 1.03288 1.02661 1.22808 1.00042 0.97577 0.90410 1.22736 0.96597 0.83877 0.98186 1.88004 1.76890 1.25944 1.38880 1.22145 0.98335 0.90971 0.84643 0.94026 1.21685 0.99053 0.91490 0.93311 1.58552 1.08087 1.26270 1.45328 1.22697 0.97299 0.91273 0.98650 0.91278 0.91929 0.92059 0.92812 0.93236 0.98249 1.00284 0.93019 0.93150 0.89762 0.93987 0.86199 0.92863 0.89901 0.84437 0.83278 0.92701 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.47 8.39 71.98 0.60 -3.86 16 2 C 0.09 2.90 2.31 44.91 0.10 3.00 16 3 H 0.07 2.43 8.00 -2.39 -0.02 2.41 16 4 C -0.09 -3.70 4.57 30.59 0.14 -3.56 16 5 C 0.04 2.29 4.80 29.85 0.14 2.43 16 6 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 7 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 8 C 0.00 0.00 5.46 84.65 0.46 0.47 16 9 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 10 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 14 N -0.54 -18.23 4.14 -869.96 -3.61 -21.83 16 15 C 0.02 0.54 5.41 86.31 0.47 1.01 16 16 C 0.06 1.70 7.01 72.02 0.50 2.20 16 17 O -0.38 -11.28 10.42 -148.98 -1.55 -12.83 16 18 C 0.10 2.84 2.98 30.63 0.09 2.93 16 19 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 20 C 0.08 1.75 6.46 86.30 0.56 2.31 16 21 N -0.85 -18.15 9.57 -186.72 -1.79 -19.93 16 22 C 0.03 0.88 4.04 86.32 0.35 1.23 16 23 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.06 1.45 6.82 -2.39 -0.02 1.43 16 25 H 0.06 1.53 6.37 -2.39 -0.02 1.52 16 26 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.05 1.99 6.43 -2.39 -0.02 1.97 16 28 H 0.00 -0.06 7.84 -2.39 -0.02 -0.07 16 29 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 30 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 31 H 0.05 1.27 6.81 -2.39 -0.02 1.25 16 32 H 0.08 2.28 8.07 -2.39 -0.02 2.26 16 33 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.34 7.15 8.99 -89.69 -0.81 6.34 16 38 H 0.35 5.68 9.08 -89.69 -0.81 4.86 16 39 H 0.05 1.48 6.36 -2.39 -0.02 1.47 16 40 H 0.08 2.46 6.39 -2.39 -0.02 2.44 16 Total: -1.00 -67.88 311.17 -1.58 -69.46 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -0.60 Total: 19.17 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 3.65 Total: -23.15 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -5.11 Total: -99.60 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -1.55 Total: -12.83 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -67.88 -1.58 -69.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.727 kcal (2) G-P(sol) polarization free energy of solvation -67.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds