Wall clock time and date at job start Sun Mar 29 2020 23:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86798 * 119.99820 * 2 1 4 4 H 1.48506 * 109.47246 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47510 * 299.99592 * 3 2 1 6 6 H 1.48507 * 109.47309 * 59.99912 * 3 2 1 7 7 C 1.40045 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99592 * 180.02562 * 7 2 1 9 9 C 1.46375 * 120.00118 * 359.97438 * 7 2 1 10 10 O 1.21684 * 120.00093 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99969 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.46840 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.46912 * 180.02562 * 13 12 11 15 15 N 1.30071 * 126.20740 * 90.02386 * 14 13 12 16 16 N 1.28652 * 109.56328 * 179.97438 * 15 14 13 17 17 C 1.31149 * 109.31072 * 0.02562 * 16 15 14 18 18 S 1.76202 * 126.38282 * 180.02562 * 17 16 15 19 19 O 1.34639 * 107.23540 * 359.73743 * 17 16 15 20 20 H 0.97000 * 120.00256 * 0.02562 * 1 2 3 21 21 H 0.97005 * 119.99680 * 0.02562 * 11 9 7 22 22 H 1.09001 * 109.46813 * 60.00258 * 12 11 9 23 23 H 1.08992 * 109.47397 * 300.00319 * 12 11 9 24 24 H 1.09002 * 109.47398 * 300.00326 * 13 12 11 25 25 H 1.09001 * 109.47194 * 60.00507 * 13 12 11 26 26 H 1.40999 * 100.00179 * 89.97270 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3465 0.0006 5 1 1.8820 2.3965 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0069 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0582 -2.4805 0.0017 11 7 1.9490 -3.6477 0.0017 12 6 1.2165 -4.9164 0.0022 13 6 2.2108 -6.0793 0.0015 14 6 1.4573 -7.3844 0.0014 15 7 1.0730 -8.0497 -1.0481 16 7 0.4572 -9.1175 -0.6797 17 6 0.4266 -9.1704 0.6304 18 16 -0.3051 -10.4403 1.6084 19 8 1.0641 -8.0767 1.0888 20 1 -0.4850 0.8400 -0.0004 21 1 2.9190 -3.6476 0.0013 22 1 0.5895 -4.9743 -0.8875 23 1 0.5902 -4.9740 0.8924 24 1 2.8368 -6.0215 -0.8890 25 1 2.8381 -6.0216 0.8910 26 1 0.7962 -11.3103 1.7439 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556283723.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:21 Heat of formation + Delta-G solvation = -26.233219 kcal Electronic energy + Delta-G solvation = -14466.052653 eV Core-core repulsion = 11672.210035 eV Total energy + Delta-G solvation = -2793.842618 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.046 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.43235 -39.50018 -37.51561 -36.39755 -34.61591 -33.50131 -30.70410 -28.36486 -25.60001 -25.19110 -23.16521 -21.81928 -20.12798 -19.28596 -18.82102 -17.91763 -17.46017 -16.59775 -16.49642 -15.97098 -15.89529 -15.29927 -14.41115 -14.23194 -13.78976 -13.38499 -13.25831 -13.07595 -12.92533 -12.77663 -12.60918 -12.53887 -12.29879 -11.95579 -10.94389 -10.88362 -9.91299 -9.63971 -9.57513 -8.29361 -6.85399 -0.61018 -0.46450 0.83052 1.28298 1.42922 1.43479 1.54850 1.61646 2.26083 2.46985 2.80004 3.25476 3.56570 3.60324 3.72187 3.75948 4.03844 4.14026 4.45460 4.80633 4.85206 5.34111 5.86377 6.14452 6.26206 6.82926 6.87538 7.53219 8.47830 8.67144 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.067344 B = 0.003829 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.676171 B = 7311.134239 C = 7444.982965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.025 3.975 3 Si 1.001 2.999 4 H -0.243 1.243 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.568 4.568 8 H 0.095 0.905 9 C 0.536 3.464 10 O -0.635 6.635 11 N -0.749 5.749 12 C 0.141 3.859 13 C -0.022 4.022 14 C 0.207 3.793 15 N -0.312 5.312 16 N -0.254 5.254 17 C 0.121 3.879 18 S 0.055 5.945 19 O -0.210 6.210 20 H 0.274 0.726 21 H 0.404 0.596 22 H 0.034 0.966 23 H 0.037 0.963 24 H 0.143 0.857 25 H 0.139 0.861 26 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.464 -16.336 4.384 18.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.165 1.165 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.604 4.604 8 H 0.113 0.887 9 C 0.340 3.660 10 O -0.522 6.522 11 N -0.405 5.405 12 C 0.015 3.985 13 C -0.061 4.061 14 C -0.006 4.006 15 N -0.160 5.160 16 N -0.105 5.105 17 C -0.198 4.198 18 S 0.203 5.797 19 O -0.089 6.089 20 H 0.084 0.916 21 H 0.239 0.761 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.161 0.839 25 H 0.157 0.843 26 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.676 -17.126 3.647 18.407 hybrid contribution 1.455 1.066 0.590 1.898 sum 7.131 -16.060 4.236 18.076 Atomic orbital electron populations 1.70205 1.09682 1.28948 1.36536 1.27040 0.95519 1.05211 0.91231 0.84927 0.79513 0.75228 0.78336 1.16535 1.19644 1.19556 1.21470 0.95009 0.89624 1.54312 0.88679 1.18690 0.86821 0.84373 0.76078 1.90575 1.16535 1.87896 1.57180 1.45636 1.09647 1.03740 1.81508 1.20698 0.94146 0.83629 1.00002 1.20536 0.95739 0.80485 1.09328 1.28369 0.95819 0.97275 0.79159 1.74341 1.13139 1.02149 1.26401 1.74978 1.12926 1.12973 1.09638 1.29664 1.01869 0.94108 0.94144 1.87376 1.15940 1.12893 1.63465 1.85234 1.55467 1.30296 1.37889 0.91592 0.76085 0.94740 0.94451 0.83892 0.84293 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.26 11.83 21.83 0.26 -50.00 15 2 C 0.02 1.36 5.50 85.30 0.47 1.83 15 3 Si 1.00 39.93 29.56 68.60 2.03 41.96 15 4 H -0.24 -8.76 7.11 99.48 0.71 -8.06 15 5 H -0.27 -10.54 7.11 99.48 0.71 -9.84 15 6 H -0.27 -10.46 7.11 99.48 0.71 -9.75 15 7 C -0.57 -31.05 9.54 24.83 0.24 -30.82 15 8 H 0.10 4.54 7.85 -2.91 -0.02 4.52 15 9 C 0.54 30.29 7.75 86.36 0.67 30.96 15 10 O -0.63 -42.53 15.02 -4.30 -0.06 -42.60 15 11 N -0.75 -31.04 5.55 -467.42 -2.59 -33.64 15 12 C 0.14 5.14 5.66 86.38 0.49 5.63 15 13 C -0.02 -0.52 5.96 29.85 0.18 -0.34 15 14 C 0.21 5.71 7.73 88.37 0.68 6.40 15 15 N -0.31 -9.94 12.20 -165.25 -2.02 -11.96 15 16 N -0.25 -7.73 12.27 -172.07 -2.11 -9.85 15 17 C 0.12 3.07 8.83 130.34 1.15 4.22 15 18 S 0.05 0.86 26.28 -56.49 -1.48 -0.62 15 19 O -0.21 -5.58 10.90 -10.32 -0.11 -5.70 15 20 H 0.27 15.12 8.29 -92.71 -0.77 14.35 15 21 H 0.40 13.21 8.45 -92.70 -0.78 12.42 15 22 H 0.03 1.43 8.14 -2.39 -0.02 1.41 15 23 H 0.04 1.49 8.14 -2.39 -0.02 1.47 15 24 H 0.14 2.72 8.14 -2.39 -0.02 2.70 15 25 H 0.14 2.35 8.14 -2.39 -0.02 2.33 15 26 H 0.15 1.23 9.55 73.80 0.70 1.94 15 Total: -1.00 -79.96 262.60 -1.05 -81.01 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.17 Total: 13.51 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 3.88 Total: 17.88 kcal Atomic # 7 Polarization: -98.98 SS G_CDS: -6.46 Total: -105.44 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -0.18 Total: -48.29 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -1.48 Total: -0.62 kcal Total: -79.96 -1.05 -81.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556283723.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.780 kcal (2) G-P(sol) polarization free energy of solvation -79.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds