Wall clock time and date at job start Sun Mar 29 2020 22:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46929 * 2 1 4 4 C 1.53001 * 109.47111 * 240.00424 * 2 1 3 5 5 C 1.52999 * 109.47269 * 65.65895 * 4 2 1 6 6 C 1.50699 * 109.47405 * 174.83252 * 5 4 2 7 7 H 1.07999 * 119.99554 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00210 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99849 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 120.00099 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46895 * 59.99233 * 10 8 6 12 12 H 1.48501 * 109.47084 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46891 * 299.99522 * 10 8 6 14 14 N 1.46896 * 109.46857 * 120.00343 * 2 1 3 15 15 C 1.48558 * 110.99834 * 181.19836 * 14 2 1 16 16 C 1.54381 * 104.59896 * 159.04053 * 15 14 2 17 17 H 1.08999 * 110.32294 * 95.04254 * 16 15 14 18 18 O 1.42892 * 110.32552 * 217.25327 * 16 15 14 19 19 C 1.54266 * 105.05718 * 336.14812 * 16 15 14 20 20 H 1.09002 * 110.40592 * 118.93694 * 19 16 15 21 21 C 1.53001 * 110.32221 * 241.10353 * 19 16 15 22 22 N 1.46903 * 109.46684 * 290.63715 * 21 19 16 23 23 C 1.48562 * 111.00166 * 296.61673 * 14 2 1 24 24 H 1.08999 * 109.47234 * 299.99578 * 1 2 3 25 25 H 1.09000 * 109.47227 * 59.99955 * 1 2 3 26 26 H 1.08998 * 109.47331 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47129 * 185.65673 * 4 2 1 28 28 H 1.09001 * 109.47107 * 305.66474 * 4 2 1 29 29 H 1.09002 * 109.47432 * 294.83340 * 5 4 2 30 30 H 1.09004 * 109.46814 * 54.83002 * 5 4 2 31 31 H 0.96999 * 119.99724 * 180.02562 * 9 8 6 32 32 H 1.08999 * 110.41236 * 277.82101 * 15 14 2 33 33 H 1.09004 * 110.41385 * 40.25759 * 15 14 2 34 34 H 0.96707 * 113.99972 * 295.63531 * 18 16 15 35 35 H 1.09001 * 109.46854 * 170.63706 * 21 19 16 36 36 H 1.08997 * 109.47176 * 50.63821 * 21 19 16 37 37 H 1.00900 * 110.99141 * 180.02562 * 22 21 19 38 38 H 1.00901 * 110.99973 * 303.95207 * 22 21 19 39 39 H 1.08990 * 110.41261 * 82.18469 * 23 14 2 40 40 H 1.09003 * 110.51076 * 319.78933 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6495 0.0776 -2.4944 6 6 2.2592 -0.5636 -3.7143 7 1 2.8650 -1.4518 -3.6117 8 6 2.0445 -0.0159 -4.9612 9 7 1.3071 1.0660 -5.0861 10 14 2.8008 -0.8103 -6.4733 11 1 2.3021 -2.2031 -6.6024 12 1 2.4216 -0.0351 -7.6818 13 1 4.2795 -0.8246 -6.3376 14 7 2.0196 -0.6926 1.1994 15 6 3.5044 -0.6873 1.2483 16 6 3.8456 -0.9315 2.7340 17 1 4.0260 -1.9917 2.9117 18 8 4.9882 -0.1621 3.1138 19 6 2.6001 -0.4618 3.5137 20 1 2.1685 -1.2904 4.0752 21 6 2.9656 0.6856 4.4575 22 7 3.8102 0.1745 5.5454 23 6 1.6112 0.0266 2.4335 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1253 -0.8097 -1.2001 28 1 1.5962 -1.7154 -1.3015 29 1 0.5641 0.0882 -2.5937 30 1 2.0157 1.0999 -2.3999 31 1 1.1557 1.4512 -5.9634 32 1 3.9080 -1.4883 0.6289 33 1 3.8921 0.2781 0.9229 34 1 5.8017 -0.4134 2.6552 35 1 2.0555 1.1159 4.8756 36 1 3.5091 1.4517 3.9047 37 1 4.0649 0.9139 6.1830 38 1 3.3537 -0.5818 6.0329 39 1 0.5895 -0.2368 2.7065 40 1 1.7012 1.1041 2.2951 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246578767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:12 Heat of formation + Delta-G solvation = -82.959459 kcal Electronic energy + Delta-G solvation = -18099.072336 eV Core-core repulsion = 15332.942207 eV Total energy + Delta-G solvation = -2766.130129 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74568 -37.81267 -35.93066 -35.37553 -33.98961 -31.28727 -30.29303 -28.50397 -27.05761 -25.07159 -23.66901 -22.63769 -21.01381 -20.52705 -18.55920 -18.26217 -17.37944 -16.59215 -16.20024 -15.98322 -15.60120 -15.52734 -15.18817 -14.57743 -14.41783 -14.17083 -13.74519 -13.56000 -13.42924 -13.06611 -12.83976 -12.81917 -12.57982 -12.36310 -12.22661 -12.00516 -11.75398 -11.56129 -11.44978 -11.26652 -11.01834 -10.70409 -10.54060 -9.49599 -9.37043 -8.20528 -6.31647 1.39045 1.42228 1.50181 2.40223 2.87085 3.12380 3.43591 3.52375 3.76576 3.90146 4.04370 4.08230 4.24306 4.29347 4.45303 4.51078 4.57467 4.65009 4.71300 4.77873 4.79193 4.90951 4.95688 4.98230 5.04493 5.08420 5.17704 5.33935 5.36714 5.50102 5.73441 5.84356 5.90052 6.03353 6.26738 6.37159 6.72877 6.84818 7.01448 7.37395 8.91084 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.042011 B = 0.004514 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.335107 B = 6201.200900 C = 6600.172713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.080 3.920 3 H 0.022 0.978 4 C -0.086 4.086 5 C 0.030 3.970 6 C -0.545 4.545 7 H 0.057 0.943 8 C 0.001 3.999 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.266 1.266 12 H -0.282 1.282 13 H -0.267 1.267 14 N -0.504 5.504 15 C -0.002 4.002 16 C 0.122 3.878 17 H 0.070 0.930 18 O -0.550 6.550 19 C -0.081 4.081 20 H 0.095 0.905 21 C 0.091 3.909 22 N -0.840 5.840 23 C 0.036 3.964 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.000 1.000 30 H -0.016 1.016 31 H 0.264 0.736 32 H 0.078 0.922 33 H 0.036 0.964 34 H 0.382 0.618 35 H 0.029 0.971 36 H 0.056 0.944 37 H 0.344 0.656 38 H 0.341 0.659 39 H 0.094 0.906 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.029 -3.027 19.817 20.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.029 4.029 3 H 0.040 0.960 4 C -0.124 4.124 5 C -0.008 4.008 6 C -0.583 4.583 7 H 0.076 0.924 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.788 3.212 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.192 1.192 14 N -0.229 5.229 15 C -0.130 4.130 16 C 0.062 3.938 17 H 0.088 0.912 18 O -0.355 6.355 19 C -0.100 4.100 20 H 0.113 0.887 21 C -0.040 4.040 22 N -0.370 5.370 23 C -0.092 4.092 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.018 0.982 30 H 0.002 0.998 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.230 0.770 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.112 0.888 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.821 -3.336 19.479 19.963 hybrid contribution 0.129 0.886 -1.082 1.405 sum 2.950 -2.451 18.397 18.792 Atomic orbital electron populations 1.21748 0.93531 1.02392 1.01443 1.21754 0.96534 0.94399 0.90184 0.95987 1.21448 0.99257 0.98718 0.92993 1.18983 0.95365 0.93955 0.92468 1.21669 1.31619 1.11963 0.93073 0.92439 1.25969 0.95662 0.95484 1.02584 1.70091 1.40107 1.22390 1.24702 0.85517 0.79052 0.78673 0.77917 1.19116 1.20714 1.19230 1.65409 1.07778 1.48197 1.01543 1.23917 0.89461 1.00615 0.99044 1.22219 0.86869 0.94724 0.89965 0.91190 1.86667 1.19039 1.61852 1.67912 1.21991 0.93427 0.99084 0.95488 0.88707 1.21366 0.94347 0.95716 0.92579 1.58501 1.48174 1.14649 1.15674 1.23192 1.00150 0.96258 0.89591 0.91344 0.93436 0.91850 0.93607 0.92869 0.98162 0.99761 0.92757 0.90320 0.94585 0.77026 0.95256 0.92521 0.84265 0.84645 0.88786 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 8.89 71.98 0.64 -3.79 16 2 C 0.08 2.87 1.90 44.92 0.09 2.96 16 3 H 0.02 0.86 7.98 -2.39 -0.02 0.84 16 4 C -0.09 -3.72 4.62 30.59 0.14 -3.58 16 5 C 0.03 1.61 4.61 29.85 0.14 1.75 16 6 C -0.55 -31.80 9.11 25.60 0.23 -31.57 16 7 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 8 C 0.00 0.04 5.46 84.65 0.46 0.51 16 9 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 10 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 14 N -0.50 -15.08 5.20 -856.35 -4.45 -19.53 16 15 C 0.00 -0.05 5.13 86.45 0.44 0.40 16 16 C 0.12 2.75 4.33 31.49 0.14 2.89 16 17 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 18 O -0.55 -12.15 10.82 -148.98 -1.61 -13.76 16 19 C -0.08 -1.67 3.23 -9.89 -0.03 -1.70 16 20 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 21 C 0.09 1.77 5.50 86.30 0.47 2.24 16 22 N -0.84 -14.03 8.73 -186.71 -1.63 -15.66 16 23 C 0.04 0.88 5.03 86.45 0.43 1.32 16 24 H 0.07 1.87 7.03 -2.39 -0.02 1.86 16 25 H 0.05 1.77 6.70 -2.39 -0.02 1.76 16 26 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.05 1.96 6.69 -2.39 -0.02 1.94 16 28 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.00 0.00 6.84 -2.39 -0.02 -0.01 16 30 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 31 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.08 2.26 7.54 -2.39 -0.02 2.24 16 33 H 0.04 1.13 7.89 -2.38 -0.02 1.11 16 34 H 0.38 6.03 9.12 -74.05 -0.68 5.36 16 35 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.06 1.35 7.48 -2.39 -0.02 1.34 16 37 H 0.34 4.81 9.08 -89.69 -0.81 4.00 16 38 H 0.34 4.62 8.99 -89.69 -0.81 3.81 16 39 H 0.09 2.03 7.69 -2.39 -0.02 2.01 16 40 H 0.04 0.98 7.64 -2.39 -0.02 0.97 16 Total: -1.00 -67.00 312.30 -3.49 -70.49 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -1.26 Total: 17.44 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 3.16 Total: -28.59 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -5.80 Total: -92.44 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -1.61 Total: -13.76 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -67.00 -3.49 -70.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246578767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.473 kcal (2) G-P(sol) polarization free energy of solvation -67.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds