Wall clock time and date at job start Sun Mar 29 2020 22:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.47065 * 2 1 4 4 C 1.46901 * 110.99696 * 219.65153 * 3 2 1 5 5 C 1.52997 * 109.47363 * 77.11259 * 4 3 2 6 6 H 1.08999 * 109.46799 * 54.52763 * 5 4 3 7 7 O 1.42896 * 109.47156 * 294.52806 * 5 4 3 8 8 C 1.50701 * 109.47555 * 174.52868 * 5 4 3 9 9 H 1.08003 * 119.99227 * 359.97438 * 8 5 4 10 10 C 1.37870 * 120.00255 * 180.02562 * 8 5 4 11 11 N 1.31517 * 120.00069 * 359.97438 * 10 8 5 12 12 Si 1.86806 * 120.00103 * 179.97438 * 10 8 5 13 13 H 1.48507 * 109.46935 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47139 * 119.99757 * 12 10 8 15 15 H 1.48498 * 109.47158 * 239.99764 * 12 10 8 16 16 C 1.46899 * 111.00063 * 95.70053 * 3 2 1 17 17 C 1.53116 * 109.52399 * 61.07865 * 16 3 2 18 18 C 1.53043 * 109.27757 * 182.44200 * 17 16 3 19 19 N 1.46847 * 109.52226 * 59.17747 * 18 17 16 20 20 C 1.46844 * 111.19930 * 298.26033 * 19 18 17 21 21 C 1.53033 * 109.52555 * 61.74349 * 20 19 18 22 22 H 1.09003 * 109.46938 * 302.46148 * 1 2 3 23 23 H 1.08994 * 109.46928 * 62.46061 * 1 2 3 24 24 H 1.09002 * 109.47079 * 182.45950 * 1 2 3 25 25 H 1.09001 * 109.46836 * 239.99786 * 2 1 3 26 26 H 1.09006 * 109.46974 * 119.99912 * 2 1 3 27 27 H 1.09002 * 109.47297 * 317.11089 * 4 3 2 28 28 H 1.08997 * 109.47082 * 197.11673 * 4 3 2 29 29 H 0.96700 * 114.00370 * 300.00255 * 7 5 4 30 30 H 0.97002 * 119.99611 * 180.02562 * 11 10 8 31 31 H 1.09000 * 109.52361 * 181.27218 * 16 3 2 32 32 H 1.08999 * 109.50395 * 302.38294 * 17 16 3 33 33 H 1.08998 * 109.50662 * 62.50367 * 17 16 3 34 34 H 1.09003 * 109.46199 * 299.16294 * 18 17 16 35 35 H 1.08997 * 109.46317 * 179.19584 * 18 17 16 36 36 H 1.00901 * 111.00102 * 62.35974 * 19 18 17 37 37 H 1.08995 * 109.46137 * 301.72458 * 20 19 18 38 38 H 1.09005 * 109.45425 * 181.75370 * 20 19 18 39 39 H 1.08994 * 109.50692 * 180.88044 * 21 20 19 40 40 H 1.09001 * 109.50728 * 60.75902 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.1907 1.5293 -0.8752 5 6 2.7349 1.5657 -2.3352 6 1 1.9890 2.3501 -2.4634 7 8 2.1646 0.3038 -2.6878 8 6 3.9186 1.8479 -3.2242 9 1 4.8980 1.9878 -2.7910 10 6 3.7510 1.9286 -4.5903 11 7 2.5583 1.7588 -5.1177 12 14 5.2182 2.2792 -5.6922 13 1 6.4383 2.4298 -4.8589 14 1 5.4033 1.1536 -6.6429 15 1 4.9793 3.5334 -6.4504 16 6 2.3236 1.8360 1.3646 17 6 3.4207 0.9515 1.9634 18 6 3.6900 1.3872 3.4056 19 7 2.4561 1.2679 4.1928 20 6 1.4026 2.1440 3.6648 21 6 1.0650 1.7309 2.2304 22 1 -0.3633 0.5516 0.8671 23 1 -0.3633 0.4751 -0.9112 24 1 -0.3633 -1.0267 0.0441 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8627 0.6842 -0.7253 28 1 3.7124 2.4555 -0.6342 29 1 2.7734 -0.4420 -2.5975 30 1 2.4406 1.8153 -6.0789 31 1 2.6627 2.8715 1.3390 32 1 3.0960 -0.0889 1.9522 33 1 4.3329 1.0550 1.3757 34 1 4.0279 2.4235 3.4149 35 1 4.4607 0.7502 3.8395 36 1 2.1433 0.3093 4.2319 37 1 1.7512 3.1767 3.6728 38 1 0.5119 2.0565 4.2870 39 1 0.2941 2.3913 1.8334 40 1 0.7032 0.7027 2.2233 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577731379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:02 Heat of formation + Delta-G solvation = -70.711138 kcal Electronic energy + Delta-G solvation = -18808.127364 eV Core-core repulsion = 16042.528362 eV Total energy + Delta-G solvation = -2765.599002 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.82278 -38.29128 -36.35960 -34.25394 -32.48809 -31.62782 -31.37760 -29.05203 -26.21074 -24.41192 -23.74787 -23.03981 -21.95225 -20.57944 -19.00335 -17.20771 -16.89475 -16.65001 -16.34065 -15.96409 -15.65224 -15.23794 -15.09418 -14.66765 -14.42478 -14.11257 -13.71257 -13.39739 -13.18602 -13.02144 -12.91665 -12.84112 -12.68912 -12.53983 -12.27772 -12.06680 -11.91927 -11.61166 -11.44857 -11.20567 -11.01261 -10.71385 -9.99315 -9.39814 -8.94220 -8.13439 -6.39838 1.38363 1.39721 1.51638 2.37367 3.05924 3.12183 3.43603 3.74034 3.92065 4.14644 4.16700 4.21334 4.27708 4.41628 4.43169 4.50533 4.53499 4.67118 4.75703 4.80571 4.84649 4.93201 4.98649 5.04785 5.05363 5.09449 5.20716 5.28553 5.36261 5.55277 5.61895 5.75084 6.03928 6.06825 6.34333 6.43005 6.50043 6.74489 7.33034 7.54747 8.90809 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.036229 B = 0.005864 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.669688 B = 4773.806282 C = 5243.135931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.045 3.955 3 N -0.540 5.540 4 C 0.057 3.943 5 C 0.241 3.759 6 H 0.016 0.984 7 O -0.567 6.567 8 C -0.587 4.587 9 H 0.057 0.943 10 C 0.027 3.973 11 N -0.899 5.899 12 Si 0.959 3.041 13 H -0.264 1.264 14 H -0.278 1.278 15 H -0.280 1.280 16 C 0.083 3.917 17 C -0.183 4.183 18 C 0.068 3.932 19 N -0.686 5.686 20 C 0.062 3.938 21 C -0.143 4.143 22 H 0.066 0.934 23 H 0.029 0.971 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.028 0.972 28 H 0.057 0.943 29 H 0.349 0.651 30 H 0.261 0.739 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.345 0.655 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 -2.895 16.555 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.083 4.083 3 N -0.263 5.263 4 C -0.072 4.072 5 C 0.183 3.817 6 H 0.034 0.966 7 O -0.370 6.370 8 C -0.625 4.625 9 H 0.075 0.925 10 C -0.176 4.176 11 N -0.536 5.536 12 Si 0.784 3.216 13 H -0.188 1.188 14 H -0.204 1.204 15 H -0.206 1.206 16 C -0.026 4.026 17 C -0.224 4.224 18 C -0.063 4.063 19 N -0.314 5.314 20 C -0.068 4.068 21 C -0.182 4.182 22 H 0.085 0.915 23 H 0.049 0.951 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.193 0.807 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.163 0.837 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.001 -1.749 16.591 16.713 hybrid contribution 1.493 -0.880 -1.660 2.400 sum 0.492 -2.629 14.931 15.169 Atomic orbital electron populations 1.21825 0.95175 1.01042 1.01325 1.22313 0.96508 0.88605 1.00846 1.62157 1.32545 1.23067 1.08549 1.22540 0.90766 0.99201 0.94644 1.19133 0.91615 0.82642 0.88318 0.96597 1.86567 1.42245 1.17102 1.91117 1.22070 0.95658 1.51855 0.92901 0.92475 1.25884 0.98223 0.93622 0.99835 1.70238 1.23667 1.47962 1.11761 0.85517 0.79638 0.77791 0.78637 1.18777 1.20399 1.20561 1.21865 0.95114 0.98097 0.87510 1.22898 0.99491 1.00568 0.99401 1.21914 0.92977 1.01959 0.89431 1.60709 1.05058 1.12916 1.52734 1.22033 0.95139 0.97395 0.92218 1.22433 0.96855 1.02545 0.96379 0.91487 0.95150 0.91905 0.91449 0.93272 0.95369 0.92436 0.80661 0.93044 0.91840 0.91553 0.92672 0.91298 0.89763 0.83664 0.91286 0.89019 0.91657 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.79 71.98 0.70 -3.44 16 2 C 0.04 1.45 4.59 86.30 0.40 1.84 16 3 N -0.54 -19.19 4.32 -870.50 -3.76 -22.95 16 4 C 0.06 2.34 3.70 86.30 0.32 2.66 16 5 C 0.24 12.52 3.05 29.85 0.09 12.61 16 6 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 7 O -0.57 -29.16 10.41 -148.98 -1.55 -30.71 16 8 C -0.59 -32.53 8.76 25.60 0.22 -32.30 16 9 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 10 C 0.03 1.51 5.40 84.65 0.46 1.97 16 11 N -0.90 -54.46 12.84 21.44 0.28 -54.19 16 12 Si 0.96 43.65 29.54 68.60 2.03 45.67 16 13 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 14 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 16 C 0.08 2.33 2.24 45.00 0.10 2.43 16 17 C -0.18 -4.43 4.81 30.65 0.15 -4.28 16 18 C 0.07 1.34 6.55 86.33 0.57 1.91 16 19 N -0.69 -12.64 6.87 -514.01 -3.53 -16.17 16 20 C 0.06 1.16 6.55 86.32 0.57 1.73 16 21 C -0.14 -3.27 4.10 30.65 0.13 -3.15 16 22 H 0.07 1.80 5.26 -2.39 -0.01 1.79 16 23 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.07 2.49 4.88 -2.39 -0.01 2.48 16 26 H 0.05 1.38 5.12 -2.38 -0.01 1.37 16 27 H 0.03 1.12 7.46 -2.39 -0.02 1.10 16 28 H 0.06 2.40 7.82 -2.39 -0.02 2.38 16 29 H 0.35 15.99 8.39 -74.06 -0.62 15.37 16 30 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 31 H 0.06 1.94 8.00 -2.39 -0.02 1.92 16 32 H 0.07 1.59 5.98 -2.39 -0.01 1.58 16 33 H 0.05 1.50 7.11 -2.39 -0.02 1.48 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.35 5.63 8.86 -89.69 -0.79 4.83 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.06 1.63 8.00 -2.39 -0.02 1.61 16 40 H 0.07 1.63 5.42 -2.39 -0.01 1.61 16 Total: -1.00 -63.48 300.18 -3.22 -66.71 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: -0.38 Total: 29.68 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 3.70 Total: -18.04 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -7.02 Total: -93.31 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -1.55 Total: -30.71 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -63.48 -3.22 -66.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577731379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.005 kcal (2) G-P(sol) polarization free energy of solvation -63.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds