Wall clock time and date at job start Sun Mar 29 2020 22:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47332 * 2 1 4 4 C 1.52996 * 109.46825 * 120.00180 * 2 1 3 5 5 C 1.53001 * 109.47096 * 185.00077 * 4 2 1 6 6 C 1.50707 * 109.47128 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99688 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99911 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00026 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99825 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47152 * 59.99542 * 10 8 6 12 12 H 1.48504 * 109.46834 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47103 * 299.99316 * 10 8 6 14 14 N 1.46896 * 109.47228 * 239.99821 * 2 1 3 15 15 C 1.47447 * 111.00378 * 306.20282 * 14 2 1 16 16 C 1.54311 * 107.23580 * 123.25462 * 15 14 2 17 17 H 1.08999 * 110.70665 * 263.89858 * 16 15 14 18 18 O 1.42898 * 110.70397 * 140.66529 * 16 15 14 19 19 C 1.55141 * 103.02072 * 22.28459 * 16 15 14 20 20 H 1.09003 * 110.98822 * 82.43580 * 19 16 15 21 21 C 1.52997 * 110.99349 * 206.21589 * 19 16 15 22 22 N 1.46906 * 109.47114 * 293.55052 * 21 19 16 23 23 C 1.47851 * 110.99775 * 67.04257 * 14 2 1 24 24 H 1.09003 * 109.47221 * 306.16649 * 1 2 3 25 25 H 1.09008 * 109.46708 * 66.15815 * 1 2 3 26 26 H 1.08995 * 109.47488 * 186.15810 * 1 2 3 27 27 H 1.09006 * 109.47323 * 304.99700 * 4 2 1 28 28 H 1.09002 * 109.47194 * 64.99663 * 4 2 1 29 29 H 1.08996 * 109.47053 * 299.99570 * 5 4 2 30 30 H 1.08992 * 109.47432 * 59.99745 * 5 4 2 31 31 H 0.97003 * 119.99891 * 180.02562 * 9 8 6 32 32 H 1.09006 * 109.88501 * 242.66396 * 15 14 2 33 33 H 1.08998 * 109.88579 * 3.84457 * 15 14 2 34 34 H 0.96705 * 114.00047 * 61.46066 * 18 16 15 35 35 H 1.09004 * 109.46830 * 53.54208 * 21 19 16 36 36 H 1.08998 * 109.47474 * 173.54283 * 21 19 16 37 37 H 1.00898 * 111.00419 * 56.04245 * 22 21 19 38 38 H 1.00905 * 110.99635 * 179.97438 * 22 21 19 39 39 H 1.08995 * 110.37464 * 332.46157 * 23 14 2 40 40 H 1.08998 * 110.37375 * 94.80919 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.0671 -1.3244 2.5439 7 1 3.3686 -1.8048 3.2130 8 6 5.4183 -1.3606 2.8157 9 7 6.2689 -0.7752 2.0012 10 14 6.0409 -2.2413 4.3409 11 1 5.6483 -3.6723 4.2811 12 1 7.5209 -2.1366 4.4034 13 1 5.4485 -1.6156 5.5503 14 7 2.0197 -0.6925 -1.1994 15 6 1.4294 -2.0391 -1.3102 16 6 0.7215 -2.1168 -2.6791 17 1 -0.3413 -1.8976 -2.5764 18 8 0.9188 -3.3991 -3.2779 19 6 1.4323 -1.0113 -3.5034 20 1 2.3708 -1.3774 -3.9200 21 6 0.5176 -0.4769 -4.6073 22 7 0.2731 -1.5357 -5.5959 23 6 1.6887 0.0687 -2.4229 24 1 -0.3634 0.6065 0.8297 25 1 -0.3633 0.4154 -0.9401 26 1 -0.3634 -1.0217 0.1102 27 1 1.6053 -0.2618 2.1370 28 1 1.7515 -1.7715 1.2055 29 1 3.9994 -1.0729 0.4261 30 1 3.8532 0.4368 1.3574 31 1 7.2195 -0.8010 2.1922 32 1 2.2141 -2.7936 -1.2551 33 1 0.7062 -2.1939 -0.5094 34 1 0.5591 -4.1337 -2.7619 35 1 -0.4303 -0.1604 -4.1721 36 1 0.9951 0.3727 -5.0954 37 1 -0.1101 -2.3592 -5.1566 38 1 -0.3294 -1.2074 -6.3358 39 1 0.7923 0.6685 -2.2658 40 1 2.5256 0.7041 -2.7126 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246582842.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:15 Heat of formation + Delta-G solvation = -55.634992 kcal Electronic energy + Delta-G solvation = -18366.129689 eV Core-core repulsion = 15601.184438 eV Total energy + Delta-G solvation = -2764.945251 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.86041 -36.63756 -35.11166 -33.55343 -32.21178 -29.59377 -28.78994 -27.98696 -25.20399 -23.80831 -22.40051 -20.93897 -20.27376 -18.81284 -17.40674 -16.52710 -16.09660 -15.58015 -15.45075 -14.47426 -14.45662 -13.86496 -13.54171 -13.42386 -13.21840 -12.70844 -12.48943 -12.26219 -12.03655 -11.73054 -11.52297 -11.30172 -11.19138 -10.94739 -10.72562 -10.46129 -10.35665 -10.15876 -10.00946 -9.61611 -9.20368 -8.89671 -8.78188 -8.22147 -7.80472 -5.87355 -3.89213 3.38839 3.43352 3.45437 4.03237 4.18778 4.41249 4.54519 4.73747 4.88601 4.97032 5.18312 5.29765 5.31723 5.42981 5.47758 5.49757 5.54536 5.62779 5.71943 5.75124 6.04608 6.07807 6.18356 6.25707 6.33886 6.38964 6.62493 6.84196 7.02991 7.26771 7.34614 7.37347 7.52717 7.62700 7.84676 8.07151 8.22988 8.57156 9.19476 9.73427 11.23597 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.034831 B = 0.005058 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.700080 B = 5534.248899 C = 5711.525733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.074 3.926 3 H 0.080 0.920 4 C -0.101 4.101 5 C 0.030 3.970 6 C -0.521 4.521 7 H 0.049 0.951 8 C 0.058 3.942 9 N -0.893 5.893 10 Si 0.887 3.113 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.500 5.500 15 C 0.011 3.989 16 C 0.086 3.914 17 H 0.053 0.947 18 O -0.553 6.553 19 C -0.088 4.088 20 H 0.101 0.899 21 C 0.074 3.926 22 N -0.847 5.847 23 C 0.044 3.956 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.032 0.968 30 H 0.009 0.991 31 H 0.259 0.741 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.375 0.625 35 H 0.021 0.979 36 H 0.074 0.926 37 H 0.347 0.653 38 H 0.335 0.665 39 H 0.047 0.953 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.981 -0.088 -11.017 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.035 4.035 3 H 0.098 0.902 4 C -0.138 4.138 5 C -0.007 4.007 6 C -0.560 4.560 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.224 5.224 15 C -0.117 4.117 16 C 0.025 3.975 17 H 0.070 0.930 18 O -0.357 6.357 19 C -0.107 4.107 20 H 0.120 0.880 21 C -0.057 4.057 22 N -0.378 5.378 23 C -0.084 4.084 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.028 0.972 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.222 0.778 35 H 0.039 0.961 36 H 0.093 0.907 37 H 0.162 0.838 38 H 0.147 0.853 39 H 0.066 0.934 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.158 0.292 -11.557 17.516 hybrid contribution -1.769 -0.584 1.640 2.482 sum -14.928 -0.293 -9.918 17.924 Atomic orbital electron populations 1.22562 0.98967 1.01666 1.01280 1.22050 0.90936 0.98898 0.91601 0.90232 1.21701 1.00959 0.98117 0.93059 1.18994 0.87976 0.96724 0.97050 1.21289 0.91863 1.34290 1.08512 0.93224 1.24992 0.97116 0.95738 0.96478 1.69971 1.02240 1.44166 1.36903 0.86745 0.77633 0.80266 0.83820 1.20392 1.21352 1.20430 1.63718 1.56205 1.01229 1.01284 1.23598 0.98607 0.93686 0.95858 1.23158 0.96965 0.84257 0.93074 0.92962 1.86570 1.83250 1.15572 1.50336 1.22357 1.00198 0.93943 0.94238 0.88037 1.21688 0.96991 0.94405 0.92649 1.58624 1.56131 1.08462 1.14543 1.23086 1.00209 0.95808 0.89312 0.92153 0.93351 0.92680 0.93308 0.93525 0.94992 0.97238 0.93135 0.89510 0.91920 0.77845 0.96072 0.90720 0.83836 0.85333 0.93449 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.49 8.56 37.16 0.32 -2.17 16 2 C 0.07 1.24 2.27 -67.72 -0.15 1.09 16 3 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 4 C -0.10 -2.08 4.54 -26.73 -0.12 -2.20 16 5 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 6 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 7 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -27.64 13.29 55.43 0.74 -26.90 16 10 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 N -0.50 -8.35 4.61 -223.30 -1.03 -9.38 16 15 C 0.01 0.16 5.33 -2.84 -0.02 0.15 16 16 C 0.09 1.04 3.32 -24.91 -0.08 0.96 16 17 H 0.05 0.58 8.01 -51.93 -0.42 0.16 16 18 O -0.55 -6.55 12.25 -35.23 -0.43 -6.99 16 19 C -0.09 -1.13 3.01 -88.48 -0.27 -1.39 16 20 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 21 C 0.07 0.78 6.29 -3.82 -0.02 0.76 16 22 N -0.85 -8.79 9.62 -10.37 -0.10 -8.89 16 23 C 0.04 0.60 5.95 -2.29 -0.01 0.59 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.58 6.21 -51.92 -0.32 0.26 16 26 H 0.05 0.71 6.22 -51.93 -0.32 0.39 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.95 6.79 -51.93 -0.35 0.60 16 29 H 0.03 0.91 7.75 -51.93 -0.40 0.51 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.09 1.48 8.06 -51.93 -0.42 1.06 16 33 H 0.06 0.90 4.82 -51.93 -0.25 0.65 16 34 H 0.37 2.98 9.11 45.56 0.42 3.39 16 35 H 0.02 0.21 8.11 -51.93 -0.42 -0.21 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.35 3.62 7.29 -39.29 -0.29 3.34 16 38 H 0.33 2.72 9.08 -39.29 -0.36 2.36 16 39 H 0.05 0.58 5.85 -51.93 -0.30 0.28 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 309.65 15.07 4.67 4.67 Total: -1.00 -32.32 309.65 -8.02 -40.34 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.94 Total: 5.44 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -0.91 Total: -15.41 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -0.39 Total: -45.17 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.43 Total: -6.99 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.32 -8.02 -40.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246582842.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.299 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds