Wall clock time and date at job start Sun Mar 29 2020 23:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38208 * 119.94455 * 2 1 4 4 N 1.32247 * 120.18830 * 180.02562 * 3 2 1 5 5 C 1.31954 * 120.08270 * 359.65920 * 4 3 2 6 6 C 1.39292 * 119.89594 * 0.62117 * 5 4 3 7 7 N 1.39005 * 120.09658 * 179.68385 * 6 5 4 8 8 S 1.65597 * 119.99713 * 359.71617 * 7 6 5 9 9 O 1.42099 * 106.40164 * 178.54270 * 8 7 6 10 10 O 1.42095 * 106.40491 * 311.46725 * 8 7 6 11 11 C 1.76204 * 107.21524 * 65.00430 * 8 7 6 12 12 H 1.07998 * 120.00409 * 359.97438 * 11 8 7 13 13 C 1.37881 * 119.99836 * 179.97438 * 11 8 7 14 14 N 1.31516 * 120.00086 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 120.00073 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.46815 * 90.00365 * 15 13 11 17 17 H 1.48499 * 109.47319 * 210.00137 * 15 13 11 18 18 H 1.48501 * 109.47111 * 330.00617 * 15 13 11 19 19 N 1.32221 * 119.94935 * 179.97438 * 2 1 3 20 20 H 1.09001 * 109.47192 * 270.02216 * 1 2 3 21 21 H 1.09006 * 109.47540 * 30.02250 * 1 2 3 22 22 H 1.09002 * 109.47304 * 150.02358 * 1 2 3 23 23 H 1.08001 * 119.90702 * 359.97438 * 3 2 1 24 24 H 1.08001 * 120.05237 * 180.30017 * 5 4 3 25 25 H 0.96999 * 120.00158 * 179.72319 * 7 6 5 26 26 H 0.96998 * 120.00077 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1976 0.0000 4 7 3.5193 1.2032 -0.0005 5 6 4.1856 0.0643 0.0058 6 6 3.4938 -1.1448 -0.0002 7 7 4.1916 -2.3470 -0.0002 8 16 5.8475 -2.3432 -0.0003 9 8 6.2519 -3.7050 0.0343 10 8 6.2467 -1.4397 -1.0218 11 6 6.3675 -1.6309 1.5251 12 1 5.6333 -1.2972 2.2434 13 6 7.7119 -1.4994 1.8017 14 7 8.6060 -1.9052 0.9268 15 14 8.2632 -0.7435 3.4185 16 1 8.4116 -1.8119 4.4392 17 1 9.5667 -0.0586 3.2258 18 1 7.2496 0.2407 3.8759 19 7 2.1670 -1.1456 0.0005 20 1 -0.3633 0.0004 1.0277 21 1 -0.3634 0.8898 -0.5142 22 1 -0.3634 -0.8902 -0.5135 23 1 1.6544 2.1315 -0.0004 24 1 5.2655 0.0694 0.0102 25 1 3.7085 -3.1882 -0.0003 26 1 9.5518 -1.8130 1.1216 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192929249.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:10 Heat of formation + Delta-G solvation = -73.168019 kcal Electronic energy + Delta-G solvation = -15496.482924 eV Core-core repulsion = 12700.605060 eV Total energy + Delta-G solvation = -2795.877864 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.046 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.16348 -37.82055 -36.93351 -36.45542 -35.41942 -35.28557 -32.10896 -28.89115 -28.25414 -25.15164 -24.07680 -21.19711 -19.86411 -19.52734 -18.49169 -17.86583 -17.43199 -16.90818 -16.44093 -15.98559 -15.87312 -14.67082 -14.22397 -14.10057 -13.90167 -13.45078 -13.22796 -13.11045 -13.04856 -12.86878 -12.74807 -12.63039 -12.53003 -12.33481 -11.59672 -11.30112 -11.06292 -10.21721 -9.53505 -8.85150 -7.61253 -0.20329 -0.13713 0.12683 1.33025 1.34200 1.50824 2.10869 2.34836 2.50397 2.64339 3.13057 3.25874 3.42162 3.47769 3.95121 4.00286 4.25740 4.46137 4.65750 4.85476 4.91900 5.13053 5.18369 5.42666 5.75875 5.85379 6.30843 6.67613 6.76462 8.12367 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.030854 B = 0.008762 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.295522 B = 3194.873430 C = 3679.747948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.114 3.886 3 C 0.006 3.994 4 N -0.419 5.419 5 C -0.025 4.025 6 C 0.336 3.664 7 N -1.030 6.030 8 S 2.709 3.291 9 O -1.017 7.017 10 O -1.014 7.014 11 C -1.031 5.031 12 H 0.119 0.881 13 C 0.079 3.921 14 N -0.884 5.884 15 Si 0.992 3.008 16 H -0.252 1.252 17 H -0.258 1.258 18 H -0.252 1.252 19 N -0.493 5.493 20 H 0.102 0.898 21 H 0.116 0.884 22 H 0.079 0.921 23 H 0.217 0.783 24 H 0.166 0.834 25 H 0.431 0.569 26 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.819 5.681 2.079 15.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.029 4.029 3 C -0.156 4.156 4 N -0.132 5.132 5 C -0.189 4.189 6 C 0.101 3.899 7 N -0.775 5.775 8 S 2.810 3.190 9 O -1.007 7.007 10 O -1.004 7.004 11 C -1.165 5.165 12 H 0.137 0.863 13 C -0.136 4.136 14 N -0.514 5.514 15 Si 0.809 3.191 16 H -0.177 1.177 17 H -0.182 1.182 18 H -0.176 1.176 19 N -0.216 5.216 20 H 0.120 0.880 21 H 0.134 0.866 22 H 0.098 0.902 23 H 0.234 0.766 24 H 0.182 0.818 25 H 0.267 0.733 26 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.923 5.346 1.231 14.039 hybrid contribution 0.487 -0.360 0.923 1.104 sum -12.436 4.986 2.154 13.570 Atomic orbital electron populations 1.20892 0.83522 1.05608 1.05107 1.23057 1.00401 0.87700 0.91699 1.24267 0.89752 1.01074 1.00518 1.68349 1.10427 1.27586 1.06833 1.23728 1.02667 0.87855 1.04611 1.19010 0.90393 0.86550 0.93982 1.53831 1.27549 1.11441 1.84653 1.00731 0.68689 0.72941 0.76640 1.93365 1.78930 1.38746 1.89641 1.93367 1.79574 1.66093 1.61357 1.30581 1.01445 1.58698 1.25804 0.86319 1.25925 0.94634 0.90592 1.02416 1.69944 1.04860 1.39511 1.37084 0.85098 0.78841 0.79260 0.75860 1.17653 1.18193 1.17558 1.67918 1.05361 1.31938 1.16385 0.88012 0.86557 0.90200 0.76628 0.81757 0.73278 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 10.19 71.23 0.73 -0.58 15 2 C 0.11 2.99 6.78 42.49 0.29 3.28 15 3 C 0.01 0.16 10.86 84.62 0.92 1.08 15 4 N -0.42 -15.53 10.49 -194.66 -2.04 -17.57 15 5 C -0.03 -1.10 9.64 84.93 0.82 -0.28 15 6 C 0.34 13.83 7.58 133.02 1.01 14.84 15 7 N -1.03 -43.96 5.87 -55.18 -0.32 -44.29 15 8 S 2.71 143.75 4.56 -56.49 -0.26 143.50 15 9 O -1.02 -59.02 18.02 -128.00 -2.31 -61.33 15 10 O -1.01 -58.66 15.64 -128.00 -2.00 -60.66 15 11 C -1.03 -55.25 8.33 67.74 0.56 -54.68 15 12 H 0.12 5.88 7.81 -2.91 -0.02 5.85 15 13 C 0.08 4.25 5.46 84.66 0.46 4.71 15 14 N -0.88 -50.47 13.19 21.45 0.28 -50.19 15 15 Si 0.99 40.23 29.54 68.60 2.03 42.25 15 16 H -0.25 -9.65 7.11 99.48 0.71 -8.94 15 17 H -0.26 -9.78 7.11 99.48 0.71 -9.07 15 18 H -0.25 -9.80 7.11 99.48 0.71 -9.09 15 19 N -0.49 -16.99 10.45 -180.74 -1.89 -18.88 15 20 H 0.10 1.11 8.14 -2.39 -0.02 1.09 15 21 H 0.12 0.84 8.08 -2.38 -0.02 0.82 15 22 H 0.08 1.16 8.14 -2.39 -0.02 1.14 15 23 H 0.22 3.33 8.06 -2.91 -0.02 3.31 15 24 H 0.17 8.16 4.76 -2.91 -0.01 8.15 15 25 H 0.43 15.79 8.95 -96.75 -0.87 14.92 15 26 H 0.30 15.50 8.31 -92.71 -0.77 14.73 15 Total: -1.00 -74.53 250.19 -1.36 -75.89 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.37 Total: 22.91 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 4.79 Total: -31.63 kcal Atomic # 7 Polarization: -126.95 SS G_CDS: -3.97 Total: -130.92 kcal Atomic # 8 Polarization: -117.68 SS G_CDS: -4.31 Total: -121.99 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.25 kcal Atomic # 16 Polarization: 143.75 SS G_CDS: -0.26 Total: 143.50 kcal Total: -74.53 -1.36 -75.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192929249.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.724 kcal (2) G-P(sol) polarization free energy of solvation -74.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds