Wall clock time and date at job start Sun Mar 29 2020 22:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 N 1.46298 * 113.99843 * 2 1 4 4 C 1.46847 * 110.99811 * 239.99650 * 3 2 1 5 5 C 1.53034 * 109.51345 * 185.84709 * 4 3 2 6 6 C 1.53123 * 109.27992 * 300.80438 * 5 4 3 7 7 C 1.50693 * 109.57574 * 177.60215 * 6 5 4 8 8 O 1.21284 * 120.00454 * 240.29824 * 7 6 5 9 9 N 1.34782 * 120.00294 * 60.30002 * 7 6 5 10 10 C 1.46500 * 120.00310 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.46756 * 179.97438 * 10 9 7 12 12 H 1.07991 * 120.00716 * 359.97438 * 11 10 9 13 13 C 1.37886 * 119.99608 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99825 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99822 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47557 * 89.99658 * 15 13 11 17 17 H 1.48504 * 109.46753 * 209.99552 * 15 13 11 18 18 H 1.48499 * 109.46914 * 329.99285 * 15 13 11 19 19 C 1.53127 * 109.15019 * 57.67185 * 6 5 4 20 20 C 1.46843 * 110.99993 * 4.20907 * 3 2 1 21 21 H 1.08992 * 109.46920 * 60.00045 * 1 2 3 22 22 H 1.09007 * 109.46914 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47009 * 300.00090 * 1 2 3 24 24 H 1.09002 * 109.46481 * 305.85861 * 4 3 2 25 25 H 1.08994 * 109.46283 * 65.83715 * 4 3 2 26 26 H 1.08997 * 109.50952 * 60.75924 * 5 4 3 27 27 H 1.08998 * 109.50459 * 180.87821 * 5 4 3 28 28 H 1.09003 * 109.53012 * 297.76758 * 6 5 4 29 29 H 0.96996 * 119.99351 * 359.97438 * 9 7 6 30 30 H 1.09002 * 109.46943 * 299.99829 * 10 9 7 31 31 H 1.09000 * 109.47163 * 59.99517 * 10 9 7 32 32 H 0.97004 * 120.00052 * 180.02562 * 14 13 11 33 33 H 1.08997 * 109.49981 * 182.39822 * 19 6 5 34 34 H 1.08998 * 109.53089 * 62.30397 * 19 6 5 35 35 H 1.08993 * 109.46313 * 294.17547 * 20 3 2 36 36 H 1.09000 * 109.46480 * 54.15657 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.8643 1.5384 -1.1872 5 6 3.5831 2.8854 -1.0817 6 6 2.5446 4.0053 -0.9722 7 6 3.2453 5.3294 -0.8088 8 8 3.0508 6.0002 0.1826 9 7 4.0883 5.7682 -1.7645 10 6 4.7700 7.0552 -1.6054 11 6 5.6486 7.3096 -2.8031 12 1 5.6950 6.5851 -3.6025 13 6 6.3933 8.4676 -2.8781 14 7 7.1605 8.6894 -3.9230 15 14 6.3136 9.7206 -1.4949 16 1 7.3567 9.4099 -0.4847 17 1 6.5465 11.0803 -2.0448 18 1 4.9742 9.6678 -0.8558 19 6 1.6518 3.7453 0.2443 20 6 0.9891 2.3733 0.1006 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 3.6011 0.7377 -1.2512 25 1 2.2395 1.5292 -2.0802 26 1 4.2187 2.8904 -0.1963 27 1 4.1946 3.0421 -1.9703 28 1 1.9338 4.0254 -1.8748 29 1 4.2442 5.2316 -2.5573 30 1 4.0295 7.8507 -1.5220 31 1 5.3824 7.0330 -0.7040 32 1 7.6847 9.5039 -3.9757 33 1 0.8835 4.5162 0.3032 34 1 2.2566 3.7642 1.1509 35 1 0.3730 2.3600 -0.7984 36 1 0.3639 2.1791 0.9722 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350295153.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:20 Heat of formation + Delta-G solvation = -41.156892 kcal Electronic energy + Delta-G solvation = -17646.109540 eV Core-core repulsion = 14745.959012 eV Total energy + Delta-G solvation = -2900.150528 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.92524 -38.33562 -35.86375 -34.37430 -32.43957 -31.38730 -31.09987 -27.99716 -27.06562 -24.23596 -23.08818 -21.93901 -20.28489 -19.51273 -17.91881 -17.22986 -16.09166 -15.78439 -15.55665 -15.21211 -14.88961 -14.30735 -14.22204 -13.78420 -13.50866 -13.28348 -13.07830 -12.56320 -12.42459 -12.07438 -11.91391 -11.54045 -11.39234 -11.07310 -10.88679 -10.83389 -10.78122 -10.48274 -9.99075 -9.52057 -9.18141 -8.80203 -8.75587 -8.18809 -6.23724 -4.26193 2.46854 3.15437 3.25577 3.32077 3.40170 3.86254 4.17480 4.31517 4.52001 4.73208 4.83851 4.93304 4.96058 5.02915 5.06035 5.11711 5.23258 5.32080 5.35990 5.46725 5.56829 5.62688 5.74372 5.90807 6.08013 6.24357 6.47077 6.78225 6.94015 7.04350 7.18373 7.36472 8.09899 8.47950 8.72162 8.88684 9.36347 10.88193 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.056308 B = 0.004500 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.143337 B = 6220.212141 C = 6558.202953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.243 6.243 3 N -0.329 5.329 4 C 0.032 3.968 5 C -0.105 4.105 6 C -0.115 4.115 7 C 0.506 3.494 8 O -0.556 6.556 9 N -0.704 5.704 10 C 0.219 3.781 11 C -0.544 4.544 12 H 0.079 0.921 13 C 0.078 3.922 14 N -0.892 5.892 15 Si 0.877 3.123 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.261 1.261 19 C -0.091 4.091 20 C 0.006 3.994 21 H 0.041 0.959 22 H 0.091 0.909 23 H 0.051 0.949 24 H 0.093 0.907 25 H 0.044 0.956 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.396 0.604 30 H 0.025 0.975 31 H 0.021 0.979 32 H 0.268 0.732 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.048 0.952 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.459 -14.506 5.024 19.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.248 6.248 3 N -0.097 5.097 4 C -0.097 4.097 5 C -0.144 4.144 6 C -0.136 4.136 7 C 0.291 3.709 8 O -0.436 6.436 9 N -0.352 5.352 10 C 0.097 3.903 11 C -0.582 4.582 12 H 0.097 0.903 13 C -0.126 4.126 14 N -0.529 5.529 15 Si 0.703 3.297 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.185 1.185 19 C -0.129 4.129 20 C -0.122 4.122 21 H 0.060 0.940 22 H 0.109 0.891 23 H 0.070 0.930 24 H 0.111 0.889 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.111 0.889 29 H 0.230 0.770 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.033 -14.028 6.042 19.444 hybrid contribution -0.613 0.630 -0.703 1.126 sum -12.646 -13.398 5.339 19.182 Atomic orbital electron populations 1.23051 0.83522 1.03062 1.00257 1.91217 1.18409 1.18438 1.96723 1.69434 1.13194 0.90551 1.36501 1.22612 0.97037 0.98835 0.91187 1.21598 0.97344 0.90994 1.04426 1.21463 0.97807 0.93772 1.00590 1.20329 0.80060 0.86998 0.83515 1.90652 1.64432 1.58387 1.30087 1.46203 1.44025 1.23284 1.21668 1.19502 0.92289 0.80773 0.97703 1.21087 1.25867 1.06690 1.04584 0.90267 1.24801 0.94305 0.97687 0.95826 1.69879 1.27410 1.26739 1.28899 0.86812 0.79707 0.80752 0.82392 1.19802 1.20892 1.18536 1.21363 0.99305 0.93695 0.98581 1.22992 0.94886 0.92425 1.01934 0.94010 0.89108 0.92999 0.88878 0.93757 0.89797 0.89480 0.88944 0.77035 0.95734 0.96109 0.92238 0.89860 0.89614 0.93411 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.98 101.05 1.01 1.00 16 2 O -0.24 -2.93 11.64 -13.92 -0.16 -3.09 16 3 N -0.33 -3.93 5.71 -113.82 -0.65 -4.58 16 4 C 0.03 0.34 5.99 -3.84 -0.02 0.32 16 5 C -0.11 -1.23 5.26 -26.65 -0.14 -1.37 16 6 C -0.11 -1.50 2.59 -91.65 -0.24 -1.74 16 7 C 0.51 9.28 7.16 -10.99 -0.08 9.20 16 8 O -0.56 -12.32 15.98 5.55 0.09 -12.23 16 9 N -0.70 -13.85 5.46 -61.47 -0.34 -14.18 16 10 C 0.22 5.34 4.50 -5.19 -0.02 5.31 16 11 C -0.54 -14.78 9.83 -34.44 -0.34 -15.11 16 12 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 13 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 14 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 15 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 19 C -0.09 -1.12 4.68 -26.64 -0.12 -1.25 16 20 C 0.01 0.06 4.47 -3.83 -0.02 0.04 16 21 H 0.04 0.32 7.09 -51.93 -0.37 -0.05 16 22 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.39 6.61 -51.93 -0.34 0.05 16 24 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.09 0.93 7.67 -51.93 -0.40 0.54 16 28 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.40 6.81 7.81 -40.82 -0.32 6.50 16 30 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 31 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.20 8.04 -51.93 -0.42 0.78 16 35 H 0.05 0.45 7.12 -51.93 -0.37 0.08 16 36 H 0.09 0.85 6.57 -51.93 -0.34 0.51 16 LS Contribution 291.58 15.07 4.39 4.39 Total: -1.00 -32.16 291.58 -6.07 -38.23 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.44 Total: 1.85 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -0.07 Total: -1.51 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -0.21 Total: -44.31 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.07 Total: -15.32 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.16 -6.07 -38.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350295153.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.925 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds