Wall clock time and date at job start Sun Mar 29 2020 22:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36936 * 120.00347 * 2 1 4 4 H 1.08001 * 120.00627 * 201.31433 * 3 2 1 5 5 C 1.38818 * 119.99441 * 21.32321 * 3 2 1 6 6 N 1.31608 * 120.00267 * 15.17162 * 5 3 2 7 7 Si 1.86806 * 119.99584 * 195.17275 * 5 3 2 8 8 H 1.48500 * 109.47485 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.47002 * 120.00027 * 7 5 3 10 10 H 1.48497 * 109.47360 * 239.99764 * 7 5 3 11 11 C 1.46505 * 119.99858 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.46879 * 269.99819 * 11 2 1 13 13 C 1.52998 * 109.47047 * 299.99803 * 12 11 2 14 14 C 1.53003 * 109.47057 * 180.02562 * 12 11 2 15 15 N 1.46896 * 109.46936 * 60.00063 * 12 11 2 16 16 C 1.47012 * 110.99937 * 56.31813 * 15 12 11 17 17 C 1.53097 * 109.25800 * 182.34494 * 16 15 12 18 18 O 1.43019 * 109.29631 * 303.22156 * 17 16 15 19 19 C 1.43019 * 113.73665 * 58.64539 * 18 17 16 20 20 C 1.47021 * 110.99574 * 179.97438 * 15 12 11 21 21 H 1.09001 * 109.47008 * 271.09751 * 1 2 3 22 22 H 1.09003 * 109.47269 * 31.09909 * 1 2 3 23 23 H 1.08994 * 109.47427 * 151.09419 * 1 2 3 24 24 H 0.97004 * 120.00304 * 179.97438 * 6 5 3 25 25 H 1.09001 * 109.46875 * 150.00314 * 11 2 1 26 26 H 1.08992 * 109.47151 * 30.00132 * 11 2 1 27 27 H 1.09003 * 109.47011 * 179.97438 * 13 12 11 28 28 H 1.09001 * 109.47849 * 300.00204 * 13 12 11 29 29 H 1.09003 * 109.47033 * 60.00096 * 13 12 11 30 30 H 1.09002 * 109.46891 * 300.00213 * 14 12 11 31 31 H 1.09005 * 109.47054 * 59.99595 * 14 12 11 32 32 H 1.08995 * 109.47095 * 179.97438 * 14 12 11 33 33 H 1.09006 * 109.46873 * 62.43803 * 16 15 12 34 34 H 1.08996 * 109.54929 * 302.30426 * 16 15 12 35 35 H 1.08997 * 109.51109 * 183.25914 * 17 16 15 36 36 H 1.09004 * 109.50262 * 63.17861 * 17 16 15 37 37 H 1.08997 * 109.50764 * 61.26620 * 19 18 17 38 38 H 1.08995 * 109.50586 * 181.35388 * 19 18 17 39 39 H 1.08995 * 109.50830 * 57.67440 * 20 15 12 40 40 H 1.08999 * 109.50700 * 297.53987 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1743 1.2179 -0.3400 5 6 1.5268 2.3469 0.4372 6 7 0.4055 2.2742 1.1223 7 14 2.2804 4.0125 0.0530 8 1 3.5312 3.8225 -0.7247 9 1 1.3204 4.8182 -0.7436 10 1 2.5883 4.7209 1.3212 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7110 1.4418 13 6 3.2794 -0.6451 2.1634 14 6 3.2180 -3.0358 1.4412 15 7 1.1689 -1.8869 2.1342 16 6 0.3106 -2.8418 1.4181 17 6 -1.0353 -2.9506 2.1397 18 8 -0.8129 -3.3350 3.4992 19 6 0.0182 -2.4259 4.2259 20 6 1.3752 -2.3133 3.5260 21 1 -0.3633 0.0197 1.0275 22 1 -0.3634 0.8800 -0.5308 23 1 -0.3634 -0.8996 -0.4967 24 1 -0.0296 3.0855 1.4281 25 1 3.1499 -1.1382 -0.5143 26 1 1.6084 -2.0281 -0.5147 27 1 3.4607 -0.9600 3.1911 28 1 4.2318 -0.5145 1.6497 29 1 2.7344 0.2989 2.1638 30 1 2.6292 -3.7954 0.9269 31 1 4.1704 -2.9048 0.9275 32 1 3.4000 -3.3506 2.4687 33 1 0.7927 -3.8193 1.3978 34 1 0.1495 -2.4936 0.3979 35 1 -1.6535 -3.7003 1.6460 36 1 -1.5418 -1.9858 2.1124 37 1 -0.4570 -1.4455 4.2594 38 1 0.1613 -2.7958 5.2412 39 1 1.9917 -1.5788 4.0441 40 1 1.8737 -3.2825 3.5396 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207304249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:29 Heat of formation + Delta-G solvation = -22.145141 kcal Electronic energy + Delta-G solvation = -19717.232152 eV Core-core repulsion = 16953.739130 eV Total energy + Delta-G solvation = -2763.493022 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.99875 -38.53354 -36.39401 -33.37265 -32.66358 -31.87639 -28.26406 -27.71430 -27.51775 -27.16651 -24.68055 -22.99862 -21.78884 -19.62689 -18.64353 -17.51079 -17.04543 -16.53997 -15.96770 -15.93995 -15.65497 -15.54201 -15.08438 -14.95844 -14.59311 -13.80094 -13.50973 -13.39798 -12.89364 -12.84656 -12.75722 -12.60801 -12.55263 -12.44335 -12.12200 -12.03927 -11.93305 -11.77974 -11.54841 -11.28949 -11.21094 -10.56020 -10.42820 -8.92793 -8.52206 -7.67210 -5.07919 1.46949 1.50341 1.58011 2.59172 2.89741 3.08628 3.44336 3.85636 4.01407 4.10485 4.12786 4.25839 4.34332 4.36779 4.40970 4.52479 4.66059 4.73829 4.77217 4.82542 4.86805 4.90144 4.97844 5.02662 5.07977 5.15665 5.18462 5.23541 5.37277 5.51944 5.77095 5.85151 6.00372 6.17711 6.39423 6.42835 6.49688 7.31250 8.05771 8.49890 9.35745 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028179 B = 0.008505 C = 0.007864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.408320 B = 3291.246822 C = 3559.843512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.195 3.805 2 N -0.597 5.597 3 C -0.234 4.234 4 H 0.064 0.936 5 C -0.050 4.050 6 N -0.927 5.927 7 Si 0.949 3.051 8 H -0.270 1.270 9 H -0.298 1.298 10 H -0.299 1.299 11 C 0.159 3.841 12 C 0.090 3.910 13 C -0.119 4.119 14 C -0.169 4.169 15 N -0.521 5.521 16 C 0.021 3.979 17 C 0.066 3.934 18 O -0.399 6.399 19 C 0.067 3.933 20 C 0.021 3.979 21 H 0.012 0.988 22 H 0.005 0.995 23 H 0.014 0.986 24 H 0.240 0.760 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.041 0.959 37 H 0.039 0.961 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.880 -12.060 2.541 12.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.318 5.318 3 C -0.365 4.365 4 H 0.082 0.918 5 C -0.245 4.245 6 N -0.575 5.575 7 Si 0.779 3.221 8 H -0.194 1.194 9 H -0.226 1.226 10 H -0.227 1.227 11 C 0.032 3.968 12 C -0.002 4.002 13 C -0.176 4.176 14 C -0.228 4.228 15 N -0.246 5.246 16 C -0.107 4.107 17 C -0.010 4.010 18 O -0.318 6.318 19 C -0.010 4.010 20 C -0.107 4.107 21 H 0.030 0.970 22 H 0.024 0.976 23 H 0.033 0.967 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.134 0.866 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.134 0.866 39 H 0.095 0.905 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.461 -11.634 2.653 12.022 hybrid contribution 0.733 0.929 -0.122 1.189 sum 2.194 -10.705 2.531 11.217 Atomic orbital electron populations 1.20397 0.82837 0.94357 0.97388 1.43894 1.01835 1.00926 1.85167 1.19317 0.97097 0.86070 1.33983 0.91813 1.25479 0.98887 1.00564 0.99547 1.70266 1.20821 1.26142 1.40257 0.85470 0.77899 0.81891 0.76806 1.19424 1.22567 1.22690 1.21076 0.95529 0.87402 0.92816 1.21742 0.87752 0.93921 0.96738 1.21633 0.98309 0.99639 0.98042 1.22363 1.00979 0.97596 1.01867 1.62215 1.14997 1.46097 1.01318 1.22805 0.94470 0.94272 0.99160 1.22703 0.95957 1.00614 0.81772 1.87880 1.70029 1.49800 1.24064 1.22690 0.89403 0.93140 0.95750 1.22757 0.97910 0.99307 0.90728 0.96954 0.97599 0.96743 0.95053 0.93453 0.93099 0.93727 0.93374 0.93100 0.92298 0.91552 0.92461 0.93832 0.90026 0.86610 0.94100 0.94266 0.86572 0.90529 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 9.52 7.50 127.77 0.96 10.47 16 2 N -0.60 -28.67 2.62 -726.94 -1.91 -30.58 16 3 C -0.23 -12.42 7.49 84.03 0.63 -11.79 16 4 H 0.06 3.34 7.86 -2.91 -0.02 3.32 16 5 C -0.05 -2.76 5.03 84.87 0.43 -2.33 16 6 N -0.93 -54.64 10.76 21.65 0.23 -54.40 16 7 Si 0.95 45.43 29.58 68.60 2.03 47.46 16 8 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 9 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 10 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 11 C 0.16 6.14 4.46 86.38 0.39 6.52 16 12 C 0.09 3.13 0.47 3.53 0.00 3.13 16 13 C -0.12 -4.54 7.64 71.98 0.55 -3.99 16 14 C -0.17 -4.59 7.77 71.98 0.56 -4.03 16 15 N -0.52 -18.33 3.70 -845.69 -3.13 -21.46 16 16 C 0.02 0.64 4.40 86.31 0.38 1.02 16 17 C 0.07 1.96 7.01 72.01 0.50 2.47 16 18 O -0.40 -12.30 10.83 -148.98 -1.61 -13.92 16 19 C 0.07 1.97 7.01 72.02 0.50 2.47 16 20 C 0.02 0.65 4.87 86.31 0.42 1.07 16 21 H 0.01 0.66 7.41 -2.39 -0.02 0.64 16 22 H 0.01 0.29 7.01 -2.39 -0.02 0.27 16 23 H 0.01 0.60 6.48 -2.39 -0.02 0.59 16 24 H 0.24 13.98 8.31 -92.71 -0.77 13.21 16 25 H 0.05 1.81 8.03 -2.39 -0.02 1.79 16 26 H 0.05 1.80 6.08 -2.39 -0.01 1.79 16 27 H 0.04 1.52 6.35 -2.39 -0.02 1.50 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 2.48 6.29 -2.39 -0.02 2.46 16 30 H 0.06 1.50 6.54 -2.39 -0.02 1.48 16 31 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.06 1.47 6.46 -2.39 -0.02 1.46 16 33 H 0.04 1.24 6.52 -2.38 -0.02 1.22 16 34 H 0.08 2.67 4.08 -2.39 -0.01 2.66 16 35 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.08 2.44 6.19 -2.39 -0.01 2.43 16 40 H 0.05 1.29 6.44 -2.39 -0.02 1.27 16 Total: -1.00 -61.42 291.37 1.94 -59.48 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 1.01 Total: 8.39 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 5.32 Total: 5.02 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -4.80 Total: -106.43 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -1.61 Total: -13.92 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -61.42 1.94 -59.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207304249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.336 kcal (2) G-P(sol) polarization free energy of solvation -61.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds