Wall clock time and date at job start Sun Mar 29 2020 22:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46973 * 2 1 4 4 O 1.42898 * 109.46893 * 239.99912 * 2 1 3 5 5 C 1.52996 * 109.46835 * 119.99888 * 2 1 3 6 6 H 1.09007 * 109.47432 * 299.99891 * 5 2 1 7 7 C 1.53005 * 109.47280 * 179.97438 * 5 2 1 8 8 N 1.46908 * 109.47346 * 60.00103 * 5 2 1 9 9 C 1.46894 * 110.99854 * 200.62893 * 8 5 2 10 10 C 1.53044 * 109.45723 * 207.07625 * 9 8 5 11 11 C 1.53195 * 109.31340 * 178.59871 * 10 9 8 12 12 N 1.46923 * 108.76114 * 54.65907 * 11 10 9 13 13 C 1.36935 * 120.63288 * 126.36525 * 12 11 10 14 14 H 1.08004 * 120.00346 * 214.91134 * 13 12 11 15 15 C 1.38821 * 120.00110 * 34.90257 * 13 12 11 16 16 N 1.31617 * 119.99762 * 15.21917 * 15 13 12 17 17 Si 1.86792 * 120.00017 * 195.22023 * 15 13 12 18 18 H 1.48506 * 109.47312 * 59.99688 * 17 15 13 19 19 H 1.48493 * 109.47190 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47143 * 300.00087 * 17 15 13 21 21 C 1.46927 * 118.73923 * 306.37970 * 12 11 10 22 22 C 1.53040 * 109.46258 * 87.02235 * 9 8 5 23 23 H 1.09010 * 109.47468 * 300.00206 * 1 2 3 24 24 H 1.08995 * 109.47112 * 59.99635 * 1 2 3 25 25 H 1.08998 * 109.47487 * 179.97438 * 1 2 3 26 26 H 0.96700 * 113.99841 * 60.00566 * 4 2 1 27 27 H 1.08998 * 109.47239 * 183.01410 * 7 5 2 28 28 H 1.08996 * 109.46923 * 303.01879 * 7 5 2 29 29 H 1.09003 * 109.46583 * 63.01364 * 7 5 2 30 30 H 1.00899 * 110.99561 * 76.66812 * 8 5 2 31 31 H 1.08998 * 109.46466 * 327.04561 * 9 8 5 32 32 H 1.09003 * 109.49701 * 298.56544 * 10 9 8 33 33 H 1.09000 * 109.49833 * 58.65982 * 10 9 8 34 34 H 1.08993 * 109.60040 * 294.86409 * 11 10 9 35 35 H 1.09001 * 109.58294 * 174.43621 * 11 10 9 36 36 H 0.96996 * 119.99647 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.58402 * 293.82732 * 21 12 11 38 38 H 1.08998 * 109.70649 * 173.47354 * 21 12 11 39 39 H 1.08990 * 109.49625 * 301.33073 * 22 9 8 40 40 H 1.08999 * 109.49647 * 61.40463 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0399 -0.7212 1.2492 6 1 1.6766 -0.2074 2.1393 7 6 3.5700 -0.7218 1.2490 8 7 1.5502 -2.1063 1.2493 9 6 1.5852 -2.6769 2.6024 10 6 1.7379 -4.1970 2.5108 11 6 1.8092 -4.7851 3.9236 12 7 0.6303 -4.3418 4.6800 13 6 -0.1817 -5.2516 5.3029 14 1 -1.2461 -5.0769 5.3580 15 6 0.3632 -6.3988 5.8636 16 7 1.6610 -6.4790 6.0675 17 14 -0.7454 -7.8284 6.3285 18 1 -1.4517 -8.3210 5.1186 19 1 0.0750 -8.9242 6.9040 20 1 -1.7412 -7.3763 7.3331 21 6 0.3388 -2.9037 4.7552 22 6 0.2844 -2.3366 3.3332 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.7210 -0.2701 -1.9979 27 1 3.9332 -1.2817 2.1108 28 1 3.9329 -1.1884 0.3333 29 1 3.9336 0.3043 1.3028 30 1 2.0758 -2.6756 0.6029 31 1 2.4297 -2.2596 3.1508 32 1 0.8812 -4.6176 1.9842 33 1 2.6527 -4.4388 1.9697 34 1 2.7145 -4.4356 4.4198 35 1 1.8185 -5.8735 3.8662 36 1 2.0418 -7.2806 6.4589 37 1 1.1243 -2.4007 5.3193 38 1 -0.6212 -2.7485 5.2475 39 1 0.1645 -1.2542 3.3775 40 1 -0.5585 -2.7745 2.7985 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331959617.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:02 Heat of formation + Delta-G solvation = -43.000757 kcal Electronic energy + Delta-G solvation = -18536.164215 eV Core-core repulsion = 15771.766825 eV Total energy + Delta-G solvation = -2764.397389 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.77871 -37.24601 -35.01191 -32.64098 -30.94419 -29.83279 -29.60832 -27.95866 -24.60083 -23.56441 -22.19322 -21.37911 -20.10674 -19.00910 -17.28804 -16.68864 -15.17079 -15.05475 -14.69529 -14.51798 -13.83436 -13.69362 -13.44719 -13.20232 -13.01899 -12.54432 -12.27531 -12.19075 -11.95391 -11.69744 -11.31303 -11.18294 -11.03510 -10.71243 -10.67550 -10.50540 -10.27519 -10.14135 -10.00909 -9.88760 -9.53611 -9.34458 -8.42673 -7.98776 -6.51606 -5.74992 -3.23523 3.41159 3.46344 3.48236 4.26903 4.44030 4.53508 4.80655 5.08997 5.27186 5.37220 5.41947 5.48628 5.53393 5.65891 5.66635 5.76771 5.82646 5.90811 6.00748 6.07472 6.24055 6.32518 6.42122 6.43045 6.58419 6.64028 6.72052 6.74291 6.91473 7.12400 7.38716 7.46071 7.63616 7.68032 7.81671 7.86138 8.54690 9.27180 9.88929 10.50880 11.33348 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.045944 B = 0.005173 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.285906 B = 5410.997052 C = 5568.194040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.113 3.887 3 H 0.047 0.953 4 O -0.562 6.562 5 C 0.091 3.909 6 H 0.085 0.915 7 C -0.181 4.181 8 N -0.675 5.675 9 C 0.095 3.905 10 C -0.141 4.141 11 C 0.179 3.821 12 N -0.589 5.589 13 C -0.257 4.257 14 H 0.061 0.939 15 C 0.009 3.991 16 N -0.901 5.901 17 Si 0.901 3.099 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.145 3.855 22 C -0.115 4.115 23 H 0.058 0.942 24 H 0.044 0.956 25 H 0.081 0.919 26 H 0.371 0.629 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.342 0.658 31 H 0.036 0.964 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.017 0.983 35 H 0.075 0.925 36 H 0.254 0.746 37 H 0.013 0.987 38 H 0.053 0.947 39 H 0.043 0.957 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.077 12.418 -11.571 17.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.054 3.946 3 H 0.065 0.935 4 O -0.367 6.367 5 C -0.020 4.020 6 H 0.103 0.897 7 C -0.239 4.239 8 N -0.306 5.306 9 C -0.014 4.014 10 C -0.180 4.180 11 C 0.052 3.948 12 N -0.312 5.312 13 C -0.387 4.387 14 H 0.078 0.922 15 C -0.191 4.191 16 N -0.544 5.544 17 Si 0.731 3.269 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.208 1.208 21 C 0.018 3.982 22 C -0.155 4.155 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.217 0.783 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.161 0.839 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.035 0.965 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.031 0.969 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.781 12.061 -10.976 16.326 hybrid contribution 0.248 -0.455 0.008 0.518 sum 1.029 11.605 -10.968 16.001 Atomic orbital electron populations 1.22358 0.96023 1.04021 1.00906 1.21826 0.93377 0.93703 0.85685 0.93524 1.86526 1.76765 1.57781 1.15649 1.21592 0.92689 0.91683 0.96026 0.89656 1.22450 0.97373 1.01787 1.02339 1.60645 1.59229 1.01695 1.08989 1.21470 0.97080 0.94976 0.87912 1.22394 1.00165 0.94132 1.01358 1.20623 0.88871 0.99149 0.86145 1.43934 1.29492 0.99833 1.57949 1.19074 0.89304 1.00446 1.29871 0.92160 1.25212 0.95774 1.00354 0.97732 1.70019 1.10466 1.27777 1.46152 0.86401 0.79933 0.82228 0.78354 1.20917 1.21654 1.20804 1.20937 0.98224 0.86232 0.92819 1.22003 0.97238 0.98401 0.97869 0.92255 0.93679 0.90040 0.78309 0.92580 0.91772 0.92867 0.83885 0.94605 0.91911 0.93740 0.96482 0.90623 0.93620 0.96931 0.92834 0.93808 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 9.38 37.16 0.35 -1.52 16 2 C 0.11 1.22 3.39 -26.73 -0.09 1.13 16 3 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 4 O -0.56 -6.12 12.37 -35.23 -0.44 -6.55 16 5 C 0.09 1.15 2.26 -67.71 -0.15 1.00 16 6 H 0.09 1.11 7.27 -51.93 -0.38 0.74 16 7 C -0.18 -2.21 9.06 37.16 0.34 -1.87 16 8 N -0.67 -10.02 5.17 -99.69 -0.52 -10.54 16 9 C 0.09 1.65 2.25 -67.67 -0.15 1.50 16 10 C -0.14 -2.76 5.34 -26.61 -0.14 -2.91 16 11 C 0.18 4.34 5.26 -3.71 -0.02 4.32 16 12 N -0.59 -15.16 2.95 -172.32 -0.51 -15.67 16 13 C -0.26 -7.22 9.51 -15.06 -0.14 -7.37 16 14 H 0.06 1.67 7.87 -52.48 -0.41 1.26 16 15 C 0.01 0.25 4.91 -17.43 -0.09 0.16 16 16 N -0.90 -26.63 11.62 55.49 0.64 -25.99 16 17 Si 0.90 21.97 29.58 -169.99 -5.03 16.94 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C 0.14 3.16 6.51 -3.71 -0.02 3.14 16 22 C -0.12 -2.12 5.59 -26.61 -0.15 -2.26 16 23 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 24 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 1.05 7.60 -51.93 -0.39 0.66 16 26 H 0.37 2.53 9.08 45.56 0.41 2.94 16 27 H 0.06 0.74 7.09 -51.93 -0.37 0.37 16 28 H 0.06 0.81 7.59 -51.93 -0.39 0.42 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.34 5.20 8.01 -39.29 -0.31 4.89 16 31 H 0.04 0.65 6.78 -51.93 -0.35 0.30 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.04 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 2.04 6.54 -51.93 -0.34 1.70 16 36 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.05 1.15 7.94 -51.93 -0.41 0.74 16 39 H 0.04 0.71 7.51 -51.93 -0.39 0.32 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 311.34 15.07 4.69 4.69 Total: -1.00 -30.07 311.34 -7.71 -37.78 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.28 Total: 4.01 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -0.27 Total: -4.67 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.38 Total: -52.20 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.44 Total: -6.55 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.07 -7.71 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331959617.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.225 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds