Wall clock time and date at job start Sun Mar 29 2020 22:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46973 * 2 1 4 4 O 1.42898 * 109.46893 * 239.99912 * 2 1 3 5 5 C 1.52996 * 109.46835 * 119.99888 * 2 1 3 6 6 H 1.09007 * 109.47432 * 299.99891 * 5 2 1 7 7 C 1.53005 * 109.47280 * 179.97438 * 5 2 1 8 8 N 1.46908 * 109.47346 * 60.00103 * 5 2 1 9 9 C 1.46894 * 110.99854 * 200.62893 * 8 5 2 10 10 C 1.53044 * 109.45723 * 207.07625 * 9 8 5 11 11 C 1.53195 * 109.31340 * 178.59871 * 10 9 8 12 12 N 1.46923 * 108.76114 * 54.65907 * 11 10 9 13 13 C 1.36935 * 120.63288 * 126.36525 * 12 11 10 14 14 H 1.08004 * 120.00346 * 214.91134 * 13 12 11 15 15 C 1.38821 * 120.00110 * 34.90257 * 13 12 11 16 16 N 1.31617 * 119.99762 * 15.21917 * 15 13 12 17 17 Si 1.86792 * 120.00017 * 195.22023 * 15 13 12 18 18 H 1.48506 * 109.47312 * 59.99688 * 17 15 13 19 19 H 1.48493 * 109.47190 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47143 * 300.00087 * 17 15 13 21 21 C 1.46927 * 118.73923 * 306.37970 * 12 11 10 22 22 C 1.53040 * 109.46258 * 87.02235 * 9 8 5 23 23 H 1.09010 * 109.47468 * 300.00206 * 1 2 3 24 24 H 1.08995 * 109.47112 * 59.99635 * 1 2 3 25 25 H 1.08998 * 109.47487 * 179.97438 * 1 2 3 26 26 H 0.96700 * 113.99841 * 60.00566 * 4 2 1 27 27 H 1.08998 * 109.47239 * 183.01410 * 7 5 2 28 28 H 1.08996 * 109.46923 * 303.01879 * 7 5 2 29 29 H 1.09003 * 109.46583 * 63.01364 * 7 5 2 30 30 H 1.00899 * 110.99561 * 76.66812 * 8 5 2 31 31 H 1.08998 * 109.46466 * 327.04561 * 9 8 5 32 32 H 1.09003 * 109.49701 * 298.56544 * 10 9 8 33 33 H 1.09000 * 109.49833 * 58.65982 * 10 9 8 34 34 H 1.08993 * 109.60040 * 294.86409 * 11 10 9 35 35 H 1.09001 * 109.58294 * 174.43621 * 11 10 9 36 36 H 0.96996 * 119.99647 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.58402 * 293.82732 * 21 12 11 38 38 H 1.08998 * 109.70649 * 173.47354 * 21 12 11 39 39 H 1.08990 * 109.49625 * 301.33073 * 22 9 8 40 40 H 1.08999 * 109.49647 * 61.40463 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0399 -0.7212 1.2492 6 1 1.6766 -0.2074 2.1393 7 6 3.5700 -0.7218 1.2490 8 7 1.5502 -2.1063 1.2493 9 6 1.5852 -2.6769 2.6024 10 6 1.7379 -4.1970 2.5108 11 6 1.8092 -4.7851 3.9236 12 7 0.6303 -4.3418 4.6800 13 6 -0.1817 -5.2516 5.3029 14 1 -1.2461 -5.0769 5.3580 15 6 0.3632 -6.3988 5.8636 16 7 1.6610 -6.4790 6.0675 17 14 -0.7454 -7.8284 6.3285 18 1 -1.4517 -8.3210 5.1186 19 1 0.0750 -8.9242 6.9040 20 1 -1.7412 -7.3763 7.3331 21 6 0.3388 -2.9037 4.7552 22 6 0.2844 -2.3366 3.3332 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.7210 -0.2701 -1.9979 27 1 3.9332 -1.2817 2.1108 28 1 3.9329 -1.1884 0.3333 29 1 3.9336 0.3043 1.3028 30 1 2.0758 -2.6756 0.6029 31 1 2.4297 -2.2596 3.1508 32 1 0.8812 -4.6176 1.9842 33 1 2.6527 -4.4388 1.9697 34 1 2.7145 -4.4356 4.4198 35 1 1.8185 -5.8735 3.8662 36 1 2.0418 -7.2806 6.4589 37 1 1.1243 -2.4007 5.3193 38 1 -0.6212 -2.7485 5.2475 39 1 0.1645 -1.2542 3.3775 40 1 -0.5585 -2.7745 2.7985 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331959617.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:02 Heat of formation + Delta-G solvation = -64.723963 kcal Electronic energy + Delta-G solvation = -18537.106204 eV Core-core repulsion = 15771.766825 eV Total energy + Delta-G solvation = -2765.339378 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.02886 -38.56525 -36.37597 -34.32980 -32.52078 -31.50245 -30.73291 -29.38431 -26.46502 -24.62829 -23.84946 -23.05186 -21.14688 -20.70785 -18.70215 -18.12522 -16.86661 -16.37751 -16.08455 -15.68197 -15.34634 -15.32389 -14.81741 -14.73452 -14.37136 -13.91829 -13.71399 -13.45895 -13.09271 -13.05182 -12.90057 -12.60499 -12.53166 -12.47255 -12.16464 -12.04039 -11.99272 -11.79029 -11.53470 -11.18302 -11.07891 -10.73884 -10.55494 -9.20643 -8.60054 -7.88630 -5.41454 1.46163 1.48756 1.55716 2.50612 3.18354 3.30240 3.53485 3.70547 3.88802 4.04209 4.10646 4.24818 4.42351 4.47294 4.49819 4.55115 4.62178 4.71743 4.77184 4.86595 4.91816 4.99623 5.02818 5.10703 5.15788 5.19487 5.27807 5.37446 5.39683 5.48706 5.58029 5.65198 5.70764 6.24718 6.41960 6.57975 7.05288 7.15340 7.84057 8.40727 9.17215 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.045944 B = 0.005173 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.285906 B = 5410.997052 C = 5568.194040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.118 3.882 3 H 0.069 0.931 4 O -0.578 6.578 5 C 0.085 3.915 6 H 0.085 0.915 7 C -0.174 4.174 8 N -0.669 5.669 9 C 0.106 3.894 10 C -0.126 4.126 11 C 0.186 3.814 12 N -0.608 5.608 13 C -0.272 4.272 14 H 0.061 0.939 15 C -0.043 4.043 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.277 1.277 19 H -0.292 1.292 20 H -0.273 1.273 21 C 0.141 3.859 22 C -0.100 4.100 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.389 0.611 27 H 0.040 0.960 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.342 0.658 31 H 0.031 0.969 32 H 0.054 0.946 33 H 0.062 0.938 34 H -0.004 1.004 35 H 0.042 0.958 36 H 0.251 0.749 37 H 0.009 0.991 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.489 13.872 -12.871 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.059 3.941 3 H 0.087 0.913 4 O -0.386 6.386 5 C -0.025 4.025 6 H 0.103 0.897 7 C -0.233 4.233 8 N -0.300 5.300 9 C -0.003 4.003 10 C -0.166 4.166 11 C 0.060 3.940 12 N -0.332 5.332 13 C -0.402 4.402 14 H 0.078 0.922 15 C -0.239 4.239 16 N -0.578 5.578 17 Si 0.795 3.205 18 H -0.203 1.203 19 H -0.218 1.218 20 H -0.198 1.198 21 C 0.015 3.985 22 C -0.140 4.140 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.238 0.762 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.161 0.839 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.014 0.986 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.027 0.973 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.178 13.554 -12.307 18.308 hybrid contribution 0.448 -0.839 0.391 1.029 sum 0.626 12.715 -11.916 17.437 Atomic orbital electron populations 1.22306 0.95945 1.02643 1.01998 1.21758 0.93289 0.94229 0.84812 0.91336 1.86479 1.77009 1.58501 1.16620 1.21746 0.93080 0.90255 0.97433 0.89675 1.22371 0.96941 1.02629 1.01365 1.60592 1.59639 1.02782 1.06997 1.21214 0.96375 0.93261 0.89476 1.22157 1.00694 0.95691 0.98038 1.20423 0.87754 0.97302 0.88560 1.44205 1.29420 1.01253 1.58297 1.19406 0.89779 1.01331 1.29679 0.92156 1.25983 0.97081 1.02781 0.98059 1.70168 1.12162 1.28203 1.47301 0.85353 0.78146 0.78818 0.78182 1.20331 1.21827 1.19848 1.21075 0.97933 0.84303 0.95185 1.21799 0.97242 0.99679 0.95259 0.92171 0.91675 0.92545 0.76191 0.94071 0.92209 0.91083 0.83894 0.95098 0.92761 0.91911 0.98631 0.93988 0.94015 0.97288 0.92856 0.91076 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 9.38 71.98 0.67 -2.48 16 2 C 0.12 2.18 3.39 30.59 0.10 2.28 16 3 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 4 O -0.58 -10.90 12.37 -148.98 -1.84 -12.75 16 5 C 0.09 1.95 2.26 44.91 0.10 2.05 16 6 H 0.09 1.98 7.27 -2.38 -0.02 1.96 16 7 C -0.17 -3.87 9.06 71.98 0.65 -3.22 16 8 N -0.67 -18.68 5.17 -469.31 -2.43 -21.11 16 9 C 0.11 3.60 2.25 44.94 0.10 3.70 16 10 C -0.13 -4.94 5.34 30.67 0.16 -4.78 16 11 C 0.19 9.30 5.26 86.36 0.45 9.75 16 12 N -0.61 -31.82 2.95 -699.09 -2.06 -33.88 16 13 C -0.27 -15.48 9.51 84.04 0.80 -14.68 16 14 H 0.06 3.37 7.87 -2.91 -0.02 3.34 16 15 C -0.04 -2.45 4.91 84.86 0.42 -2.03 16 16 N -0.93 -56.64 11.62 21.65 0.25 -56.39 16 17 Si 0.97 45.66 29.58 68.60 2.03 47.69 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 C 0.14 6.13 6.51 86.36 0.56 6.70 16 22 C -0.10 -3.55 5.59 30.67 0.17 -3.38 16 23 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 1.34 7.60 -2.39 -0.02 1.32 16 26 H 0.39 4.08 9.08 -74.06 -0.67 3.41 16 27 H 0.04 1.03 7.09 -2.39 -0.02 1.01 16 28 H 0.06 1.38 7.59 -2.39 -0.02 1.36 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.34 9.79 8.01 -89.69 -0.72 9.07 16 31 H 0.03 1.10 6.78 -2.39 -0.02 1.08 16 32 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.06 2.20 8.10 -2.39 -0.02 2.19 16 34 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 35 H 0.04 2.35 6.54 -2.39 -0.02 2.33 16 36 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 37 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 38 H 0.05 2.28 7.94 -2.39 -0.02 2.26 16 39 H 0.07 2.15 7.51 -2.39 -0.02 2.13 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -65.07 311.34 -0.23 -65.30 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -0.38 Total: 17.22 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 4.20 Total: -6.08 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -4.24 Total: -111.38 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -1.84 Total: -12.75 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -65.07 -0.23 -65.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331959617.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.580 kcal (2) G-P(sol) polarization free energy of solvation -65.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds