Wall clock time and date at job start Sun Mar 29 2020 22:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36936 * 120.00347 * 2 1 4 4 H 1.08001 * 120.00627 * 201.31433 * 3 2 1 5 5 C 1.38818 * 119.99441 * 21.32321 * 3 2 1 6 6 N 1.31608 * 120.00267 * 15.17162 * 5 3 2 7 7 Si 1.86806 * 119.99584 * 195.17275 * 5 3 2 8 8 H 1.48500 * 109.47485 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.47002 * 120.00027 * 7 5 3 10 10 H 1.48497 * 109.47360 * 239.99764 * 7 5 3 11 11 C 1.46505 * 119.99858 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.46879 * 269.99819 * 11 2 1 13 13 C 1.52998 * 109.47047 * 299.99803 * 12 11 2 14 14 C 1.53003 * 109.47057 * 180.02562 * 12 11 2 15 15 N 1.46896 * 109.46936 * 60.00063 * 12 11 2 16 16 C 1.47012 * 110.99937 * 56.31813 * 15 12 11 17 17 C 1.53097 * 109.25800 * 182.34494 * 16 15 12 18 18 O 1.43019 * 109.29631 * 303.22156 * 17 16 15 19 19 C 1.43019 * 113.73665 * 58.64539 * 18 17 16 20 20 C 1.47021 * 110.99574 * 179.97438 * 15 12 11 21 21 H 1.09001 * 109.47008 * 271.09751 * 1 2 3 22 22 H 1.09003 * 109.47269 * 31.09909 * 1 2 3 23 23 H 1.08994 * 109.47427 * 151.09419 * 1 2 3 24 24 H 0.97004 * 120.00304 * 179.97438 * 6 5 3 25 25 H 1.09001 * 109.46875 * 150.00314 * 11 2 1 26 26 H 1.08992 * 109.47151 * 30.00132 * 11 2 1 27 27 H 1.09003 * 109.47011 * 179.97438 * 13 12 11 28 28 H 1.09001 * 109.47849 * 300.00204 * 13 12 11 29 29 H 1.09003 * 109.47033 * 60.00096 * 13 12 11 30 30 H 1.09002 * 109.46891 * 300.00213 * 14 12 11 31 31 H 1.09005 * 109.47054 * 59.99595 * 14 12 11 32 32 H 1.08995 * 109.47095 * 179.97438 * 14 12 11 33 33 H 1.09006 * 109.46873 * 62.43803 * 16 15 12 34 34 H 1.08996 * 109.54929 * 302.30426 * 16 15 12 35 35 H 1.08997 * 109.51109 * 183.25914 * 17 16 15 36 36 H 1.09004 * 109.50262 * 63.17861 * 17 16 15 37 37 H 1.08997 * 109.50764 * 61.26620 * 19 18 17 38 38 H 1.08995 * 109.50586 * 181.35388 * 19 18 17 39 39 H 1.08995 * 109.50830 * 57.67440 * 20 15 12 40 40 H 1.08999 * 109.50700 * 297.53987 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1743 1.2179 -0.3400 5 6 1.5268 2.3469 0.4372 6 7 0.4055 2.2742 1.1223 7 14 2.2804 4.0125 0.0530 8 1 3.5312 3.8225 -0.7247 9 1 1.3204 4.8182 -0.7436 10 1 2.5883 4.7209 1.3212 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7110 1.4418 13 6 3.2794 -0.6451 2.1634 14 6 3.2180 -3.0358 1.4412 15 7 1.1689 -1.8869 2.1342 16 6 0.3106 -2.8418 1.4181 17 6 -1.0353 -2.9506 2.1397 18 8 -0.8129 -3.3350 3.4992 19 6 0.0182 -2.4259 4.2259 20 6 1.3752 -2.3133 3.5260 21 1 -0.3633 0.0197 1.0275 22 1 -0.3634 0.8800 -0.5308 23 1 -0.3634 -0.8996 -0.4967 24 1 -0.0296 3.0855 1.4281 25 1 3.1499 -1.1382 -0.5143 26 1 1.6084 -2.0281 -0.5147 27 1 3.4607 -0.9600 3.1911 28 1 4.2318 -0.5145 1.6497 29 1 2.7344 0.2989 2.1638 30 1 2.6292 -3.7954 0.9269 31 1 4.1704 -2.9048 0.9275 32 1 3.4000 -3.3506 2.4687 33 1 0.7927 -3.8193 1.3978 34 1 0.1495 -2.4936 0.3979 35 1 -1.6535 -3.7003 1.6460 36 1 -1.5418 -1.9858 2.1124 37 1 -0.4570 -1.4455 4.2594 38 1 0.1613 -2.7958 5.2412 39 1 1.9917 -1.5788 4.0441 40 1 1.8737 -3.2825 3.5396 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207304249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:29 Heat of formation + Delta-G solvation = -3.405016 kcal Electronic energy + Delta-G solvation = -19716.419519 eV Core-core repulsion = 16953.739130 eV Total energy + Delta-G solvation = -2762.680389 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.63446 -37.08862 -34.60728 -31.75644 -31.14753 -30.30806 -26.76925 -26.12368 -25.84745 -25.48192 -23.28480 -21.22577 -20.37962 -18.20927 -16.71675 -15.98408 -15.75598 -14.68733 -14.66309 -14.52608 -14.29179 -13.93907 -13.41247 -13.39008 -13.00280 -12.16644 -12.03835 -11.80884 -11.51960 -11.31586 -11.16285 -10.94513 -10.83797 -10.76626 -10.51995 -10.30885 -10.23307 -10.08599 -9.86864 -9.66710 -9.60873 -9.24287 -8.36493 -7.56395 -6.55997 -5.59718 -3.00259 3.42525 3.50938 3.51757 4.15193 4.36990 4.60420 5.28502 5.37690 5.38981 5.50982 5.52264 5.59302 5.64575 5.70175 5.76360 5.92023 5.98149 6.04503 6.09182 6.18370 6.22101 6.27648 6.29305 6.45878 6.62894 6.67254 6.69713 6.81683 6.95476 7.43169 7.50918 7.55638 7.71664 7.84981 7.89876 8.02803 8.51890 9.37245 10.01998 10.52117 11.44673 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028179 B = 0.008505 C = 0.007864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.408320 B = 3291.246822 C = 3559.843512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.586 5.586 3 C -0.242 4.242 4 H 0.064 0.936 5 C 0.002 3.998 6 N -0.898 5.898 7 Si 0.893 3.107 8 H -0.281 1.281 9 H -0.292 1.292 10 H -0.293 1.293 11 C 0.162 3.838 12 C 0.087 3.913 13 C -0.128 4.128 14 C -0.180 4.180 15 N -0.493 5.493 16 C 0.015 3.985 17 C 0.065 3.935 18 O -0.394 6.394 19 C 0.065 3.935 20 C 0.017 3.983 21 H 0.037 0.963 22 H 0.038 0.962 23 H -0.014 1.014 24 H 0.248 0.752 25 H 0.045 0.955 26 H 0.035 0.965 27 H 0.028 0.972 28 H 0.043 0.957 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.030 0.970 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.911 -10.121 2.610 10.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.307 5.307 3 C -0.372 4.372 4 H 0.082 0.918 5 C -0.196 4.196 6 N -0.543 5.543 7 Si 0.724 3.276 8 H -0.206 1.206 9 H -0.219 1.219 10 H -0.220 1.220 11 C 0.034 3.966 12 C -0.006 4.006 13 C -0.185 4.185 14 C -0.240 4.240 15 N -0.218 5.218 16 C -0.113 4.113 17 C -0.012 4.012 18 O -0.313 6.313 19 C -0.011 4.011 20 C -0.112 4.112 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.004 0.996 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.118 0.882 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.463 -9.665 2.734 10.055 hybrid contribution 1.014 0.389 -0.135 1.095 sum 1.477 -9.276 2.599 9.746 Atomic orbital electron populations 1.20756 0.82560 0.94710 0.99117 1.43760 1.01775 1.00004 1.85133 1.19124 0.97279 0.85074 1.35757 0.91783 1.24896 0.98126 0.97839 0.98783 1.70112 1.19424 1.26205 1.38558 0.86357 0.78433 0.85293 0.77492 1.20576 1.21911 1.22042 1.20920 0.95706 0.88810 0.91198 1.21963 0.87254 0.92723 0.98615 1.21784 0.98659 1.01508 0.96588 1.22519 1.00930 0.99582 1.00930 1.62289 1.14708 1.44570 1.00194 1.22864 0.94328 0.94223 0.99918 1.22650 0.96113 1.00681 0.81764 1.87881 1.69897 1.49751 1.23789 1.22627 0.90153 0.93958 0.94411 1.22784 0.97489 0.99046 0.91863 0.94500 0.94300 0.99554 0.94166 0.93635 0.94729 0.95336 0.93812 0.88185 0.93312 0.92578 0.93382 0.95216 0.88979 0.89443 0.91940 0.92122 0.89504 0.89798 0.94987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.18 7.50 59.84 0.45 4.63 16 2 N -0.59 -14.12 2.62 -181.12 -0.47 -14.60 16 3 C -0.24 -6.41 7.49 -15.06 -0.11 -6.52 16 4 H 0.06 1.69 7.86 -52.49 -0.41 1.28 16 5 C 0.00 0.05 5.03 -17.43 -0.09 -0.04 16 6 N -0.90 -25.66 10.76 55.49 0.60 -25.06 16 7 Si 0.89 21.73 29.58 -169.99 -5.03 16.70 16 8 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 11 C 0.16 3.27 4.46 -4.04 -0.02 3.25 16 12 C 0.09 1.59 0.47 -131.60 -0.06 1.52 16 13 C -0.13 -2.51 7.64 37.16 0.28 -2.23 16 14 C -0.18 -2.77 7.77 37.16 0.29 -2.48 16 15 N -0.49 -9.02 3.70 -218.66 -0.81 -9.83 16 16 C 0.01 0.25 4.40 -3.71 -0.02 0.23 16 17 C 0.06 1.01 7.01 37.21 0.26 1.27 16 18 O -0.39 -6.49 10.83 -35.23 -0.38 -6.88 16 19 C 0.07 1.01 7.01 37.21 0.26 1.27 16 20 C 0.02 0.27 4.87 -3.70 -0.02 0.25 16 21 H 0.04 0.96 7.41 -51.93 -0.38 0.58 16 22 H 0.04 1.03 7.01 -51.93 -0.36 0.67 16 23 H -0.01 -0.30 6.48 -51.93 -0.34 -0.64 16 24 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.05 0.91 8.03 -51.93 -0.42 0.50 16 26 H 0.03 0.66 6.08 -51.93 -0.32 0.34 16 27 H 0.03 0.50 6.35 -51.93 -0.33 0.17 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.10 2.43 6.29 -51.93 -0.33 2.10 16 30 H 0.05 0.72 6.54 -51.93 -0.34 0.38 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.71 6.46 -51.93 -0.34 0.38 16 33 H 0.03 0.48 6.52 -51.93 -0.34 0.14 16 34 H 0.09 1.60 4.08 -51.93 -0.21 1.39 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.08 1.39 6.19 -51.93 -0.32 1.07 16 40 H 0.03 0.51 6.44 -51.93 -0.33 0.17 16 LS Contribution 291.37 15.07 4.39 4.39 Total: -1.00 -28.53 291.37 -6.92 -35.45 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.44 Total: -1.35 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 1.23 Total: 1.17 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.69 Total: -49.49 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.38 Total: -6.88 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.53 -6.92 -35.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207304249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.042 kcal (2) G-P(sol) polarization free energy of solvation -28.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds