Wall clock time and date at job start Sun Mar 29 2020 22:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 N 1.46298 * 113.99843 * 2 1 4 4 C 1.46847 * 110.99811 * 239.99650 * 3 2 1 5 5 C 1.53034 * 109.51345 * 185.84709 * 4 3 2 6 6 C 1.53123 * 109.27992 * 300.80438 * 5 4 3 7 7 C 1.50693 * 109.57574 * 177.60215 * 6 5 4 8 8 O 1.21284 * 120.00454 * 240.29824 * 7 6 5 9 9 N 1.34782 * 120.00294 * 60.30002 * 7 6 5 10 10 C 1.46500 * 120.00310 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.46756 * 179.97438 * 10 9 7 12 12 H 1.07991 * 120.00716 * 359.97438 * 11 10 9 13 13 C 1.37886 * 119.99608 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99825 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99822 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47557 * 89.99658 * 15 13 11 17 17 H 1.48504 * 109.46753 * 209.99552 * 15 13 11 18 18 H 1.48499 * 109.46914 * 329.99285 * 15 13 11 19 19 C 1.53127 * 109.15019 * 57.67185 * 6 5 4 20 20 C 1.46843 * 110.99993 * 4.20907 * 3 2 1 21 21 H 1.08992 * 109.46920 * 60.00045 * 1 2 3 22 22 H 1.09007 * 109.46914 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47009 * 300.00090 * 1 2 3 24 24 H 1.09002 * 109.46481 * 305.85861 * 4 3 2 25 25 H 1.08994 * 109.46283 * 65.83715 * 4 3 2 26 26 H 1.08997 * 109.50952 * 60.75924 * 5 4 3 27 27 H 1.08998 * 109.50459 * 180.87821 * 5 4 3 28 28 H 1.09003 * 109.53012 * 297.76758 * 6 5 4 29 29 H 0.96996 * 119.99351 * 359.97438 * 9 7 6 30 30 H 1.09002 * 109.46943 * 299.99829 * 10 9 7 31 31 H 1.09000 * 109.47163 * 59.99517 * 10 9 7 32 32 H 0.97004 * 120.00052 * 180.02562 * 14 13 11 33 33 H 1.08997 * 109.49981 * 182.39822 * 19 6 5 34 34 H 1.08998 * 109.53089 * 62.30397 * 19 6 5 35 35 H 1.08993 * 109.46313 * 294.17547 * 20 3 2 36 36 H 1.09000 * 109.46480 * 54.15657 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.8643 1.5384 -1.1872 5 6 3.5831 2.8854 -1.0817 6 6 2.5446 4.0053 -0.9722 7 6 3.2453 5.3294 -0.8088 8 8 3.0508 6.0002 0.1826 9 7 4.0883 5.7682 -1.7645 10 6 4.7700 7.0552 -1.6054 11 6 5.6486 7.3096 -2.8031 12 1 5.6950 6.5851 -3.6025 13 6 6.3933 8.4676 -2.8781 14 7 7.1605 8.6894 -3.9230 15 14 6.3136 9.7206 -1.4949 16 1 7.3567 9.4099 -0.4847 17 1 6.5465 11.0803 -2.0448 18 1 4.9742 9.6678 -0.8558 19 6 1.6518 3.7453 0.2443 20 6 0.9891 2.3733 0.1006 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 3.6011 0.7377 -1.2512 25 1 2.2395 1.5292 -2.0802 26 1 4.2187 2.8904 -0.1963 27 1 4.1946 3.0421 -1.9703 28 1 1.9338 4.0254 -1.8748 29 1 4.2442 5.2316 -2.5573 30 1 4.0295 7.8507 -1.5220 31 1 5.3824 7.0330 -0.7040 32 1 7.6847 9.5039 -3.9757 33 1 0.8835 4.5162 0.3032 34 1 2.2566 3.7642 1.1509 35 1 0.3730 2.3600 -0.7984 36 1 0.3639 2.1791 0.9722 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350295153.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:20 Heat of formation + Delta-G solvation = -65.757163 kcal Electronic energy + Delta-G solvation = -17647.176288 eV Core-core repulsion = 14745.959012 eV Total energy + Delta-G solvation = -2901.217276 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.18681 -39.46147 -36.82690 -36.18099 -34.43251 -32.40635 -32.06420 -29.83641 -27.82532 -25.51742 -23.97393 -23.68373 -21.63852 -20.67899 -19.23555 -18.59330 -17.69312 -17.06357 -16.67448 -16.31511 -16.17766 -15.97443 -15.13583 -15.02138 -14.90307 -14.46298 -14.24732 -14.14738 -13.89224 -13.38390 -13.10522 -12.77219 -12.71031 -12.44311 -12.28582 -11.94932 -11.84201 -11.73560 -11.65282 -11.33504 -10.92285 -10.71423 -9.93922 -9.55272 -8.40326 -6.47239 1.32531 1.34996 1.47006 1.65389 1.69704 2.27619 2.42472 2.95219 3.35081 3.57876 3.76673 3.80432 4.00492 4.14550 4.25042 4.35545 4.43103 4.49397 4.53261 4.63586 4.68922 4.77733 4.82162 4.86434 4.98302 5.02737 5.11524 5.23486 5.27281 5.51347 5.65151 6.07884 6.17609 6.53877 6.82535 7.15200 7.38935 8.74326 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.056308 B = 0.004500 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.143337 B = 6220.212141 C = 6558.202953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.263 6.263 3 N -0.350 5.350 4 C 0.037 3.963 5 C -0.100 4.100 6 C -0.103 4.103 7 C 0.506 3.494 8 O -0.595 6.595 9 N -0.703 5.703 10 C 0.230 3.770 11 C -0.546 4.546 12 H 0.061 0.939 13 C 0.027 3.973 14 N -0.931 5.931 15 Si 0.937 3.063 16 H -0.266 1.266 17 H -0.273 1.273 18 H -0.261 1.261 19 C -0.088 4.088 20 C 0.013 3.987 21 H 0.051 0.949 22 H 0.108 0.892 23 H 0.058 0.942 24 H 0.096 0.904 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.409 0.591 30 H 0.012 0.988 31 H 0.010 0.990 32 H 0.272 0.728 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.803 -15.428 5.292 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 O -0.268 6.268 3 N -0.118 5.118 4 C -0.092 4.092 5 C -0.139 4.139 6 C -0.124 4.124 7 C 0.293 3.707 8 O -0.477 6.477 9 N -0.352 5.352 10 C 0.107 3.893 11 C -0.584 4.584 12 H 0.079 0.921 13 C -0.174 4.174 14 N -0.570 5.570 15 Si 0.760 3.240 16 H -0.191 1.191 17 H -0.198 1.198 18 H -0.185 1.185 19 C -0.126 4.126 20 C -0.115 4.115 21 H 0.069 0.931 22 H 0.126 0.874 23 H 0.077 0.923 24 H 0.114 0.886 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.116 0.884 28 H 0.138 0.862 29 H 0.245 0.755 30 H 0.030 0.970 31 H 0.028 0.972 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.391 -14.985 6.298 21.060 hybrid contribution -0.231 0.841 -0.802 1.185 sum -13.622 -14.143 5.495 20.391 Atomic orbital electron populations 1.23264 0.81727 1.04507 1.01009 1.91182 1.20499 1.18177 1.96892 1.69350 1.14100 0.91021 1.37285 1.22547 0.97185 0.97940 0.91495 1.21560 0.96925 0.91138 1.04229 1.21464 0.98012 0.90703 1.02211 1.21213 0.79050 0.88264 0.82127 1.90632 1.65513 1.59988 1.31536 1.46054 1.44274 1.22076 1.22843 1.19103 0.91612 0.82754 0.95876 1.21293 1.25992 1.06234 1.04892 0.92134 1.25596 0.94066 0.99723 0.97997 1.69978 1.28523 1.27718 1.30742 0.85868 0.79708 0.78744 0.79633 1.19065 1.19839 1.18490 1.21308 0.98922 0.95218 0.97173 1.22934 0.94586 0.90619 1.03347 0.93093 0.87407 0.92306 0.88574 0.92344 0.91399 0.88398 0.86224 0.75548 0.96962 0.97164 0.91852 0.89785 0.91752 0.91679 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 9.98 113.37 1.13 1.03 16 2 O -0.26 -5.72 11.64 -50.15 -0.58 -6.31 16 3 N -0.35 -7.59 5.71 -514.02 -2.94 -10.53 16 4 C 0.04 0.71 5.99 86.32 0.52 1.22 16 5 C -0.10 -2.17 5.26 30.65 0.16 -2.01 16 6 C -0.10 -2.50 2.59 -11.46 -0.03 -2.53 16 7 C 0.51 18.12 7.16 87.65 0.63 18.75 16 8 O -0.60 -26.24 15.98 -3.04 -0.05 -26.29 16 9 N -0.70 -27.21 5.46 -466.79 -2.55 -29.76 16 10 C 0.23 11.17 4.50 85.63 0.38 11.56 16 11 C -0.55 -29.81 9.83 25.60 0.25 -29.56 16 12 H 0.06 3.45 7.84 -2.92 -0.02 3.43 16 13 C 0.03 1.49 5.47 84.66 0.46 1.95 16 14 N -0.93 -55.25 13.96 21.45 0.30 -54.95 16 15 Si 0.94 43.87 27.47 68.60 1.88 45.76 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.26 -12.10 6.54 99.48 0.65 -11.45 16 19 C -0.09 -2.02 4.68 30.65 0.14 -1.88 16 20 C 0.01 0.24 4.47 86.33 0.39 0.62 16 21 H 0.05 0.61 7.09 -2.39 -0.02 0.59 16 22 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 23 H 0.06 0.72 6.61 -2.38 -0.02 0.71 16 24 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.10 1.90 7.67 -2.39 -0.02 1.88 16 28 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.41 13.66 7.81 -92.71 -0.72 12.93 16 30 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 31 H 0.01 0.53 7.57 -2.39 -0.02 0.51 16 32 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 1.76 8.04 -2.39 -0.02 1.75 16 35 H 0.07 0.97 7.12 -2.39 -0.02 0.96 16 36 H 0.10 1.64 6.57 -2.39 -0.02 1.63 16 Total: -1.00 -68.70 291.58 0.40 -68.30 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.29 Total: 14.62 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 4.04 Total: -0.84 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -5.18 Total: -95.24 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.63 Total: -32.60 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.76 kcal Total: -68.70 0.40 -68.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350295153.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.545 kcal (2) G-P(sol) polarization free energy of solvation -68.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds