Wall clock time and date at job start Sun Mar 29 2020 22:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46897 * 111.00137 * 2 1 4 4 C 1.46900 * 110.99870 * 123.95148 * 2 1 3 5 5 C 1.52999 * 109.47121 * 75.90855 * 4 2 1 6 6 H 1.08989 * 110.87807 * 306.93310 * 5 4 2 7 7 C 1.55397 * 111.02478 * 70.69870 * 5 4 2 8 8 C 1.54315 * 102.90046 * 153.63480 * 7 5 4 9 9 N 1.47440 * 107.37055 * 337.89203 * 8 7 5 10 10 C 1.46907 * 110.99729 * 236.66001 * 9 8 7 11 11 C 1.52993 * 109.47509 * 293.70283 * 10 9 8 12 12 H 1.09004 * 109.47039 * 60.09812 * 11 10 9 13 13 O 1.42901 * 109.47332 * 300.10355 * 11 10 9 14 14 C 1.50694 * 109.47519 * 180.09979 * 11 10 9 15 15 H 1.08006 * 119.99724 * 0.02562 * 14 11 10 16 16 C 1.37870 * 120.00334 * 180.02562 * 14 11 10 17 17 N 1.31513 * 120.00298 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00341 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.46738 * 60.00002 * 18 16 14 20 20 H 1.48495 * 109.47305 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46936 * 300.00161 * 18 16 14 22 22 C 1.47840 * 108.56700 * 358.92624 * 9 8 7 23 23 H 1.09006 * 109.47026 * 296.04863 * 1 2 3 24 24 H 1.09005 * 109.47064 * 56.04737 * 1 2 3 25 25 H 1.08996 * 109.47429 * 176.05365 * 1 2 3 26 26 H 1.08997 * 109.47174 * 179.02677 * 3 2 1 27 27 H 1.09003 * 109.46836 * 299.02116 * 3 2 1 28 28 H 1.08994 * 109.47445 * 59.02013 * 3 2 1 29 29 H 1.09008 * 109.47147 * 315.90915 * 4 2 1 30 30 H 1.09000 * 109.47374 * 195.91113 * 4 2 1 31 31 H 1.08998 * 110.68058 * 35.32488 * 7 5 4 32 32 H 1.09009 * 110.84188 * 272.01549 * 7 5 4 33 33 H 1.08999 * 109.88778 * 218.40149 * 8 7 5 34 34 H 1.09005 * 109.88947 * 97.37907 * 8 7 5 35 35 H 1.09000 * 109.47047 * 53.70344 * 10 9 8 36 36 H 1.08996 * 109.46965 * 173.69935 * 10 9 8 37 37 H 0.96707 * 113.99818 * 300.00349 * 13 11 10 38 38 H 0.96998 * 120.01048 * 179.97438 * 17 16 14 39 39 H 1.09001 * 110.37084 * 142.92637 * 22 9 8 40 40 H 1.08994 * 110.37813 * 265.26501 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.8502 -2.2627 0.8556 6 1 0.8232 -2.5095 0.5869 7 6 2.8387 -2.7195 -0.2531 8 6 3.0521 -4.2134 0.0698 9 7 2.7122 -4.4094 1.4910 10 6 3.8412 -4.9947 2.2264 11 6 4.0984 -6.4153 1.7200 12 1 4.3361 -6.3844 0.6566 13 8 2.9301 -7.2125 1.9238 14 6 5.2550 -7.0165 2.4760 15 1 5.7563 -6.4429 3.2416 16 6 5.6733 -8.2988 2.1905 17 7 5.0632 -8.9972 1.2579 18 14 7.1066 -9.0444 3.1282 19 1 6.7818 -9.0872 4.5766 20 1 7.3562 -10.4232 2.6365 21 1 8.3207 -8.2157 2.9173 22 6 2.3245 -3.1041 2.0668 23 1 -0.3633 0.4513 0.9233 24 1 -0.3633 0.5740 -0.8525 25 1 -0.3634 -1.0252 -0.0707 26 1 3.0849 1.3423 0.0175 27 1 1.6602 1.8892 -0.8987 28 1 1.6319 1.9002 0.8810 29 1 1.4364 -0.5099 2.0378 30 1 3.0482 -0.5239 1.2826 31 1 3.7781 -2.1715 -0.1809 32 1 2.3956 -2.5983 -1.2417 33 1 4.0933 -4.4851 -0.1034 34 1 2.4007 -4.8245 -0.5550 35 1 4.7318 -4.3862 2.0692 36 1 3.6053 -5.0253 3.2901 37 1 2.6594 -7.2841 2.8495 38 1 5.3577 -9.8993 1.0567 39 1 1.5118 -3.2312 2.7820 40 1 3.1817 -2.6307 2.5454 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261170748.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:02 Heat of formation + Delta-G solvation = -43.651069 kcal Electronic energy + Delta-G solvation = -18017.715584 eV Core-core repulsion = 15253.289995 eV Total energy + Delta-G solvation = -2764.425589 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.06473 -37.18110 -35.30462 -32.08685 -31.82081 -29.17775 -28.02344 -27.77136 -25.89256 -24.08197 -22.09332 -21.34483 -20.13122 -19.25745 -16.93005 -16.23740 -15.33421 -15.25859 -14.97322 -14.55901 -14.22246 -14.18569 -13.56666 -13.17686 -12.98980 -12.67470 -12.51922 -12.19552 -12.04682 -11.88396 -11.55494 -11.41242 -10.91661 -10.87552 -10.79008 -10.67828 -10.62812 -10.35870 -10.19406 -10.00423 -8.90720 -8.52396 -8.49943 -8.01643 -7.54900 -5.95396 -4.14059 3.31378 3.36664 3.38207 3.76016 4.38562 4.56488 4.86751 4.90370 4.96393 5.15084 5.17118 5.31824 5.33420 5.34651 5.49378 5.56066 5.62901 5.66516 5.71582 5.78798 5.93556 6.06594 6.13146 6.22276 6.27126 6.42750 6.46228 6.62500 6.69574 6.85491 6.87114 6.88837 7.59381 7.73237 7.82752 7.93886 8.26360 8.90022 9.52095 9.69137 11.08682 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.055345 B = 0.004285 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.793547 B = 6533.536283 C = 6661.306352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.545 5.545 3 C 0.025 3.975 4 C 0.065 3.935 5 C -0.090 4.090 6 H 0.081 0.919 7 C -0.121 4.121 8 C 0.043 3.957 9 N -0.517 5.517 10 C 0.027 3.973 11 C 0.238 3.762 12 H 0.054 0.946 13 O -0.554 6.554 14 C -0.576 4.576 15 H 0.053 0.947 16 C 0.080 3.920 17 N -0.858 5.858 18 Si 0.889 3.111 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.046 3.954 23 H 0.023 0.977 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.022 0.978 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.026 0.974 36 H 0.060 0.940 37 H 0.342 0.658 38 H 0.261 0.739 39 H 0.071 0.929 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.684 17.522 -1.136 18.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.269 5.269 3 C -0.123 4.123 4 C -0.063 4.063 5 C -0.110 4.110 6 H 0.100 0.900 7 C -0.160 4.160 8 C -0.085 4.085 9 N -0.241 5.241 10 C -0.101 4.101 11 C 0.179 3.821 12 H 0.071 0.929 13 O -0.355 6.355 14 C -0.614 4.614 15 H 0.071 0.929 16 C -0.126 4.126 17 N -0.494 5.494 18 Si 0.716 3.284 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.083 4.083 23 H 0.042 0.958 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.044 0.956 36 H 0.079 0.921 37 H 0.185 0.815 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.899 16.704 -2.298 18.218 hybrid contribution 1.338 0.630 1.857 2.374 sum -5.562 17.334 -0.441 18.209 Atomic orbital electron populations 1.22429 0.87392 1.02558 1.00120 1.61919 1.07971 1.13397 1.43597 1.22388 1.00592 0.88944 1.00417 1.22138 0.99845 0.93521 0.90844 1.22305 1.00326 0.92555 0.95804 0.90044 1.22743 0.98439 0.95907 0.98899 1.22812 1.00612 0.94747 0.90323 1.63605 1.37753 1.20919 1.01837 1.23225 0.89583 0.99709 0.97606 1.19318 0.83611 0.82689 0.96441 0.92874 1.86561 1.46987 1.73771 1.28224 1.21640 1.17267 1.00218 1.22272 0.92864 1.25018 0.95947 0.97076 0.94556 1.70072 1.39249 1.10295 1.29796 0.86748 0.82971 0.78305 0.80387 1.20160 1.21186 1.20239 1.23035 0.99246 0.89641 0.96342 0.95821 0.91609 0.90963 0.91437 0.91475 0.95917 0.94587 0.90996 0.92200 0.90954 0.92578 0.90933 0.95618 0.92110 0.81540 0.92962 0.91072 0.94398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.40 60.06 0.56 0.78 16 2 N -0.55 -5.74 4.86 -251.26 -1.22 -6.96 16 3 C 0.02 0.21 9.56 60.06 0.57 0.79 16 4 C 0.06 0.72 4.45 -3.82 -0.02 0.70 16 5 C -0.09 -1.19 3.09 -88.34 -0.27 -1.46 16 6 H 0.08 1.09 6.84 -51.94 -0.36 0.74 16 7 C -0.12 -1.73 6.35 -24.77 -0.16 -1.89 16 8 C 0.04 0.77 6.17 -2.84 -0.02 0.75 16 9 N -0.52 -9.84 5.05 -231.26 -1.17 -11.00 16 10 C 0.03 0.57 4.13 -3.82 -0.02 0.56 16 11 C 0.24 6.19 2.74 -27.89 -0.08 6.11 16 12 H 0.05 1.52 6.90 -51.93 -0.36 1.17 16 13 O -0.55 -14.92 12.60 -35.23 -0.44 -15.37 16 14 C -0.58 -16.12 8.76 -34.45 -0.30 -16.42 16 15 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 16 C 0.08 2.28 5.40 -17.82 -0.10 2.19 16 17 N -0.86 -25.86 12.84 55.43 0.71 -25.15 16 18 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.05 0.70 6.18 -2.30 -0.01 0.69 16 23 H 0.02 0.20 8.09 -51.93 -0.42 -0.22 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.69 6.83 -51.93 -0.35 0.33 16 26 H 0.07 0.57 7.95 -51.93 -0.41 0.15 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.04 0.38 7.96 -51.92 -0.41 -0.03 16 30 H 0.07 0.80 7.69 -51.93 -0.40 0.40 16 31 H 0.06 0.84 7.95 -51.93 -0.41 0.43 16 32 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 33 H 0.06 1.09 6.73 -51.93 -0.35 0.74 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.03 0.55 8.06 -51.93 -0.42 0.13 16 36 H 0.06 1.27 8.11 -51.93 -0.42 0.85 16 37 H 0.34 8.29 9.04 45.56 0.41 8.70 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.04 0.57 7.70 -51.93 -0.40 0.17 16 LS Contribution 317.21 15.07 4.78 4.78 Total: -1.00 -30.92 317.21 -8.57 -39.49 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.38 Total: 5.02 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 0.17 Total: -7.20 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: -1.68 Total: -43.11 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.44 Total: -15.37 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.92 -8.57 -39.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261170748.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.161 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds