Wall clock time and date at job start Sun Mar 29 2020 22:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47332 * 2 1 4 4 C 1.52996 * 109.46825 * 120.00180 * 2 1 3 5 5 C 1.53001 * 109.47096 * 185.00077 * 4 2 1 6 6 C 1.50707 * 109.47128 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99688 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99911 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00026 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99825 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47152 * 59.99542 * 10 8 6 12 12 H 1.48504 * 109.46834 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47103 * 299.99316 * 10 8 6 14 14 N 1.46896 * 109.47228 * 239.99821 * 2 1 3 15 15 C 1.47447 * 111.00378 * 306.20282 * 14 2 1 16 16 C 1.54311 * 107.23580 * 123.25462 * 15 14 2 17 17 H 1.08999 * 110.70665 * 263.89858 * 16 15 14 18 18 O 1.42898 * 110.70397 * 140.66529 * 16 15 14 19 19 C 1.55141 * 103.02072 * 22.28459 * 16 15 14 20 20 H 1.09003 * 110.98822 * 82.43580 * 19 16 15 21 21 C 1.52997 * 110.99349 * 206.21589 * 19 16 15 22 22 N 1.46906 * 109.47114 * 293.55052 * 21 19 16 23 23 C 1.47851 * 110.99775 * 67.04257 * 14 2 1 24 24 H 1.09003 * 109.47221 * 306.16649 * 1 2 3 25 25 H 1.09008 * 109.46708 * 66.15815 * 1 2 3 26 26 H 1.08995 * 109.47488 * 186.15810 * 1 2 3 27 27 H 1.09006 * 109.47323 * 304.99700 * 4 2 1 28 28 H 1.09002 * 109.47194 * 64.99663 * 4 2 1 29 29 H 1.08996 * 109.47053 * 299.99570 * 5 4 2 30 30 H 1.08992 * 109.47432 * 59.99745 * 5 4 2 31 31 H 0.97003 * 119.99891 * 180.02562 * 9 8 6 32 32 H 1.09006 * 109.88501 * 242.66396 * 15 14 2 33 33 H 1.08998 * 109.88579 * 3.84457 * 15 14 2 34 34 H 0.96705 * 114.00047 * 61.46066 * 18 16 15 35 35 H 1.09004 * 109.46830 * 53.54208 * 21 19 16 36 36 H 1.08998 * 109.47474 * 173.54283 * 21 19 16 37 37 H 1.00898 * 111.00419 * 56.04245 * 22 21 19 38 38 H 1.00905 * 110.99635 * 179.97438 * 22 21 19 39 39 H 1.08995 * 110.37464 * 332.46157 * 23 14 2 40 40 H 1.08998 * 110.37375 * 94.80919 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.0671 -1.3244 2.5439 7 1 3.3686 -1.8048 3.2130 8 6 5.4183 -1.3606 2.8157 9 7 6.2689 -0.7752 2.0012 10 14 6.0409 -2.2413 4.3409 11 1 5.6483 -3.6723 4.2811 12 1 7.5209 -2.1366 4.4034 13 1 5.4485 -1.6156 5.5503 14 7 2.0197 -0.6925 -1.1994 15 6 1.4294 -2.0391 -1.3102 16 6 0.7215 -2.1168 -2.6791 17 1 -0.3413 -1.8976 -2.5764 18 8 0.9188 -3.3991 -3.2779 19 6 1.4323 -1.0113 -3.5034 20 1 2.3708 -1.3774 -3.9200 21 6 0.5176 -0.4769 -4.6073 22 7 0.2731 -1.5357 -5.5959 23 6 1.6887 0.0687 -2.4229 24 1 -0.3634 0.6065 0.8297 25 1 -0.3633 0.4154 -0.9401 26 1 -0.3634 -1.0217 0.1102 27 1 1.6053 -0.2618 2.1370 28 1 1.7515 -1.7715 1.2055 29 1 3.9994 -1.0729 0.4261 30 1 3.8532 0.4368 1.3574 31 1 7.2195 -0.8010 2.1922 32 1 2.2141 -2.7936 -1.2551 33 1 0.7062 -2.1939 -0.5094 34 1 0.5591 -4.1337 -2.7619 35 1 -0.4303 -0.1604 -4.1721 36 1 0.9951 0.3727 -5.0954 37 1 -0.1101 -2.3592 -5.1566 38 1 -0.3294 -1.2074 -6.3358 39 1 0.7923 0.6685 -2.2658 40 1 2.5256 0.7041 -2.7126 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246582842.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:14 Heat of formation + Delta-G solvation = -82.338431 kcal Electronic energy + Delta-G solvation = -18367.287637 eV Core-core repulsion = 15601.184438 eV Total energy + Delta-G solvation = -2766.103199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.99756 -37.79317 -36.09633 -35.33991 -33.80299 -31.29700 -29.89468 -29.11482 -27.07211 -24.86265 -23.69998 -22.73176 -21.30120 -20.19861 -18.39633 -18.33054 -17.62545 -16.56606 -16.51171 -16.39681 -15.53384 -15.07417 -14.81513 -14.60312 -14.39380 -14.26848 -13.91683 -13.52568 -13.39385 -13.14002 -12.88581 -12.78503 -12.76852 -12.35892 -12.24937 -12.09079 -11.76333 -11.54010 -11.29811 -11.24636 -10.98036 -10.92025 -10.49293 -9.54157 -9.02527 -8.14256 -6.25589 1.39113 1.42703 1.50471 2.43067 2.97795 3.17991 3.20335 3.44156 3.72205 3.95662 4.01506 4.04720 4.23730 4.27824 4.39113 4.43372 4.46171 4.52695 4.69595 4.73190 4.81342 4.90856 4.93389 5.02776 5.05330 5.15004 5.28165 5.30671 5.44358 5.57272 5.86505 5.99925 6.15579 6.27310 6.32224 6.32797 6.66415 6.88747 6.94304 7.42879 8.97023 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.034831 B = 0.005058 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.700080 B = 5534.248899 C = 5711.525733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.079 3.921 3 H 0.067 0.933 4 C -0.089 4.089 5 C 0.039 3.961 6 C -0.545 4.545 7 H 0.056 0.944 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.266 1.266 14 N -0.537 5.537 15 C 0.013 3.987 16 C 0.101 3.899 17 H 0.079 0.921 18 O -0.565 6.565 19 C -0.085 4.085 20 H 0.068 0.932 21 C 0.080 3.920 22 N -0.858 5.858 23 C 0.048 3.952 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.047 0.953 29 H -0.002 1.002 30 H -0.022 1.022 31 H 0.261 0.739 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.392 0.608 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.348 0.652 38 H 0.349 0.651 39 H 0.071 0.929 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.185 -0.483 -10.788 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.029 4.029 3 H 0.085 0.915 4 C -0.127 4.127 5 C 0.002 3.998 6 C -0.583 4.583 7 H 0.075 0.925 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.786 3.214 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.191 1.191 14 N -0.261 5.261 15 C -0.116 4.116 16 C 0.041 3.959 17 H 0.097 0.903 18 O -0.372 6.372 19 C -0.104 4.104 20 H 0.087 0.913 21 C -0.051 4.051 22 N -0.390 5.390 23 C -0.080 4.080 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.017 0.983 30 H -0.003 1.003 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.242 0.758 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.089 0.911 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.392 -0.113 -11.334 19.115 hybrid contribution -1.018 -0.469 1.541 1.905 sum -16.410 -0.582 -9.793 19.118 Atomic orbital electron populations 1.22417 0.95375 1.02593 1.02861 1.21835 0.93666 0.97433 0.90016 0.91454 1.21510 0.96660 0.98906 0.95630 1.18809 0.92109 0.93996 0.94912 1.21771 0.92544 1.34543 1.09409 0.92542 1.25974 0.97396 0.96463 1.00032 1.70126 1.02606 1.45568 1.39084 0.85556 0.77017 0.79229 0.79554 1.19283 1.20921 1.19070 1.63532 1.57906 1.02418 1.02284 1.23531 0.97888 0.91981 0.98163 1.23026 0.97688 0.84337 0.90893 0.90295 1.86536 1.83717 1.16109 1.50812 1.22265 0.99499 0.93975 0.94710 0.91331 1.21609 0.97171 0.94330 0.91992 1.58579 1.56902 1.08574 1.14992 1.23065 1.00720 0.95916 0.88313 0.91240 0.91219 0.91899 0.92780 0.93403 0.98325 1.00322 0.93008 0.92819 0.91036 0.75843 0.94141 0.90396 0.83794 0.83788 0.91105 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.56 71.98 0.62 -3.53 16 2 C 0.08 2.63 2.27 44.92 0.10 2.74 16 3 H 0.07 2.38 8.11 -2.39 -0.02 2.36 16 4 C -0.09 -3.72 4.54 30.59 0.14 -3.58 16 5 C 0.04 2.15 4.86 29.85 0.15 2.29 16 6 C -0.54 -32.22 9.11 25.60 0.23 -31.98 16 7 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 8 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 9 N -0.93 -59.36 13.29 21.45 0.28 -59.07 16 10 Si 0.96 45.67 29.54 68.60 2.03 47.70 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 14 N -0.54 -18.06 4.61 -860.38 -3.96 -22.03 16 15 C 0.01 0.37 5.33 86.64 0.46 0.83 16 16 C 0.10 2.28 3.32 31.77 0.11 2.39 16 17 H 0.08 1.44 8.01 -2.39 -0.02 1.42 16 18 O -0.56 -12.62 12.25 -148.98 -1.83 -14.44 16 19 C -0.08 -2.09 3.01 -9.41 -0.03 -2.12 16 20 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 21 C 0.08 1.51 6.29 86.30 0.54 2.05 16 22 N -0.86 -16.00 9.62 -186.71 -1.80 -17.80 16 23 C 0.05 1.27 5.95 86.77 0.52 1.79 16 24 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.07 1.39 6.21 -2.38 -0.01 1.37 16 26 H 0.06 1.42 6.22 -2.39 -0.01 1.40 16 27 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.05 1.96 6.79 -2.39 -0.02 1.94 16 29 H 0.00 -0.10 7.75 -2.39 -0.02 -0.12 16 30 H -0.02 -1.31 8.14 -2.39 -0.02 -1.32 16 31 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 32 H 0.05 1.91 8.06 -2.38 -0.02 1.89 16 33 H 0.07 1.94 4.82 -2.39 -0.01 1.93 16 34 H 0.39 5.58 9.11 -74.05 -0.67 4.90 16 35 H 0.04 0.63 8.11 -2.38 -0.02 0.61 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.35 6.46 7.29 -89.70 -0.65 5.80 16 38 H 0.35 4.82 9.08 -89.69 -0.81 4.01 16 39 H 0.07 1.55 5.85 -2.39 -0.01 1.54 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -71.60 309.65 -3.08 -74.68 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -1.10 Total: 19.71 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 3.30 Total: -28.75 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -5.48 Total: -98.89 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -1.83 Total: -14.44 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.60 -3.08 -74.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246582842.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.661 kcal (2) G-P(sol) polarization free energy of solvation -71.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds