Wall clock time and date at job start Sun Mar 29 2020 23:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86798 * 119.99820 * 2 1 4 4 H 1.48506 * 109.47246 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47510 * 299.99592 * 3 2 1 6 6 H 1.48507 * 109.47309 * 59.99912 * 3 2 1 7 7 C 1.40045 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99592 * 180.02562 * 7 2 1 9 9 C 1.46375 * 120.00118 * 359.97438 * 7 2 1 10 10 O 1.21684 * 120.00093 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99969 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.46840 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.46912 * 180.02562 * 13 12 11 15 15 N 1.30071 * 126.20740 * 90.02386 * 14 13 12 16 16 N 1.28652 * 109.56328 * 179.97438 * 15 14 13 17 17 C 1.31149 * 109.31072 * 0.02562 * 16 15 14 18 18 S 1.76202 * 126.38282 * 180.02562 * 17 16 15 19 19 O 1.34639 * 107.23540 * 359.73743 * 17 16 15 20 20 H 0.97000 * 120.00256 * 0.02562 * 1 2 3 21 21 H 0.97005 * 119.99680 * 0.02562 * 11 9 7 22 22 H 1.09001 * 109.46813 * 60.00258 * 12 11 9 23 23 H 1.08992 * 109.47397 * 300.00319 * 12 11 9 24 24 H 1.09002 * 109.47398 * 300.00326 * 13 12 11 25 25 H 1.09001 * 109.47194 * 60.00507 * 13 12 11 26 26 H 1.40999 * 100.00179 * 89.97270 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3465 0.0006 5 1 1.8820 2.3965 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0069 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0582 -2.4805 0.0017 11 7 1.9490 -3.6477 0.0017 12 6 1.2165 -4.9164 0.0022 13 6 2.2108 -6.0793 0.0015 14 6 1.4573 -7.3844 0.0014 15 7 1.0730 -8.0497 -1.0481 16 7 0.4572 -9.1175 -0.6797 17 6 0.4266 -9.1704 0.6304 18 16 -0.3051 -10.4403 1.6084 19 8 1.0641 -8.0767 1.0888 20 1 -0.4850 0.8400 -0.0004 21 1 2.9190 -3.6476 0.0013 22 1 0.5895 -4.9743 -0.8875 23 1 0.5902 -4.9740 0.8924 24 1 2.8368 -6.0215 -0.8890 25 1 2.8381 -6.0216 0.8910 26 1 0.7962 -11.3103 1.7439 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556283723.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:21 Heat of formation + Delta-G solvation = 6.124275 kcal Electronic energy + Delta-G solvation = -14464.649527 eV Core-core repulsion = 11672.210035 eV Total energy + Delta-G solvation = -2792.439492 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.046 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.34821 -37.53385 -36.41424 -34.79639 -32.60816 -31.90155 -29.30274 -26.42846 -24.38024 -23.88771 -21.93156 -19.85025 -19.19719 -17.74439 -17.41350 -16.78255 -15.57592 -15.50936 -15.05456 -14.54775 -14.29864 -13.65801 -12.67849 -12.59443 -12.48663 -12.23450 -12.06344 -11.73557 -11.42280 -11.20704 -11.15760 -10.84721 -10.52929 -10.24418 -9.80663 -8.92760 -8.90608 -7.70783 -7.66945 -6.23977 -4.70008 0.24256 0.55260 1.74838 2.19675 2.51776 3.10820 3.19011 3.23272 3.92377 4.09341 4.53223 4.60846 4.70412 4.85098 4.98519 5.17200 5.28057 5.53726 5.72405 6.25082 6.31558 7.38932 7.80876 7.92715 7.93992 8.24901 8.97313 9.41795 10.53389 10.71249 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.067344 B = 0.003829 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.676171 B = 7311.134239 C = 7444.982965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.086 3.914 3 Si 0.910 3.090 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.070 0.930 9 C 0.554 3.446 10 O -0.578 6.578 11 N -0.766 5.766 12 C 0.137 3.863 13 C -0.041 4.041 14 C 0.211 3.789 15 N -0.287 5.287 16 N -0.222 5.222 17 C 0.113 3.887 18 S 0.044 5.956 19 O -0.206 6.206 20 H 0.269 0.731 21 H 0.383 0.617 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.120 0.880 25 H 0.105 0.895 26 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.164 -16.057 3.672 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.134 4.134 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.088 0.912 9 C 0.358 3.642 10 O -0.460 6.460 11 N -0.423 5.423 12 C 0.011 3.989 13 C -0.080 4.080 14 C -0.001 4.001 15 N -0.136 5.136 16 N -0.074 5.074 17 C -0.206 4.206 18 S 0.194 5.806 19 O -0.085 6.085 20 H 0.080 0.920 21 H 0.214 0.786 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.138 0.862 25 H 0.123 0.877 26 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.313 -16.787 2.950 17.363 hybrid contribution 2.211 1.165 0.752 2.610 sum 5.524 -15.622 3.702 16.978 Atomic orbital electron populations 1.70028 1.07102 1.27323 1.35068 1.25731 0.94650 1.00410 0.92608 0.86286 0.80423 0.81608 0.78250 1.18746 1.20123 1.20154 1.20888 0.93647 0.89132 1.54369 0.91199 1.18274 0.87250 0.82238 0.76418 1.90619 1.14108 1.86615 1.54690 1.46124 1.08622 1.04244 1.83349 1.20777 0.93193 0.82820 1.02123 1.20648 0.97270 0.83679 1.06437 1.28244 0.95706 0.96901 0.79296 1.74418 1.12435 1.01443 1.25271 1.75022 1.11517 1.12543 1.08364 1.28921 1.03684 0.93903 0.94100 1.87362 1.14643 1.13723 1.64896 1.85213 1.55327 1.29973 1.37989 0.92043 0.78562 0.92092 0.92603 0.86222 0.87672 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.81 11.83 55.55 0.66 -22.15 15 2 C 0.09 2.36 5.50 -17.37 -0.10 2.27 15 3 Si 0.91 19.74 29.56 -169.99 -5.02 14.72 15 4 H -0.26 -5.48 7.11 56.52 0.40 -5.08 15 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 7 C -0.54 -14.95 9.54 -35.63 -0.34 -15.29 15 8 H 0.07 1.74 7.85 -52.48 -0.41 1.33 15 9 C 0.55 15.39 7.75 -12.99 -0.10 15.29 15 10 O -0.58 -18.62 15.02 5.20 0.08 -18.54 15 11 N -0.77 -16.05 5.55 -61.72 -0.34 -16.39 15 12 C 0.14 2.48 5.66 -4.04 -0.02 2.46 15 13 C -0.04 -0.52 5.96 -27.88 -0.17 -0.68 15 14 C 0.21 3.01 7.73 -13.02 -0.10 2.91 15 15 N -0.29 -4.61 12.20 32.59 0.40 -4.21 15 16 N -0.22 -3.42 12.27 30.29 0.37 -3.05 15 17 C 0.11 1.49 8.83 52.47 0.46 1.96 15 18 S 0.04 0.39 26.28 -107.50 -2.83 -2.43 15 19 O -0.21 -2.87 10.90 3.52 0.04 -2.83 15 20 H 0.27 7.22 8.29 -40.82 -0.34 6.89 15 21 H 0.38 6.63 8.45 -40.82 -0.35 6.29 15 22 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 24 H 0.12 1.30 8.14 -51.93 -0.42 0.88 15 25 H 0.10 1.07 8.14 -51.93 -0.42 0.65 15 26 H 0.11 0.64 9.55 96.90 0.93 1.57 15 LS Contribution 262.60 15.07 3.96 3.96 Total: -1.00 -35.30 262.60 -3.71 -39.01 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -0.66 Total: 3.00 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -0.36 Total: 8.92 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 1.08 Total: -45.80 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: 0.12 Total: -21.37 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -2.83 Total: -2.43 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -35.30 -3.71 -39.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556283723.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.131 kcal (2) G-P(sol) polarization free energy of solvation -35.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds