Wall clock time and date at job start Sun Mar 29 2020 22:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46838 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47020 * 179.97438 * 12 11 10 14 14 O 1.42892 * 109.47319 * 179.97438 * 13 12 11 15 15 C 1.42906 * 114.00440 * 180.02562 * 14 13 12 16 16 H 1.09004 * 109.51438 * 29.99999 * 15 14 13 17 17 C 1.53174 * 109.52430 * 150.11961 * 15 14 13 18 18 C 1.53181 * 109.03530 * 176.88780 * 17 15 14 19 19 C 1.53096 * 109.16159 * 303.02359 * 18 17 15 20 20 O 1.42903 * 109.41770 * 57.61029 * 19 18 17 21 21 C 1.42918 * 114.14979 * 298.87381 * 20 19 18 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 26 26 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 27 27 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 28 28 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 29 29 H 1.08998 * 109.46943 * 299.99126 * 12 11 10 30 30 H 1.09002 * 109.47396 * 60.00115 * 12 11 10 31 31 H 1.09004 * 109.47038 * 299.99988 * 13 12 11 32 32 H 1.09000 * 109.47414 * 59.99572 * 13 12 11 33 33 H 1.08993 * 109.54749 * 296.75892 * 17 15 14 34 34 H 1.09000 * 109.54213 * 57.02334 * 17 15 14 35 35 H 1.08994 * 109.51878 * 62.93013 * 18 17 15 36 36 H 1.09005 * 109.52282 * 183.11867 * 18 17 15 37 37 H 1.09003 * 109.47785 * 177.59015 * 19 18 17 38 38 H 1.09002 * 109.47754 * 297.61274 * 19 18 17 39 39 H 1.08994 * 109.42613 * 301.11067 * 21 20 19 40 40 H 1.09000 * 109.53260 * 181.07368 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 6 2.4743 -6.1500 -0.0215 13 6 1.7092 -7.4750 -0.0275 14 8 2.6377 -8.5612 -0.0322 15 6 2.0231 -9.8513 -0.0386 16 1 1.0635 -9.7950 -0.5525 17 6 2.9334 -10.8484 -0.7622 18 6 2.3012 -12.2420 -0.6948 19 6 2.0741 -12.6204 0.7712 20 8 1.2454 -11.6362 1.3930 21 6 1.8054 -10.3213 1.4019 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.8718 -3.6005 -0.9002 26 1 2.8717 -3.6084 0.8798 27 1 0.8531 -5.0490 0.8724 28 1 0.8537 -5.0406 -0.9075 29 1 3.1015 -6.0883 -0.9108 30 1 3.1002 -6.0964 0.8692 31 1 1.0821 -7.5365 0.8620 32 1 1.0829 -7.5290 -0.9180 33 1 3.0464 -10.5493 -1.8042 34 1 3.9103 -10.8674 -0.2790 35 1 1.3468 -12.2348 -1.2212 36 1 2.9689 -12.9678 -1.1591 37 1 1.5852 -13.5932 0.8240 38 1 3.0331 -12.6671 1.2873 39 1 2.7602 -10.3375 1.9273 40 1 1.1233 -9.6381 1.9081 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224370513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:16 Heat of formation + Delta-G solvation = -133.524171 kcal Electronic energy + Delta-G solvation = -16993.022701 eV Core-core repulsion = 14192.407171 eV Total energy + Delta-G solvation = -2800.615530 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.167 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.88826 -37.70828 -35.30690 -33.58736 -32.78167 -30.91244 -29.74827 -26.41782 -25.39406 -23.78241 -23.01888 -21.21071 -20.45114 -20.01926 -17.15478 -16.76221 -16.24243 -16.05236 -15.72797 -15.17416 -14.88384 -14.44725 -13.96942 -13.68594 -13.26337 -13.01128 -12.59335 -12.47304 -12.08576 -11.72809 -11.58879 -11.49376 -11.19958 -11.10472 -10.94441 -10.67586 -10.49863 -10.44179 -10.36654 -10.14559 -9.61881 -9.36956 -9.23649 -8.98942 -8.31559 -5.96813 -3.98833 3.25463 3.33837 3.39802 3.43617 3.75105 4.41958 4.47809 4.48687 4.54498 4.65835 4.83409 5.01973 5.11885 5.20093 5.23676 5.35021 5.38217 5.38820 5.49344 5.52735 5.58229 5.70214 5.73085 5.80569 5.86445 6.09022 6.29060 6.42173 6.51709 6.76134 6.83447 6.97263 7.17444 7.20187 7.72193 7.87821 8.04307 8.47524 9.08728 9.64985 11.14633 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.077319 B = 0.002788 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.049502 B =10040.862734 C =10170.072271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.116 4.116 12 C -0.116 4.116 13 C 0.060 3.940 14 O -0.379 6.379 15 C 0.057 3.943 16 H 0.068 0.932 17 C -0.121 4.121 18 C -0.153 4.153 19 C 0.056 3.944 20 O -0.379 6.379 21 C 0.040 3.960 22 H 0.260 0.740 23 H 0.015 0.985 24 H 0.015 0.985 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.974 -24.764 -0.155 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.154 4.154 13 C -0.016 4.016 14 O -0.298 6.298 15 C -0.002 4.002 16 H 0.086 0.914 17 C -0.158 4.158 18 C -0.191 4.191 19 C -0.021 4.021 20 O -0.298 6.298 21 C -0.037 4.037 22 H 0.069 0.931 23 H 0.033 0.967 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.843 -24.656 -0.070 24.954 hybrid contribution 0.380 1.035 -0.170 1.115 sum 4.223 -23.622 -0.240 23.998 Atomic orbital electron populations 1.69971 1.06062 1.26517 1.51108 1.25042 0.94856 0.99263 0.95432 0.86599 0.79856 0.83504 0.78075 1.20690 1.21242 1.19887 1.21300 0.93053 0.91204 1.50239 0.92730 1.19112 0.94077 0.91459 0.97111 1.21611 0.99045 0.93745 1.00299 1.21593 0.97733 0.94436 1.01617 1.21602 0.99050 0.91747 1.02984 1.22743 0.92064 0.86717 1.00096 1.87921 1.33831 1.13082 1.94990 1.22678 0.96936 0.84384 0.96193 0.91392 1.21669 0.99243 0.93340 1.01575 1.22212 1.02083 0.96905 0.97923 1.22644 0.95332 0.92062 0.92046 1.87956 1.45440 1.17237 1.79152 1.23094 0.99821 0.84200 0.96625 0.93057 0.96683 0.96703 0.93427 0.93397 0.92392 0.92408 0.91442 0.91432 0.93332 0.93272 0.90665 0.90862 0.90827 0.90235 0.88667 0.92947 0.92223 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.30 5.15 -26.74 -0.14 -2.43 16 11 C -0.12 -1.97 5.21 -26.73 -0.14 -2.11 16 12 C -0.12 -1.68 5.58 -26.73 -0.15 -1.83 16 13 C 0.06 0.76 5.75 37.16 0.21 0.97 16 14 O -0.38 -4.84 9.99 -35.23 -0.35 -5.19 16 15 C 0.06 0.59 2.81 -26.60 -0.07 0.52 16 16 H 0.07 0.70 7.79 -51.93 -0.40 0.30 16 17 C -0.12 -1.05 5.68 -26.55 -0.15 -1.20 16 18 C -0.15 -1.05 6.14 -26.59 -0.16 -1.22 16 19 C 0.06 0.42 6.84 37.21 0.25 0.67 16 20 O -0.38 -3.96 10.76 -35.23 -0.38 -4.34 16 21 C 0.04 0.40 6.47 37.20 0.24 0.64 16 22 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.58 7.95 -51.93 -0.41 0.16 16 32 H 0.05 0.59 8.09 -51.93 -0.42 0.17 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.95 7.95 -51.93 -0.41 0.54 16 LS Contribution 324.03 15.07 4.88 4.88 Total: -1.00 -31.28 324.03 -8.32 -39.60 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -7.53 Total: -5.71 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -0.66 Total: -19.50 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.74 Total: -26.73 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.73 Total: -9.53 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.28 -8.32 -39.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224370513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.927 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds