Wall clock time and date at job start Sun Mar 29 2020 23:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99887 * 2 1 4 4 H 1.48494 * 109.46900 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46865 * 299.99842 * 3 2 1 6 6 H 1.48503 * 109.46942 * 59.99388 * 3 2 1 7 7 C 1.37879 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00052 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99898 * 0.02562 * 7 2 1 10 10 S 1.81398 * 109.47081 * 179.97438 * 9 7 2 11 11 C 1.81395 * 103.00290 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47668 * 179.97438 * 11 10 9 13 13 O 1.21233 * 119.99444 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00373 * 180.27971 * 12 11 10 15 15 C 1.46758 * 124.34897 * 179.45238 * 14 12 11 16 16 C 1.54665 * 105.37961 * 162.85231 * 15 14 12 17 17 C 1.54628 * 101.68557 * 25.76529 * 16 15 14 18 18 C 1.34420 * 124.34741 * 359.74571 * 14 12 11 19 19 O 1.21224 * 124.94407 * 0.43444 * 18 14 12 20 20 H 0.96989 * 120.00020 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47062 * 59.99155 * 9 7 2 22 22 H 1.08996 * 109.46909 * 299.99264 * 9 7 2 23 23 H 1.09009 * 109.46558 * 59.99793 * 11 10 9 24 24 H 1.08998 * 109.46884 * 300.00419 * 11 10 9 25 25 H 1.09003 * 110.24610 * 281.97930 * 15 14 12 26 26 H 1.08998 * 110.24898 * 43.98014 * 15 14 12 27 27 H 1.09003 * 111.18989 * 267.58914 * 16 15 14 28 28 H 1.08997 * 110.82297 * 143.77786 * 16 15 14 29 29 H 1.09003 * 110.48189 * 216.31146 * 17 16 15 30 30 H 1.08999 * 110.59798 * 93.72321 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4300 -3.8779 0.0005 11 6 1.3518 -5.3367 0.0013 12 6 2.1957 -6.5852 0.0008 13 8 3.4050 -6.4993 0.0004 14 7 1.6062 -7.7971 -0.0045 15 6 2.3336 -9.0717 -0.0171 16 6 1.3016 -10.1373 0.4207 17 6 -0.0305 -9.4750 -0.0011 18 6 0.2765 -7.9937 -0.0045 19 8 -0.5557 -7.1122 -0.0074 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6243 -2.5568 0.8903 23 1 0.7223 -5.3236 -0.8885 24 1 0.7229 -5.3232 0.8915 25 1 2.6996 -9.2872 -1.0209 26 1 3.1634 -9.0395 0.6889 27 1 1.3336 -10.2974 1.4984 28 1 1.4592 -11.0728 -0.1160 29 1 -0.8143 -9.7005 0.7221 30 1 -0.3249 -9.8060 -0.9970 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559422451.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:25 Heat of formation + Delta-G solvation = -95.633635 kcal Electronic energy + Delta-G solvation = -14909.665217 eV Core-core repulsion = 12216.353514 eV Total energy + Delta-G solvation = -2693.311702 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 243.072 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.60414 -39.85330 -37.68460 -35.33471 -33.82210 -31.03889 -30.62023 -28.64080 -25.37074 -24.46387 -22.85003 -20.27541 -18.79624 -18.58485 -18.25803 -17.57072 -16.79340 -16.31257 -16.04256 -15.69529 -15.44148 -14.98084 -14.72757 -14.62404 -14.27199 -14.05105 -13.67873 -13.60442 -12.76444 -12.60570 -12.43944 -12.18494 -11.96296 -11.71129 -11.57991 -11.22738 -10.78458 -10.74643 -10.71620 -8.63896 -8.36453 -6.50785 0.38247 0.54689 1.38941 1.39708 1.54158 1.57724 1.63830 1.83154 2.35376 2.97911 2.98428 3.31722 3.59763 3.84837 3.99880 4.11716 4.18975 4.56760 4.58113 4.78215 4.86089 4.87301 4.96264 5.08195 5.17884 5.44781 5.53734 5.82707 6.42094 6.56681 6.62702 7.17580 8.76341 Molecular weight = 243.07amu Principal moments of inertia in cm(-1) A = 0.057115 B = 0.004674 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.118005 B = 5989.607162 C = 6435.814746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.015 3.985 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.085 3.915 10 S -0.262 6.262 11 C -0.104 4.104 12 C 0.549 3.451 13 O -0.504 6.504 14 N -0.579 5.579 15 C 0.080 3.920 16 C -0.111 4.111 17 C -0.141 4.141 18 C 0.506 3.494 19 O -0.530 6.530 20 H 0.272 0.728 21 H 0.017 0.983 22 H 0.017 0.983 23 H 0.111 0.889 24 H 0.111 0.889 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.135 0.865 29 H 0.129 0.871 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.137 -23.785 0.113 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.186 4.186 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.577 4.577 8 H 0.081 0.919 9 C -0.062 4.062 10 S -0.036 6.036 11 C -0.255 4.255 12 C 0.339 3.661 13 O -0.377 6.377 14 N -0.324 5.324 15 C -0.040 4.040 16 C -0.149 4.149 17 C -0.180 4.180 18 C 0.298 3.702 19 O -0.405 6.405 20 H 0.081 0.919 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.129 0.871 24 H 0.129 0.871 25 H 0.119 0.881 26 H 0.109 0.891 27 H 0.116 0.884 28 H 0.154 0.846 29 H 0.147 0.853 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.321 -23.076 0.115 23.114 hybrid contribution -1.230 1.238 -0.015 1.746 sum 0.091 -21.838 0.099 21.838 Atomic orbital electron populations 1.70074 1.07767 1.28690 1.49834 1.25965 0.95931 1.03158 0.93534 0.85146 0.78642 0.77356 0.78376 1.18949 1.19517 1.19527 1.20974 0.93483 0.89922 1.53324 0.91884 1.20861 0.94388 0.92745 0.98250 1.86907 1.18438 1.00192 1.98082 1.23449 1.00782 0.93548 1.07702 1.20023 0.87807 0.84443 0.73863 1.90718 1.14911 1.86882 1.45211 1.47377 1.10486 1.08059 1.66429 1.22790 0.96867 0.79452 1.04878 1.22754 0.89734 0.98055 1.04328 1.22541 1.01454 0.86288 1.07731 1.22597 0.80544 0.94911 0.72112 1.90802 1.51214 1.51486 1.46953 0.91915 0.96494 0.96492 0.87065 0.87107 0.88122 0.89075 0.88353 0.84640 0.85295 0.84343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 2 C 0.02 0.87 5.46 84.65 0.46 1.34 16 3 Si 0.98 45.10 29.54 68.60 2.03 47.12 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.54 -32.40 9.13 25.60 0.23 -32.17 16 8 H 0.06 3.79 7.71 -2.91 -0.02 3.76 16 9 C 0.09 4.87 5.70 71.24 0.41 5.28 16 10 S -0.26 -12.98 20.79 -56.49 -1.17 -14.16 16 11 C -0.10 -4.18 4.69 71.23 0.33 -3.84 16 12 C 0.55 19.05 7.78 87.66 0.68 19.73 16 13 O -0.50 -20.07 16.09 -2.88 -0.05 -20.11 16 14 N -0.58 -13.99 2.99 -751.77 -2.25 -16.24 16 15 C 0.08 1.07 6.86 86.90 0.60 1.66 16 16 C -0.11 -0.48 7.19 31.72 0.23 -0.25 16 17 C -0.14 -1.19 6.86 30.59 0.21 -0.98 16 18 C 0.51 11.33 7.90 87.90 0.69 12.03 16 19 O -0.53 -16.88 15.07 -2.86 -0.04 -16.92 16 20 H 0.27 15.24 8.31 -92.72 -0.77 14.47 16 21 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.11 4.43 7.56 -2.39 -0.02 4.41 16 24 H 0.11 4.42 7.58 -2.39 -0.02 4.40 16 25 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.09 1.31 8.10 -2.39 -0.02 1.29 16 27 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.14 -0.29 8.14 -2.39 -0.02 -0.31 16 29 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -78.04 276.91 3.78 -74.25 By element: Atomic # 1 Polarization: -1.99 SS G_CDS: 1.14 Total: -0.86 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 3.85 Total: 2.79 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: -1.96 Total: -72.12 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -0.09 Total: -37.04 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: -12.98 SS G_CDS: -1.17 Total: -14.16 kcal Total: -78.04 3.78 -74.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559422451.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.381 kcal (2) G-P(sol) polarization free energy of solvation -78.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds