Wall clock time and date at job start Sun Mar 29 2020 23:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 120.00025 * 2 1 4 4 H 1.48496 * 109.46809 * 270.00377 * 3 2 1 5 5 H 1.48496 * 109.46619 * 30.00104 * 3 2 1 6 6 H 1.48500 * 109.47192 * 150.00152 * 3 2 1 7 7 C 1.37881 * 120.00530 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00256 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99539 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.39722 * 66.46621 * 9 7 2 11 11 O 1.42091 * 106.40648 * 293.54740 * 9 7 2 12 12 N 1.65599 * 107.21671 * 180.02562 * 9 7 2 13 13 C 1.46507 * 119.99938 * 65.00707 * 12 9 7 14 14 C 1.50698 * 109.47476 * 164.99614 * 13 12 9 15 15 C 1.38597 * 120.79551 * 89.99510 * 14 13 12 16 16 N 1.32337 * 119.09979 * 179.72102 * 15 14 13 17 17 C 1.31795 * 120.82153 * 0.28399 * 16 15 14 18 18 N 1.31796 * 121.75342 * 0.02562 * 17 16 15 19 19 C 1.32339 * 120.81472 * 359.96878 * 18 17 16 20 20 H 0.96997 * 120.00406 * 359.97438 * 1 2 3 21 21 H 0.97001 * 120.00877 * 245.00065 * 12 9 7 22 22 H 1.09001 * 109.46846 * 44.99730 * 13 12 9 23 23 H 1.08997 * 109.46847 * 285.00344 * 13 12 9 24 24 H 1.08002 * 120.45366 * 0.02562 * 15 14 13 25 25 H 1.07992 * 119.12500 * 179.97438 * 17 16 15 26 26 H 1.08007 * 120.44447 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4512 -2.7949 -1.2502 11 8 0.4518 -2.7955 1.2493 12 7 2.2484 -3.9353 -0.0005 13 6 3.1394 -4.1088 1.1495 14 6 3.7948 -5.4639 1.0773 15 6 5.0018 -5.6342 0.4177 16 7 5.5503 -6.8379 0.3798 17 6 4.9604 -7.8672 0.9540 18 7 3.8097 -7.7440 1.5846 19 6 3.2021 -6.5710 1.6636 20 1 -0.4850 0.8400 0.0004 21 1 2.3174 -4.5325 -0.7618 22 1 2.5622 -4.0330 2.0710 23 1 3.9054 -3.3335 1.1358 24 1 5.4906 -4.7949 -0.0546 25 1 5.4322 -8.8374 0.9059 26 1 2.2589 -6.4770 2.1814 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192988010.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:54 Heat of formation + Delta-G solvation = -47.054890 kcal Electronic energy + Delta-G solvation = -15036.658578 eV Core-core repulsion = 12241.913065 eV Total energy + Delta-G solvation = -2794.745513 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.046 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.04285 -35.61911 -35.13655 -34.02642 -33.74825 -33.14095 -31.40557 -26.22272 -26.11017 -24.62387 -22.49590 -19.11560 -17.73350 -17.68827 -17.40489 -16.41014 -15.77567 -15.01680 -14.55062 -14.16528 -13.81945 -13.69835 -13.59577 -13.28608 -12.92778 -12.04840 -11.39222 -11.25613 -11.11426 -10.87725 -10.64473 -10.49720 -10.36495 -10.27023 -9.53186 -9.36050 -9.29610 -9.10457 -8.60940 -6.75378 -5.38263 0.76679 1.00458 2.27525 3.03637 3.10921 3.16248 3.70522 4.02497 4.06569 4.15373 4.56968 4.59332 4.66661 4.80091 4.85334 5.34995 5.60390 5.74024 5.85798 6.01824 6.31068 6.36204 6.66898 6.87399 7.26585 7.74494 7.90323 7.97729 8.83671 10.18924 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.041060 B = 0.006382 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.758215 B = 4386.508491 C = 4757.290003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.133 3.867 3 Si 0.921 3.079 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.262 1.262 7 C -1.021 5.021 8 H 0.103 0.897 9 S 2.714 3.286 10 O -1.004 7.004 11 O -1.005 7.005 12 N -1.135 6.135 13 C 0.174 3.826 14 C -0.192 4.192 15 C 0.159 3.841 16 N -0.523 5.523 17 C 0.285 3.715 18 N -0.522 5.522 19 C 0.162 3.838 20 H 0.291 0.709 21 H 0.402 0.598 22 H 0.091 0.909 23 H 0.077 0.923 24 H 0.172 0.828 25 H 0.194 0.806 26 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.126 -8.219 2.296 12.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.186 1.186 7 C -1.155 5.155 8 H 0.121 0.879 9 S 2.814 3.186 10 O -0.994 6.994 11 O -0.995 6.995 12 N -0.889 5.889 13 C 0.046 3.954 14 C -0.197 4.197 15 C -0.007 4.007 16 N -0.236 5.236 17 C -0.003 4.003 18 N -0.235 5.235 19 C -0.005 4.005 20 H 0.102 0.898 21 H 0.233 0.767 22 H 0.109 0.891 23 H 0.095 0.905 24 H 0.189 0.811 25 H 0.210 0.790 26 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 8.417 -9.053 2.437 12.599 hybrid contribution 0.653 1.758 -0.338 1.906 sum 9.070 -7.295 2.099 11.827 Atomic orbital electron populations 1.69887 1.06800 1.30833 1.39862 1.24749 0.94468 1.00865 0.88474 0.86152 0.80129 0.80026 0.79183 1.19212 1.19976 1.18642 1.30522 1.06086 1.11755 1.67116 0.87892 1.00474 0.72039 0.73203 0.72884 1.93386 1.72885 1.87540 1.45595 1.93359 1.72724 1.87450 1.45926 1.56134 1.55526 1.51309 1.25893 1.19861 0.93591 0.91244 0.90742 1.21913 0.97891 0.98835 1.01063 1.23292 0.91084 0.94986 0.91345 1.68457 1.35386 1.00301 1.19484 1.24972 0.88413 0.98013 0.88869 1.68473 1.10602 1.26705 1.17770 1.23336 0.98172 0.86840 0.92113 0.89811 0.76706 0.89115 0.90512 0.81133 0.78963 0.81053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.20 13.19 55.43 0.73 -23.47 15 2 C 0.13 3.58 5.46 -17.82 -0.10 3.48 15 3 Si 0.92 19.89 29.54 -169.99 -5.02 14.86 15 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 15 7 C -1.02 -26.70 9.72 30.60 0.30 -26.40 15 8 H 0.10 2.41 7.81 -52.49 -0.41 2.00 15 9 S 2.71 68.01 5.02 -107.50 -0.54 67.47 15 10 O -1.00 -28.45 18.02 -57.17 -1.03 -29.48 15 11 O -1.00 -27.75 17.49 -57.17 -1.00 -28.75 15 12 N -1.13 -20.48 5.99 -11.65 -0.07 -20.55 15 13 C 0.17 2.57 6.39 -5.19 -0.03 2.54 15 14 C -0.19 -2.45 5.31 -104.36 -0.55 -3.00 15 15 C 0.16 1.91 11.01 -17.20 -0.19 1.72 15 16 N -0.52 -6.49 10.44 -14.58 -0.15 -6.64 15 17 C 0.29 3.28 12.29 -92.15 -1.13 2.14 15 18 N -0.52 -6.66 10.44 -14.58 -0.15 -6.81 15 19 C 0.16 2.05 11.01 -17.20 -0.19 1.86 15 20 H 0.29 7.51 8.31 -40.82 -0.34 7.17 15 21 H 0.40 6.47 8.64 -34.48 -0.30 6.17 15 22 H 0.09 1.37 7.71 -51.93 -0.40 0.97 15 23 H 0.08 1.03 8.10 -51.93 -0.42 0.61 15 24 H 0.17 1.67 8.06 -52.49 -0.42 1.25 15 25 H 0.19 1.54 8.06 -52.49 -0.42 1.12 15 26 H 0.17 1.92 8.06 -52.48 -0.42 1.49 15 LS Contribution 257.39 15.07 3.88 3.88 Total: -1.00 -34.72 257.39 -7.19 -41.91 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -1.93 Total: 5.23 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -1.90 Total: -17.66 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.36 Total: -57.47 kcal Atomic # 8 Polarization: -56.20 SS G_CDS: -2.03 Total: -58.23 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 68.01 SS G_CDS: -0.54 Total: 67.47 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -34.72 -7.19 -41.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988010.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.146 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds