Wall clock time and date at job start Sun Mar 29 2020 22:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46929 * 2 1 4 4 C 1.53001 * 109.47111 * 240.00424 * 2 1 3 5 5 C 1.52999 * 109.47269 * 65.65895 * 4 2 1 6 6 C 1.50699 * 109.47405 * 174.83252 * 5 4 2 7 7 H 1.07999 * 119.99554 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00210 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99849 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 120.00099 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46895 * 59.99233 * 10 8 6 12 12 H 1.48501 * 109.47084 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46891 * 299.99522 * 10 8 6 14 14 N 1.46896 * 109.46857 * 120.00343 * 2 1 3 15 15 C 1.48558 * 110.99834 * 181.19836 * 14 2 1 16 16 C 1.54381 * 104.59896 * 159.04053 * 15 14 2 17 17 H 1.08999 * 110.32294 * 95.04254 * 16 15 14 18 18 O 1.42892 * 110.32552 * 217.25327 * 16 15 14 19 19 C 1.54266 * 105.05718 * 336.14812 * 16 15 14 20 20 H 1.09002 * 110.40592 * 118.93694 * 19 16 15 21 21 C 1.53001 * 110.32221 * 241.10353 * 19 16 15 22 22 N 1.46903 * 109.46684 * 290.63715 * 21 19 16 23 23 C 1.48562 * 111.00166 * 296.61673 * 14 2 1 24 24 H 1.08999 * 109.47234 * 299.99578 * 1 2 3 25 25 H 1.09000 * 109.47227 * 59.99955 * 1 2 3 26 26 H 1.08998 * 109.47331 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47129 * 185.65673 * 4 2 1 28 28 H 1.09001 * 109.47107 * 305.66474 * 4 2 1 29 29 H 1.09002 * 109.47432 * 294.83340 * 5 4 2 30 30 H 1.09004 * 109.46814 * 54.83002 * 5 4 2 31 31 H 0.96999 * 119.99724 * 180.02562 * 9 8 6 32 32 H 1.08999 * 110.41236 * 277.82101 * 15 14 2 33 33 H 1.09004 * 110.41385 * 40.25759 * 15 14 2 34 34 H 0.96707 * 113.99972 * 295.63531 * 18 16 15 35 35 H 1.09001 * 109.46854 * 170.63706 * 21 19 16 36 36 H 1.08997 * 109.47176 * 50.63821 * 21 19 16 37 37 H 1.00900 * 110.99141 * 180.02562 * 22 21 19 38 38 H 1.00901 * 110.99973 * 303.95207 * 22 21 19 39 39 H 1.08990 * 110.41261 * 82.18469 * 23 14 2 40 40 H 1.09003 * 110.51076 * 319.78933 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6495 0.0776 -2.4944 6 6 2.2592 -0.5636 -3.7143 7 1 2.8650 -1.4518 -3.6117 8 6 2.0445 -0.0159 -4.9612 9 7 1.3071 1.0660 -5.0861 10 14 2.8008 -0.8103 -6.4733 11 1 2.3021 -2.2031 -6.6024 12 1 2.4216 -0.0351 -7.6818 13 1 4.2795 -0.8246 -6.3376 14 7 2.0196 -0.6926 1.1994 15 6 3.5044 -0.6873 1.2483 16 6 3.8456 -0.9315 2.7340 17 1 4.0260 -1.9917 2.9117 18 8 4.9882 -0.1621 3.1138 19 6 2.6001 -0.4618 3.5137 20 1 2.1685 -1.2904 4.0752 21 6 2.9656 0.6856 4.4575 22 7 3.8102 0.1745 5.5454 23 6 1.6112 0.0266 2.4335 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1253 -0.8097 -1.2001 28 1 1.5962 -1.7154 -1.3015 29 1 0.5641 0.0882 -2.5937 30 1 2.0157 1.0999 -2.3999 31 1 1.1557 1.4512 -5.9634 32 1 3.9080 -1.4883 0.6289 33 1 3.8921 0.2781 0.9229 34 1 5.8017 -0.4134 2.6552 35 1 2.0555 1.1159 4.8756 36 1 3.5091 1.4517 3.9047 37 1 4.0649 0.9139 6.1830 38 1 3.3537 -0.5818 6.0329 39 1 0.5895 -0.2368 2.7065 40 1 1.7012 1.1041 2.2951 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246578767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:12 Heat of formation + Delta-G solvation = -57.571933 kcal Electronic energy + Delta-G solvation = -18097.971450 eV Core-core repulsion = 15332.942207 eV Total energy + Delta-G solvation = -2765.029243 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.63251 -36.54926 -34.89239 -33.80185 -32.29173 -29.67109 -29.16909 -27.20678 -25.31569 -23.81245 -22.37053 -21.03963 -19.92154 -19.10659 -17.30436 -16.63245 -16.06296 -15.33192 -14.79404 -14.55119 -14.47620 -14.25510 -14.03111 -13.30803 -12.96486 -12.70062 -12.41247 -12.14356 -12.00230 -11.62782 -11.32569 -11.18335 -11.03760 -10.98076 -10.72156 -10.52635 -10.51701 -10.18830 -9.73033 -9.61251 -9.28147 -9.01370 -8.64137 -8.32142 -8.22068 -5.98002 -3.99983 3.34539 3.38686 3.41388 4.01173 4.32895 4.47231 4.51383 4.77102 4.84594 4.98294 5.28968 5.37608 5.42488 5.46676 5.55429 5.57102 5.69128 5.72394 5.80825 5.95319 6.03962 6.10498 6.22061 6.30646 6.42269 6.62585 6.73882 6.74921 7.03542 7.07445 7.21275 7.34805 7.42052 7.70337 7.80423 7.86147 8.02400 8.46016 9.06922 9.63774 11.13349 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.042011 B = 0.004514 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.335107 B = 6201.200900 C = 6600.172713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.071 3.929 3 H 0.038 0.962 4 C -0.101 4.101 5 C 0.023 3.977 6 C -0.519 4.519 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.502 5.502 15 C 0.000 4.000 16 C 0.114 3.886 17 H 0.060 0.940 18 O -0.541 6.541 19 C -0.085 4.085 20 H 0.080 0.920 21 C 0.084 3.916 22 N -0.834 5.834 23 C 0.037 3.963 24 H 0.041 0.959 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.019 0.981 30 H 0.012 0.988 31 H 0.260 0.740 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.368 0.632 35 H 0.017 0.983 36 H 0.078 0.922 37 H 0.336 0.664 38 H 0.331 0.669 39 H 0.080 0.920 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 -1.871 18.710 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.037 4.037 3 H 0.056 0.944 4 C -0.139 4.139 5 C -0.014 4.014 6 C -0.558 4.558 7 H 0.072 0.928 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.227 5.227 15 C -0.129 4.129 16 C 0.054 3.946 17 H 0.078 0.922 18 O -0.345 6.345 19 C -0.104 4.104 20 H 0.098 0.902 21 C -0.047 4.047 22 N -0.362 5.362 23 C -0.092 4.092 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.214 0.786 35 H 0.035 0.965 36 H 0.096 0.904 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.098 0.902 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.357 -2.171 18.348 18.626 hybrid contribution 0.251 0.496 -0.770 0.950 sum 2.608 -1.675 17.578 17.849 Atomic orbital electron populations 1.21826 0.94533 1.02112 1.01250 1.22005 0.95783 0.95627 0.90273 0.94423 1.21694 0.99390 0.99426 0.93362 1.19119 0.96913 0.94870 0.90543 1.21224 1.31226 1.11553 0.91774 0.92816 1.25017 0.95344 0.95015 0.99053 1.69957 1.38941 1.20985 1.23713 0.86669 0.79663 0.79412 0.82327 1.20232 1.21308 1.20283 1.65454 1.07087 1.48422 1.01737 1.23877 0.90141 1.01725 0.97150 1.22300 0.86365 0.94186 0.91764 0.92175 1.86689 1.18429 1.61583 1.67755 1.21986 0.94229 0.98354 0.95843 0.90200 1.21523 0.94005 0.96622 0.92516 1.58561 1.48237 1.13938 1.15474 1.23107 0.98878 0.96784 0.90420 0.94027 0.91158 0.92241 0.93433 0.92724 0.96235 0.96976 0.92999 0.89815 0.92895 0.78578 0.96455 0.90380 0.85227 0.85738 0.90190 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.89 37.16 0.33 -2.00 16 2 C 0.07 1.27 1.90 -67.71 -0.13 1.14 16 3 H 0.04 0.71 7.98 -51.93 -0.41 0.30 16 4 C -0.10 -2.14 4.62 -26.73 -0.12 -2.26 16 5 C 0.02 0.60 4.61 -27.88 -0.13 0.47 16 6 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 7 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 10 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 N -0.50 -7.75 5.20 -222.02 -1.15 -8.90 16 15 C 0.00 0.00 5.13 -2.18 -0.01 -0.02 16 16 C 0.11 1.38 4.33 -25.35 -0.11 1.27 16 17 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 18 O -0.54 -6.41 10.82 -35.23 -0.38 -6.79 16 19 C -0.08 -0.98 3.23 -89.23 -0.29 -1.26 16 20 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 21 C 0.08 0.90 5.50 -3.82 -0.02 0.88 16 22 N -0.83 -7.95 8.73 -10.37 -0.09 -8.04 16 23 C 0.04 0.48 5.03 -2.18 -0.01 0.47 16 24 H 0.04 0.60 7.03 -51.93 -0.37 0.23 16 25 H 0.07 1.28 6.70 -51.93 -0.35 0.93 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 1.00 6.69 -51.93 -0.35 0.65 16 28 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.02 0.53 6.84 -51.93 -0.36 0.17 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.08 1.22 7.54 -51.93 -0.39 0.83 16 33 H 0.05 0.82 7.89 -51.93 -0.41 0.41 16 34 H 0.37 3.18 9.12 45.56 0.42 3.60 16 35 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.08 0.98 7.48 -51.93 -0.39 0.59 16 37 H 0.34 2.70 9.08 -39.29 -0.36 2.35 16 38 H 0.33 2.70 8.99 -39.29 -0.35 2.35 16 39 H 0.08 0.98 7.69 -51.93 -0.40 0.58 16 40 H 0.04 0.60 7.64 -51.93 -0.40 0.20 16 LS Contribution 312.30 15.07 4.71 4.71 Total: -1.00 -31.28 312.30 -8.30 -39.58 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.19 Total: 4.00 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -0.90 Total: -14.98 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.51 Total: -43.36 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.38 Total: -6.79 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.28 -8.30 -39.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246578767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.996 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds