Wall clock time and date at job start Sun Mar 29 2020 22:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46897 * 111.00137 * 2 1 4 4 C 1.46900 * 110.99870 * 123.95148 * 2 1 3 5 5 C 1.52999 * 109.47121 * 75.90855 * 4 2 1 6 6 H 1.08989 * 110.87807 * 306.93310 * 5 4 2 7 7 C 1.55397 * 111.02478 * 70.69870 * 5 4 2 8 8 C 1.54315 * 102.90046 * 153.63480 * 7 5 4 9 9 N 1.47440 * 107.37055 * 337.89203 * 8 7 5 10 10 C 1.46907 * 110.99729 * 236.66001 * 9 8 7 11 11 C 1.52993 * 109.47509 * 293.70283 * 10 9 8 12 12 H 1.09004 * 109.47039 * 60.09812 * 11 10 9 13 13 O 1.42901 * 109.47332 * 300.10355 * 11 10 9 14 14 C 1.50694 * 109.47519 * 180.09979 * 11 10 9 15 15 H 1.08006 * 119.99724 * 0.02562 * 14 11 10 16 16 C 1.37870 * 120.00334 * 180.02562 * 14 11 10 17 17 N 1.31513 * 120.00298 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00341 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.46738 * 60.00002 * 18 16 14 20 20 H 1.48495 * 109.47305 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46936 * 300.00161 * 18 16 14 22 22 C 1.47840 * 108.56700 * 358.92624 * 9 8 7 23 23 H 1.09006 * 109.47026 * 296.04863 * 1 2 3 24 24 H 1.09005 * 109.47064 * 56.04737 * 1 2 3 25 25 H 1.08996 * 109.47429 * 176.05365 * 1 2 3 26 26 H 1.08997 * 109.47174 * 179.02677 * 3 2 1 27 27 H 1.09003 * 109.46836 * 299.02116 * 3 2 1 28 28 H 1.08994 * 109.47445 * 59.02013 * 3 2 1 29 29 H 1.09008 * 109.47147 * 315.90915 * 4 2 1 30 30 H 1.09000 * 109.47374 * 195.91113 * 4 2 1 31 31 H 1.08998 * 110.68058 * 35.32488 * 7 5 4 32 32 H 1.09009 * 110.84188 * 272.01549 * 7 5 4 33 33 H 1.08999 * 109.88778 * 218.40149 * 8 7 5 34 34 H 1.09005 * 109.88947 * 97.37907 * 8 7 5 35 35 H 1.09000 * 109.47047 * 53.70344 * 10 9 8 36 36 H 1.08996 * 109.46965 * 173.69935 * 10 9 8 37 37 H 0.96707 * 113.99818 * 300.00349 * 13 11 10 38 38 H 0.96998 * 120.01048 * 179.97438 * 17 16 14 39 39 H 1.09001 * 110.37084 * 142.92637 * 22 9 8 40 40 H 1.08994 * 110.37813 * 265.26501 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.8502 -2.2627 0.8556 6 1 0.8232 -2.5095 0.5869 7 6 2.8387 -2.7195 -0.2531 8 6 3.0521 -4.2134 0.0698 9 7 2.7122 -4.4094 1.4910 10 6 3.8412 -4.9947 2.2264 11 6 4.0984 -6.4153 1.7200 12 1 4.3361 -6.3844 0.6566 13 8 2.9301 -7.2125 1.9238 14 6 5.2550 -7.0165 2.4760 15 1 5.7563 -6.4429 3.2416 16 6 5.6733 -8.2988 2.1905 17 7 5.0632 -8.9972 1.2579 18 14 7.1066 -9.0444 3.1282 19 1 6.7818 -9.0872 4.5766 20 1 7.3562 -10.4232 2.6365 21 1 8.3207 -8.2157 2.9173 22 6 2.3245 -3.1041 2.0668 23 1 -0.3633 0.4513 0.9233 24 1 -0.3633 0.5740 -0.8525 25 1 -0.3634 -1.0252 -0.0707 26 1 3.0849 1.3423 0.0175 27 1 1.6602 1.8892 -0.8987 28 1 1.6319 1.9002 0.8810 29 1 1.4364 -0.5099 2.0378 30 1 3.0482 -0.5239 1.2826 31 1 3.7781 -2.1715 -0.1809 32 1 2.3956 -2.5983 -1.2417 33 1 4.0933 -4.4851 -0.1034 34 1 2.4007 -4.8245 -0.5550 35 1 4.7318 -4.3862 2.0692 36 1 3.6053 -5.0253 3.2901 37 1 2.6594 -7.2841 2.8495 38 1 5.3577 -9.8993 1.0567 39 1 1.5118 -3.2312 2.7820 40 1 3.1817 -2.6307 2.5454 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261170748.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:01 Heat of formation + Delta-G solvation = -68.075690 kcal Electronic energy + Delta-G solvation = -18018.774715 eV Core-core repulsion = 15253.289995 eV Total energy + Delta-G solvation = -2765.484720 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33700 -38.29737 -37.11699 -34.23069 -33.27436 -30.47049 -29.79933 -28.44482 -27.27490 -25.70676 -23.29910 -22.78439 -21.44480 -20.65785 -19.03444 -17.38355 -16.66812 -16.57329 -16.15184 -16.09936 -16.04917 -15.43448 -15.07084 -14.69056 -14.40072 -13.89628 -13.77772 -13.34896 -13.26085 -12.99793 -12.85461 -12.78256 -12.57489 -12.51575 -12.49482 -12.04886 -11.95247 -11.77342 -11.69683 -11.41049 -10.98333 -10.68933 -10.07341 -9.25947 -9.08296 -8.12444 -6.39482 1.40606 1.42838 1.51057 2.38937 2.95406 3.12592 3.19529 3.77427 3.87631 3.90076 4.24161 4.28655 4.38431 4.42139 4.45508 4.49192 4.53553 4.62921 4.64502 4.73998 4.79036 4.82704 4.84303 5.02918 5.03100 5.04203 5.06781 5.12290 5.23571 5.42844 5.60071 5.76256 6.01545 6.08977 6.14037 6.21824 6.28740 6.74404 7.35074 7.63175 8.92005 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.055345 B = 0.004285 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.793547 B = 6533.536283 C = 6661.306352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.561 5.561 3 C 0.025 3.975 4 C 0.072 3.928 5 C -0.078 4.078 6 H 0.081 0.919 7 C -0.108 4.108 8 C 0.042 3.958 9 N -0.534 5.534 10 C 0.046 3.954 11 C 0.237 3.763 12 H 0.017 0.983 13 O -0.571 6.571 14 C -0.592 4.592 15 H 0.059 0.941 16 C 0.025 3.975 17 N -0.900 5.900 18 Si 0.962 3.038 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.268 1.268 22 C 0.046 3.954 23 H 0.030 0.970 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.029 0.971 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.033 0.967 34 H 0.057 0.943 35 H 0.025 0.975 36 H 0.068 0.932 37 H 0.352 0.648 38 H 0.261 0.739 39 H 0.080 0.920 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.584 19.173 -0.155 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.285 5.285 3 C -0.123 4.123 4 C -0.056 4.056 5 C -0.098 4.098 6 H 0.099 0.901 7 C -0.147 4.147 8 C -0.086 4.086 9 N -0.258 5.258 10 C -0.082 4.082 11 C 0.179 3.821 12 H 0.034 0.966 13 O -0.374 6.374 14 C -0.630 4.630 15 H 0.078 0.922 16 C -0.177 4.177 17 N -0.537 5.537 18 Si 0.786 3.214 19 H -0.190 1.190 20 H -0.210 1.210 21 H -0.193 1.193 22 C -0.082 4.082 23 H 0.048 0.952 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.196 0.804 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.806 18.384 -1.306 19.647 hybrid contribution 1.248 0.130 1.509 1.963 sum -5.558 18.514 0.203 19.331 Atomic orbital electron populations 1.22448 0.86672 1.02420 1.00947 1.61893 1.08786 1.14506 1.43285 1.22418 1.00641 0.87989 1.01222 1.22006 1.00215 0.91879 0.91527 1.22208 0.99668 0.93872 0.94007 0.90113 1.22635 0.99200 0.93001 0.99845 1.22762 0.98754 0.97247 0.89847 1.63503 1.36515 1.23567 1.02200 1.22807 0.90576 0.96963 0.97864 1.19180 0.83153 0.85317 0.94402 0.96551 1.86503 1.47224 1.74435 1.29214 1.22044 1.17872 1.00686 1.22379 0.92236 1.25927 0.98787 0.97611 0.95391 1.70223 1.41230 1.10674 1.31596 0.85582 0.79349 0.77289 0.79161 1.19048 1.20960 1.19301 1.23107 0.99762 0.88081 0.97273 0.95192 0.90547 0.91645 0.91368 0.90539 0.95233 0.93675 0.90852 0.91674 0.90086 0.94861 0.92498 0.95729 0.91386 0.80391 0.92968 0.90139 0.93661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.40 127.69 1.20 1.57 16 2 N -0.56 -10.42 4.86 -948.85 -4.61 -15.03 16 3 C 0.03 0.37 9.56 127.69 1.22 1.59 16 4 C 0.07 1.42 4.45 86.30 0.38 1.81 16 5 C -0.08 -1.91 3.09 -9.32 -0.03 -1.94 16 6 H 0.08 2.02 6.84 -2.39 -0.02 2.00 16 7 C -0.11 -2.99 6.35 31.86 0.20 -2.78 16 8 C 0.04 1.53 6.17 86.65 0.53 2.07 16 9 N -0.53 -20.23 5.05 -885.56 -4.47 -24.70 16 10 C 0.05 1.99 4.13 86.30 0.36 2.34 16 11 C 0.24 12.69 2.74 29.84 0.08 12.77 16 12 H 0.02 1.00 6.90 -2.38 -0.02 0.98 16 13 O -0.57 -31.44 12.60 -148.98 -1.88 -33.31 16 14 C -0.59 -33.37 8.76 25.60 0.22 -33.14 16 15 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 16 C 0.03 1.44 5.40 84.65 0.46 1.90 16 17 N -0.90 -55.26 12.84 21.44 0.28 -54.98 16 18 Si 0.96 43.91 29.54 68.60 2.03 45.93 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 22 C 0.05 1.32 6.18 86.78 0.54 1.86 16 23 H 0.03 0.44 8.09 -2.38 -0.02 0.42 16 24 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.06 1.12 6.83 -2.39 -0.02 1.11 16 26 H 0.07 0.98 7.95 -2.39 -0.02 0.96 16 27 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.05 0.82 7.96 -2.38 -0.02 0.81 16 30 H 0.07 1.44 7.69 -2.39 -0.02 1.42 16 31 H 0.06 1.74 7.95 -2.39 -0.02 1.72 16 32 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.03 1.34 6.73 -2.39 -0.02 1.33 16 34 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.02 1.05 8.06 -2.39 -0.02 1.03 16 36 H 0.07 2.79 8.11 -2.39 -0.02 2.78 16 37 H 0.35 17.31 9.04 -74.05 -0.67 16.64 16 38 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.05 1.26 7.70 -2.39 -0.02 1.24 16 Total: -1.00 -66.13 317.21 -3.16 -69.29 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.33 Total: 24.77 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 5.17 Total: -11.96 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -8.81 Total: -94.72 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -1.88 Total: -33.31 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -66.13 -3.16 -69.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261170748.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.218 kcal (2) G-P(sol) polarization free energy of solvation -66.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds