Wall clock time and date at job start Sun Mar 29 2020 22:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.47065 * 2 1 4 4 C 1.46901 * 110.99696 * 219.65153 * 3 2 1 5 5 C 1.52997 * 109.47363 * 77.11259 * 4 3 2 6 6 H 1.08999 * 109.46799 * 54.52763 * 5 4 3 7 7 O 1.42896 * 109.47156 * 294.52806 * 5 4 3 8 8 C 1.50701 * 109.47555 * 174.52868 * 5 4 3 9 9 H 1.08003 * 119.99227 * 359.97438 * 8 5 4 10 10 C 1.37870 * 120.00255 * 180.02562 * 8 5 4 11 11 N 1.31517 * 120.00069 * 359.97438 * 10 8 5 12 12 Si 1.86806 * 120.00103 * 179.97438 * 10 8 5 13 13 H 1.48507 * 109.46935 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47139 * 119.99757 * 12 10 8 15 15 H 1.48498 * 109.47158 * 239.99764 * 12 10 8 16 16 C 1.46899 * 111.00063 * 95.70053 * 3 2 1 17 17 C 1.53116 * 109.52399 * 61.07865 * 16 3 2 18 18 C 1.53043 * 109.27757 * 182.44200 * 17 16 3 19 19 N 1.46847 * 109.52226 * 59.17747 * 18 17 16 20 20 C 1.46844 * 111.19930 * 298.26033 * 19 18 17 21 21 C 1.53033 * 109.52555 * 61.74349 * 20 19 18 22 22 H 1.09003 * 109.46938 * 302.46148 * 1 2 3 23 23 H 1.08994 * 109.46928 * 62.46061 * 1 2 3 24 24 H 1.09002 * 109.47079 * 182.45950 * 1 2 3 25 25 H 1.09001 * 109.46836 * 239.99786 * 2 1 3 26 26 H 1.09006 * 109.46974 * 119.99912 * 2 1 3 27 27 H 1.09002 * 109.47297 * 317.11089 * 4 3 2 28 28 H 1.08997 * 109.47082 * 197.11673 * 4 3 2 29 29 H 0.96700 * 114.00370 * 300.00255 * 7 5 4 30 30 H 0.97002 * 119.99611 * 180.02562 * 11 10 8 31 31 H 1.09000 * 109.52361 * 181.27218 * 16 3 2 32 32 H 1.08999 * 109.50395 * 302.38294 * 17 16 3 33 33 H 1.08998 * 109.50662 * 62.50367 * 17 16 3 34 34 H 1.09003 * 109.46199 * 299.16294 * 18 17 16 35 35 H 1.08997 * 109.46317 * 179.19584 * 18 17 16 36 36 H 1.00901 * 111.00102 * 62.35974 * 19 18 17 37 37 H 1.08995 * 109.46137 * 301.72458 * 20 19 18 38 38 H 1.09005 * 109.45425 * 181.75370 * 20 19 18 39 39 H 1.08994 * 109.50692 * 180.88044 * 21 20 19 40 40 H 1.09001 * 109.50728 * 60.75902 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.1907 1.5293 -0.8752 5 6 2.7349 1.5657 -2.3352 6 1 1.9890 2.3501 -2.4634 7 8 2.1646 0.3038 -2.6878 8 6 3.9186 1.8479 -3.2242 9 1 4.8980 1.9878 -2.7910 10 6 3.7510 1.9286 -4.5903 11 7 2.5583 1.7588 -5.1177 12 14 5.2182 2.2792 -5.6922 13 1 6.4383 2.4298 -4.8589 14 1 5.4033 1.1536 -6.6429 15 1 4.9793 3.5334 -6.4504 16 6 2.3236 1.8360 1.3646 17 6 3.4207 0.9515 1.9634 18 6 3.6900 1.3872 3.4056 19 7 2.4561 1.2679 4.1928 20 6 1.4026 2.1440 3.6648 21 6 1.0650 1.7309 2.2304 22 1 -0.3633 0.5516 0.8671 23 1 -0.3633 0.4751 -0.9112 24 1 -0.3633 -1.0267 0.0441 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8627 0.6842 -0.7253 28 1 3.7124 2.4555 -0.6342 29 1 2.7734 -0.4420 -2.5975 30 1 2.4406 1.8153 -6.0789 31 1 2.6627 2.8715 1.3390 32 1 3.0960 -0.0889 1.9522 33 1 4.3329 1.0550 1.3757 34 1 4.0279 2.4235 3.4149 35 1 4.4607 0.7502 3.8395 36 1 2.1433 0.3093 4.2319 37 1 1.7512 3.1767 3.6728 38 1 0.5119 2.0565 4.2870 39 1 0.2941 2.3913 1.8334 40 1 0.7032 0.7027 2.2233 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577731379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:02 Heat of formation + Delta-G solvation = -47.402801 kcal Electronic energy + Delta-G solvation = -18807.116638 eV Core-core repulsion = 16042.528362 eV Total energy + Delta-G solvation = -2764.588276 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.63301 -36.77512 -34.75666 -32.12480 -31.26513 -30.53354 -29.97567 -27.31101 -24.43810 -23.24899 -22.71875 -21.62557 -20.37722 -19.34277 -16.98302 -16.05885 -15.64576 -14.74326 -14.63966 -14.48916 -14.32721 -14.20167 -13.55341 -13.18296 -12.97956 -12.75463 -12.42103 -12.11402 -11.96648 -11.62039 -11.39143 -11.21117 -11.07846 -10.97277 -10.81380 -10.55049 -10.48913 -10.20878 -10.08309 -9.93138 -8.99993 -8.57523 -8.46786 -8.07679 -7.52727 -5.99631 -4.18026 3.26358 3.34729 3.37656 4.20893 4.34846 4.52189 4.78178 4.97004 5.13814 5.26993 5.32162 5.35168 5.45589 5.48349 5.68328 5.81747 5.84139 5.90722 5.96828 6.00644 6.04983 6.10454 6.16690 6.29507 6.32842 6.42216 6.47721 6.69349 6.85228 6.92742 6.95070 7.27627 7.58814 7.77313 7.78252 7.99761 8.22875 8.86017 9.39064 9.59305 11.04326 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.036229 B = 0.005864 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.669688 B = 4773.806282 C = 5243.135931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.042 3.958 3 N -0.525 5.525 4 C 0.035 3.965 5 C 0.237 3.763 6 H 0.062 0.938 7 O -0.556 6.556 8 C -0.573 4.573 9 H 0.054 0.946 10 C 0.080 3.920 11 N -0.857 5.857 12 Si 0.887 3.113 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.085 3.915 17 C -0.193 4.193 18 C 0.061 3.939 19 N -0.688 5.688 20 C 0.056 3.944 21 C -0.152 4.152 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.042 0.958 25 H 0.089 0.911 26 H 0.027 0.973 27 H 0.022 0.978 28 H 0.062 0.938 29 H 0.338 0.662 30 H 0.259 0.741 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.337 0.663 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 -2.359 14.893 15.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 N -0.247 5.247 4 C -0.093 4.093 5 C 0.180 3.820 6 H 0.080 0.920 7 O -0.359 6.359 8 C -0.611 4.611 9 H 0.072 0.928 10 C -0.126 4.126 11 N -0.493 5.493 12 Si 0.715 3.285 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.024 4.024 17 C -0.233 4.233 18 C -0.069 4.069 19 N -0.316 5.316 20 C -0.074 4.074 21 C -0.191 4.191 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.107 0.893 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.081 0.919 29 H 0.181 0.819 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.154 0.846 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.829 -1.206 14.902 15.062 hybrid contribution 1.799 -1.041 -1.180 2.391 sum -0.030 -2.247 13.721 13.904 Atomic orbital electron populations 1.21882 0.95935 0.99870 1.02374 1.22358 0.95968 0.89320 1.00898 1.62251 1.33609 1.22026 1.06807 1.23015 0.89987 0.99283 0.97002 1.19370 0.93623 0.83672 0.85365 0.91998 1.86626 1.41792 1.16814 1.90653 1.21685 0.94985 1.52300 0.92152 0.92814 1.25019 0.95432 0.93929 0.98208 1.70099 1.21305 1.46518 1.11400 0.86645 0.83122 0.77987 0.80773 1.19792 1.20923 1.20868 1.21795 0.93202 0.98507 0.88873 1.23000 1.00950 1.01038 0.98348 1.21951 0.92316 1.01838 0.90783 1.60706 1.05272 1.12305 1.53281 1.22049 0.94399 0.97567 0.93397 1.22500 0.98408 1.02510 0.95679 0.93106 0.91772 0.93921 0.89336 0.95491 0.95929 0.91934 0.81884 0.93089 0.90657 0.91693 0.91293 0.91037 0.91189 0.84565 0.91046 0.90892 0.90759 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.79 37.16 0.36 -1.87 16 2 C 0.04 0.70 4.59 -3.82 -0.02 0.68 16 3 N -0.52 -9.31 4.32 -226.49 -0.98 -10.29 16 4 C 0.03 0.71 3.70 -3.82 -0.01 0.69 16 5 C 0.24 5.98 3.05 -27.88 -0.09 5.89 16 6 H 0.06 1.78 8.14 -51.93 -0.42 1.36 16 7 O -0.56 -13.92 10.41 -35.23 -0.37 -14.29 16 8 C -0.57 -15.66 8.76 -34.44 -0.30 -15.96 16 9 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 10 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 11 N -0.86 -25.42 12.84 55.43 0.71 -24.70 16 12 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 13 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 C 0.09 1.25 2.24 -67.59 -0.15 1.09 16 17 C -0.19 -2.51 4.81 -26.65 -0.13 -2.63 16 18 C 0.06 0.69 6.55 -3.83 -0.03 0.66 16 19 N -0.69 -7.38 6.87 -113.82 -0.78 -8.17 16 20 C 0.06 0.60 6.55 -3.84 -0.03 0.57 16 21 C -0.15 -1.88 4.10 -26.65 -0.11 -1.99 16 22 H 0.05 0.72 5.26 -51.93 -0.27 0.45 16 23 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.09 1.64 4.88 -51.93 -0.25 1.39 16 26 H 0.03 0.41 5.12 -51.93 -0.27 0.14 16 27 H 0.02 0.45 7.46 -51.93 -0.39 0.06 16 28 H 0.06 1.28 7.82 -51.93 -0.41 0.88 16 29 H 0.34 7.59 8.39 45.56 0.38 7.97 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.08 1.16 8.00 -51.93 -0.42 0.75 16 32 H 0.06 0.86 5.98 -51.93 -0.31 0.55 16 33 H 0.07 0.98 7.11 -51.93 -0.37 0.61 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.34 3.34 8.86 -39.29 -0.35 2.99 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.98 8.00 -51.93 -0.42 0.56 16 40 H 0.07 0.87 5.42 -51.93 -0.28 0.59 16 LS Contribution 300.18 15.07 4.52 4.52 Total: -1.00 -29.29 300.18 -8.35 -37.63 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.84 Total: 9.87 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -0.59 Total: -10.72 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: -1.05 Total: -43.16 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.37 Total: -14.29 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.29 -8.35 -37.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577731379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.770 kcal (2) G-P(sol) polarization free energy of solvation -29.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds