Wall clock time and date at job start Sun Mar 29 2020 23:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 120.00025 * 2 1 4 4 H 1.48496 * 109.46809 * 270.00377 * 3 2 1 5 5 H 1.48496 * 109.46619 * 30.00104 * 3 2 1 6 6 H 1.48500 * 109.47192 * 150.00152 * 3 2 1 7 7 C 1.37881 * 120.00530 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00256 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99539 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.39722 * 66.46621 * 9 7 2 11 11 O 1.42091 * 106.40648 * 293.54740 * 9 7 2 12 12 N 1.65599 * 107.21671 * 180.02562 * 9 7 2 13 13 C 1.46507 * 119.99938 * 65.00707 * 12 9 7 14 14 C 1.50698 * 109.47476 * 164.99614 * 13 12 9 15 15 C 1.38597 * 120.79551 * 89.99510 * 14 13 12 16 16 N 1.32337 * 119.09979 * 179.72102 * 15 14 13 17 17 C 1.31795 * 120.82153 * 0.28399 * 16 15 14 18 18 N 1.31796 * 121.75342 * 0.02562 * 17 16 15 19 19 C 1.32339 * 120.81472 * 359.96878 * 18 17 16 20 20 H 0.96997 * 120.00406 * 359.97438 * 1 2 3 21 21 H 0.97001 * 120.00877 * 245.00065 * 12 9 7 22 22 H 1.09001 * 109.46846 * 44.99730 * 13 12 9 23 23 H 1.08997 * 109.46847 * 285.00344 * 13 12 9 24 24 H 1.08002 * 120.45366 * 0.02562 * 15 14 13 25 25 H 1.07992 * 119.12500 * 179.97438 * 17 16 15 26 26 H 1.08007 * 120.44447 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4512 -2.7949 -1.2502 11 8 0.4518 -2.7955 1.2493 12 7 2.2484 -3.9353 -0.0005 13 6 3.1394 -4.1088 1.1495 14 6 3.7948 -5.4639 1.0773 15 6 5.0018 -5.6342 0.4177 16 7 5.5503 -6.8379 0.3798 17 6 4.9604 -7.8672 0.9540 18 7 3.8097 -7.7440 1.5846 19 6 3.2021 -6.5710 1.6636 20 1 -0.4850 0.8400 0.0004 21 1 2.3174 -4.5325 -0.7618 22 1 2.5622 -4.0330 2.0710 23 1 3.9054 -3.3335 1.1358 24 1 5.4906 -4.7949 -0.0546 25 1 5.4322 -8.8374 0.9059 26 1 2.2589 -6.4770 2.1814 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192988010.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:54 Heat of formation + Delta-G solvation = -75.303045 kcal Electronic energy + Delta-G solvation = -15037.883510 eV Core-core repulsion = 12241.913065 eV Total energy + Delta-G solvation = -2795.970445 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.046 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.98891 -37.44085 -36.69826 -36.12214 -35.14508 -34.68945 -32.58892 -28.22876 -27.28653 -25.56850 -23.57300 -21.04271 -19.39217 -18.59287 -18.53145 -18.25798 -17.38641 -16.76213 -15.93013 -15.69081 -15.44524 -14.80325 -14.58682 -14.52648 -14.21859 -13.92648 -13.27525 -12.98802 -12.77625 -12.49256 -12.41187 -12.27192 -11.82929 -11.77484 -11.22297 -11.01561 -10.57434 -10.36769 -10.11730 -8.72849 -7.45476 -0.23120 0.05835 0.43373 1.38082 1.38720 1.54232 2.23539 2.61495 2.73359 3.10044 3.23074 3.24721 3.59415 3.67451 3.74730 3.88660 4.45934 4.49823 4.65660 4.69111 4.98528 5.03864 5.32502 5.40580 5.92108 5.93517 6.31167 6.81978 7.05403 8.23438 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.041060 B = 0.006382 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.758215 B = 4386.508491 C = 4757.290003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.069 3.931 3 Si 0.990 3.010 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.243 1.243 7 C -1.038 5.038 8 H 0.127 0.873 9 S 2.722 3.278 10 O -1.046 7.046 11 O -1.040 7.040 12 N -1.118 6.118 13 C 0.169 3.831 14 C -0.197 4.197 15 C 0.164 3.836 16 N -0.535 5.535 17 C 0.287 3.713 18 N -0.537 5.537 19 C 0.156 3.844 20 H 0.298 0.702 21 H 0.413 0.587 22 H 0.085 0.915 23 H 0.096 0.904 24 H 0.193 0.807 25 H 0.225 0.775 26 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.387 -8.079 2.365 14.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.166 1.166 7 C -1.172 5.172 8 H 0.145 0.855 9 S 2.823 3.177 10 O -1.036 7.036 11 O -1.029 7.029 12 N -0.877 5.877 13 C 0.042 3.958 14 C -0.203 4.203 15 C -0.002 4.002 16 N -0.248 5.248 17 C 0.000 4.000 18 N -0.251 5.251 19 C -0.010 4.010 20 H 0.108 0.892 21 H 0.247 0.753 22 H 0.103 0.897 23 H 0.114 0.886 24 H 0.210 0.790 25 H 0.241 0.759 26 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 10.678 -8.945 2.506 14.153 hybrid contribution 0.003 1.570 -0.345 1.607 sum 10.682 -7.375 2.160 13.159 Atomic orbital electron populations 1.69991 1.08849 1.32303 1.41536 1.26009 0.95312 1.05432 0.87600 0.85125 0.79311 0.74868 0.79856 1.18259 1.19160 1.16589 1.30914 1.07494 1.12254 1.66504 0.85475 0.99849 0.72502 0.73901 0.71448 1.93321 1.74819 1.88382 1.47090 1.93309 1.74378 1.88186 1.47054 1.55464 1.54982 1.49807 1.27474 1.20050 0.93401 0.93298 0.89007 1.21635 0.98477 0.97612 1.02531 1.23652 0.90576 0.95616 0.90394 1.68566 1.35620 1.00579 1.20032 1.25657 0.87839 0.99085 0.87412 1.68550 1.11329 1.26611 1.18579 1.23547 0.98508 0.87019 0.91926 0.89197 0.75332 0.89684 0.88584 0.79016 0.75870 0.80399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.03 13.19 21.45 0.28 -51.75 15 2 C 0.07 3.70 5.46 84.66 0.46 4.16 15 3 Si 0.99 39.45 29.54 68.60 2.03 41.47 15 4 H -0.26 -9.83 7.11 99.48 0.71 -9.13 15 5 H -0.27 -10.19 7.11 99.48 0.71 -9.48 15 6 H -0.24 -8.83 7.11 99.48 0.71 -8.13 15 7 C -1.04 -53.51 9.72 67.74 0.66 -52.85 15 8 H 0.13 5.69 7.81 -2.91 -0.02 5.66 15 9 S 2.72 137.54 5.02 -56.49 -0.28 137.26 15 10 O -1.05 -60.53 18.02 -128.00 -2.31 -62.83 15 11 O -1.04 -58.56 17.49 -128.00 -2.24 -60.80 15 12 N -1.12 -39.46 5.99 -190.78 -1.14 -40.61 15 13 C 0.17 4.77 6.39 85.63 0.55 5.31 15 14 C -0.20 -4.67 5.31 -19.69 -0.10 -4.78 15 15 C 0.16 3.52 11.01 84.70 0.93 4.45 15 16 N -0.53 -11.91 10.44 -200.05 -2.09 -14.00 15 17 C 0.29 5.91 12.29 180.88 2.22 8.13 15 18 N -0.54 -12.76 10.44 -200.05 -2.09 -14.85 15 19 C 0.16 3.74 11.01 84.70 0.93 4.67 15 20 H 0.30 15.60 8.31 -92.71 -0.77 14.83 15 21 H 0.41 12.89 8.64 -96.74 -0.84 12.06 15 22 H 0.08 2.51 7.71 -2.39 -0.02 2.49 15 23 H 0.10 2.35 8.10 -2.39 -0.02 2.33 15 24 H 0.19 3.16 8.06 -2.91 -0.02 3.14 15 25 H 0.23 2.90 8.06 -2.91 -0.02 2.88 15 26 H 0.18 3.86 8.06 -2.91 -0.02 3.84 15 Total: -1.00 -74.70 257.39 -1.80 -76.51 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.38 Total: 20.48 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 5.65 Total: -30.90 kcal Atomic # 7 Polarization: -116.16 SS G_CDS: -5.04 Total: -121.20 kcal Atomic # 8 Polarization: -119.09 SS G_CDS: -4.54 Total: -123.63 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.47 kcal Atomic # 16 Polarization: 137.54 SS G_CDS: -0.28 Total: 137.26 kcal Total: -74.70 -1.80 -76.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988010.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.204 kcal (2) G-P(sol) polarization free energy of solvation -74.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds