Wall clock time and date at job start Sun Mar 29 2020 22:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46838 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47020 * 179.97438 * 12 11 10 14 14 O 1.42892 * 109.47319 * 179.97438 * 13 12 11 15 15 C 1.42906 * 114.00440 * 180.02562 * 14 13 12 16 16 H 1.09004 * 109.51438 * 29.99999 * 15 14 13 17 17 C 1.53174 * 109.52430 * 150.11961 * 15 14 13 18 18 C 1.53181 * 109.03530 * 176.88780 * 17 15 14 19 19 C 1.53096 * 109.16159 * 303.02359 * 18 17 15 20 20 O 1.42903 * 109.41770 * 57.61029 * 19 18 17 21 21 C 1.42918 * 114.14979 * 298.87381 * 20 19 18 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 26 26 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 27 27 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 28 28 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 29 29 H 1.08998 * 109.46943 * 299.99126 * 12 11 10 30 30 H 1.09002 * 109.47396 * 60.00115 * 12 11 10 31 31 H 1.09004 * 109.47038 * 299.99988 * 13 12 11 32 32 H 1.09000 * 109.47414 * 59.99572 * 13 12 11 33 33 H 1.08993 * 109.54749 * 296.75892 * 17 15 14 34 34 H 1.09000 * 109.54213 * 57.02334 * 17 15 14 35 35 H 1.08994 * 109.51878 * 62.93013 * 18 17 15 36 36 H 1.09005 * 109.52282 * 183.11867 * 18 17 15 37 37 H 1.09003 * 109.47785 * 177.59015 * 19 18 17 38 38 H 1.09002 * 109.47754 * 297.61274 * 19 18 17 39 39 H 1.08994 * 109.42613 * 301.11067 * 21 20 19 40 40 H 1.09000 * 109.53260 * 181.07368 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 6 2.4743 -6.1500 -0.0215 13 6 1.7092 -7.4750 -0.0275 14 8 2.6377 -8.5612 -0.0322 15 6 2.0231 -9.8513 -0.0386 16 1 1.0635 -9.7950 -0.5525 17 6 2.9334 -10.8484 -0.7622 18 6 2.3012 -12.2420 -0.6948 19 6 2.0741 -12.6204 0.7712 20 8 1.2454 -11.6362 1.3930 21 6 1.8054 -10.3213 1.4019 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.8718 -3.6005 -0.9002 26 1 2.8717 -3.6084 0.8798 27 1 0.8531 -5.0490 0.8724 28 1 0.8537 -5.0406 -0.9075 29 1 3.1015 -6.0883 -0.9108 30 1 3.1002 -6.0964 0.8692 31 1 1.0821 -7.5365 0.8620 32 1 1.0829 -7.5290 -0.9180 33 1 3.0464 -10.5493 -1.8042 34 1 3.9103 -10.8674 -0.2790 35 1 1.3468 -12.2348 -1.2212 36 1 2.9689 -12.9678 -1.1591 37 1 1.5852 -13.5932 0.8240 38 1 3.0331 -12.6671 1.2873 39 1 2.7602 -10.3375 1.9273 40 1 1.1233 -9.6381 1.9081 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224370513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:15 Heat of formation + Delta-G solvation = -152.007886 kcal Electronic energy + Delta-G solvation = -16993.824215 eV Core-core repulsion = 14192.407171 eV Total energy + Delta-G solvation = -2801.417044 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.167 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.64303 -38.62610 -36.86185 -34.93244 -34.13325 -32.25907 -30.89273 -28.11673 -26.09522 -25.25969 -23.98019 -22.50222 -21.77763 -21.20667 -18.46412 -17.92886 -17.56205 -16.95255 -16.70935 -16.53039 -16.02402 -15.79339 -15.14719 -14.61536 -14.50271 -14.09633 -13.85057 -13.76949 -13.50285 -13.19921 -12.92663 -12.73399 -12.48323 -12.33515 -12.15601 -12.01358 -11.85951 -11.84306 -11.40824 -11.33792 -11.30819 -11.00759 -10.94671 -10.55583 -10.18327 -8.20509 -6.31778 1.39360 1.41024 1.52300 2.39484 2.43936 3.01704 3.12251 3.70148 3.76376 3.89890 3.98093 4.02078 4.13379 4.16852 4.31653 4.38840 4.40731 4.49162 4.61090 4.66962 4.72719 4.78571 4.86905 4.90423 4.95929 4.99945 5.07158 5.11993 5.23721 5.30141 5.30309 5.39007 5.55326 5.78250 5.86944 6.01823 6.25996 6.31908 6.85791 7.37497 8.91416 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.077319 B = 0.002788 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.049502 B =10040.862734 C =10170.072271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.021 3.979 10 C -0.099 4.099 11 C -0.108 4.108 12 C -0.107 4.107 13 C 0.063 3.937 14 O -0.392 6.392 15 C 0.053 3.947 16 H 0.067 0.933 17 C -0.121 4.121 18 C -0.147 4.147 19 C 0.048 3.952 20 O -0.397 6.397 21 C 0.042 3.958 22 H 0.264 0.736 23 H -0.009 1.009 24 H -0.009 1.009 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.091 -25.583 -0.344 26.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.016 4.016 10 C -0.137 4.137 11 C -0.145 4.145 12 C -0.145 4.145 13 C -0.013 4.013 14 O -0.312 6.312 15 C -0.006 4.006 16 H 0.086 0.914 17 C -0.158 4.158 18 C -0.185 4.185 19 C -0.028 4.028 20 O -0.317 6.317 21 C -0.036 4.036 22 H 0.073 0.927 23 H 0.009 0.991 24 H 0.009 0.991 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.970 -25.497 -0.262 25.978 hybrid contribution 0.008 1.240 -0.111 1.245 sum 4.978 -24.257 -0.372 24.766 Atomic orbital electron populations 1.70102 1.07829 1.27784 1.51789 1.26024 0.95821 1.03482 0.94741 0.85429 0.78650 0.78317 0.78552 1.19683 1.20628 1.18752 1.21759 0.93568 0.92601 1.50427 0.92280 1.19049 0.94557 0.93275 0.94733 1.21444 0.98010 0.93744 1.00502 1.21442 0.97899 0.93417 1.01773 1.21428 0.98337 0.91684 1.03030 1.22625 0.91802 0.86022 1.00832 1.87886 1.34305 1.13878 1.95133 1.22833 0.97317 0.83704 0.96697 0.91448 1.21703 0.98969 0.93903 1.01249 1.22194 1.02375 0.96200 0.97714 1.22888 0.95621 0.92072 0.92238 1.87931 1.46488 1.17572 1.79680 1.23036 0.99733 0.84409 0.96382 0.92749 0.99062 0.99085 0.93159 0.93140 0.92274 0.92315 0.91426 0.91370 0.92578 0.92638 0.90639 0.90944 0.90945 0.88052 0.86904 0.92246 0.92204 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 3 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -31.94 9.11 25.60 0.23 -31.71 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.10 -4.17 5.15 30.59 0.16 -4.01 16 11 C -0.11 -3.60 5.21 30.59 0.16 -3.44 16 12 C -0.11 -2.96 5.58 30.60 0.17 -2.79 16 13 C 0.06 1.53 5.75 71.98 0.41 1.94 16 14 O -0.39 -9.55 9.99 -148.98 -1.49 -11.04 16 15 C 0.05 1.04 2.81 30.68 0.09 1.12 16 16 H 0.07 1.33 7.79 -2.38 -0.02 1.31 16 17 C -0.12 -1.91 5.68 30.71 0.17 -1.73 16 18 C -0.15 -1.71 6.14 30.69 0.19 -1.52 16 19 C 0.05 0.62 6.84 72.01 0.49 1.11 16 20 O -0.40 -7.82 10.76 -148.98 -1.60 -9.43 16 21 C 0.04 0.80 6.47 72.01 0.47 1.27 16 22 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 23 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 24 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 25 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.26 7.95 -2.38 -0.02 1.24 16 32 H 0.06 1.26 8.09 -2.39 -0.02 1.24 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.09 1.79 7.95 -2.39 -0.02 1.77 16 Total: -1.00 -66.56 324.03 3.33 -63.23 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 0.96 Total: 6.14 kcal Atomic # 6 Polarization: -41.36 SS G_CDS: 3.15 Total: -38.21 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.28 Total: -57.72 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -3.09 Total: -20.46 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -66.56 3.33 -63.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224370513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.782 kcal (2) G-P(sol) polarization free energy of solvation -66.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds