Wall clock time and date at job start Sun Mar 29 2020 22:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.46887 * 2 1 4 4 C 1.46904 * 110.99801 * 164.29949 * 3 2 1 5 5 C 1.53001 * 109.47271 * 293.95579 * 4 3 2 6 6 H 1.09000 * 109.47068 * 59.99686 * 5 4 3 7 7 O 1.42898 * 109.46888 * 299.99820 * 5 4 3 8 8 C 1.50698 * 109.47054 * 180.02562 * 5 4 3 9 9 H 1.08006 * 119.99818 * 359.97438 * 8 5 4 10 10 C 1.37878 * 120.00259 * 179.72485 * 8 5 4 11 11 N 1.31521 * 119.99427 * 0.27638 * 10 8 5 12 12 Si 1.86795 * 120.00306 * 180.27155 * 10 8 5 13 13 H 1.48497 * 109.47188 * 60.00141 * 12 10 8 14 14 H 1.48501 * 109.47172 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47361 * 299.99937 * 12 10 8 16 16 C 1.46899 * 111.00225 * 288.25536 * 3 2 1 17 17 H 1.08996 * 109.50059 * 46.87331 * 16 3 2 18 18 C 1.53119 * 109.50412 * 166.99403 * 16 3 2 19 19 C 1.53117 * 109.16054 * 177.59608 * 18 16 3 20 20 C 1.53042 * 109.27785 * 302.34066 * 19 18 16 21 21 N 1.46858 * 109.51788 * 59.18141 * 20 19 18 22 22 C 1.46842 * 111.19707 * 298.25810 * 21 20 19 23 23 H 1.09006 * 109.46962 * 65.87418 * 1 2 3 24 24 H 1.09005 * 109.47386 * 185.87620 * 1 2 3 25 25 H 1.09005 * 109.47084 * 305.87820 * 1 2 3 26 26 H 1.08990 * 109.47088 * 239.99881 * 2 1 3 27 27 H 1.09000 * 109.46479 * 120.00055 * 2 1 3 28 28 H 1.09000 * 109.47331 * 173.95425 * 4 3 2 29 29 H 1.08995 * 109.46707 * 53.95581 * 4 3 2 30 30 H 0.96701 * 114.00163 * 299.99579 * 7 5 4 31 31 H 0.97007 * 119.99546 * 180.02562 * 11 10 8 32 32 H 1.09001 * 109.52086 * 297.49978 * 18 16 3 33 33 H 1.09004 * 109.52108 * 57.69124 * 18 16 3 34 34 H 1.09008 * 109.50412 * 182.40826 * 19 18 16 35 35 H 1.08995 * 109.53887 * 62.30577 * 19 18 16 36 36 H 1.08999 * 109.46342 * 299.16966 * 20 19 18 37 37 H 1.08997 * 109.45248 * 179.18407 * 20 19 18 38 38 H 1.00897 * 110.99629 * 174.15536 * 21 20 19 39 39 H 1.09002 * 109.45862 * 301.72291 * 22 21 20 40 40 H 1.09003 * 109.45101 * 181.75508 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4399 1.4412 0.3711 5 6 3.6049 0.9968 1.8258 6 1 3.2404 -0.0244 1.9373 7 8 2.8554 1.8658 2.6773 8 6 5.0618 1.0551 2.2067 9 1 5.7966 1.3766 1.4833 10 6 5.4562 0.7030 3.4801 11 7 4.5614 0.3110 4.3607 12 14 7.2611 0.7825 3.9545 13 1 7.7529 2.1750 3.7989 14 1 7.4208 0.3557 5.3679 15 1 8.0448 -0.1205 3.0737 16 6 1.7901 2.0245 -1.3024 17 1 0.7689 1.8284 -1.6291 18 6 2.0058 3.5351 -1.1752 19 6 1.8235 4.1862 -2.5490 20 6 2.8055 3.5576 -3.5404 21 7 2.5579 2.1126 -3.6268 22 6 2.7729 1.4586 -2.3298 23 1 -0.3633 0.4201 -0.9380 24 1 -0.3634 -1.0223 0.1052 25 1 -0.3633 0.6023 0.8327 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8044 2.4624 0.2596 29 1 4.0116 0.7784 -0.2784 30 1 3.1263 2.7928 2.6298 31 1 4.8388 0.0636 5.2568 32 1 1.2789 3.9493 -0.4765 33 1 3.0146 3.7296 -0.8108 34 1 2.0179 5.2562 -2.4734 35 1 0.8029 4.0254 -2.8961 36 1 3.8263 3.7314 -3.2001 37 1 2.6682 4.0090 -4.5229 38 1 3.1285 1.6903 -4.3438 39 1 3.7940 1.6422 -1.9953 40 1 2.6122 0.3854 -2.4334 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577731574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:07 Heat of formation + Delta-G solvation = -50.381454 kcal Electronic energy + Delta-G solvation = -18810.253547 eV Core-core repulsion = 16045.536107 eV Total energy + Delta-G solvation = -2764.717440 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.37063 -36.53565 -34.75361 -32.05041 -31.88257 -30.70535 -29.42746 -27.02390 -24.40643 -23.68342 -22.88924 -21.29060 -20.36722 -18.49445 -17.10191 -16.48359 -15.30070 -14.66256 -14.59226 -14.46323 -14.14351 -14.03441 -13.74308 -13.45858 -13.18733 -12.78171 -12.46691 -12.30822 -11.73673 -11.49457 -11.33986 -11.07556 -10.94096 -10.90091 -10.82348 -10.54167 -10.29171 -10.24062 -10.04152 -9.93092 -8.91483 -8.53389 -8.48755 -8.05382 -7.51331 -5.98607 -4.16986 3.28543 3.34193 3.35493 4.12986 4.37245 4.55732 4.99960 5.06101 5.09612 5.27697 5.29022 5.46274 5.55498 5.63357 5.65968 5.79832 5.80822 5.91900 5.97605 5.97993 6.13441 6.19647 6.22882 6.30036 6.46004 6.53175 6.55191 6.59890 6.71631 6.88558 6.96784 7.33309 7.64525 7.72696 7.81757 7.93749 8.23244 8.86761 9.48909 9.65898 11.05377 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026553 B = 0.006582 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.259415 B = 4253.265745 C = 4756.655472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.047 3.953 3 N -0.517 5.517 4 C 0.028 3.972 5 C 0.237 3.763 6 H 0.054 0.946 7 O -0.553 6.553 8 C -0.575 4.575 9 H 0.052 0.948 10 C 0.081 3.919 11 N -0.858 5.858 12 Si 0.888 3.112 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.277 1.277 16 C 0.087 3.913 17 H 0.083 0.917 18 C -0.112 4.112 19 C -0.115 4.115 20 C 0.057 3.943 21 N -0.687 5.687 22 C 0.024 3.976 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.024 0.976 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.025 0.975 30 H 0.341 0.659 31 H 0.261 0.739 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.028 0.972 37 H 0.069 0.931 38 H 0.337 0.663 39 H 0.037 0.963 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.786 4.005 -13.342 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 N -0.240 5.240 4 C -0.099 4.099 5 C 0.179 3.821 6 H 0.071 0.929 7 O -0.354 6.354 8 C -0.614 4.614 9 H 0.070 0.930 10 C -0.126 4.126 11 N -0.493 5.493 12 Si 0.715 3.285 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.203 1.203 16 C -0.022 4.022 17 H 0.101 0.899 18 C -0.150 4.150 19 C -0.154 4.154 20 C -0.073 4.073 21 N -0.319 5.319 22 C -0.107 4.107 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.042 0.958 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.184 0.816 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.154 0.846 39 H 0.055 0.945 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.084 3.675 -12.530 14.406 hybrid contribution 2.961 0.000 -0.506 3.004 sum -3.122 3.675 -13.036 13.900 Atomic orbital electron populations 1.21746 0.95638 1.00883 1.01714 1.22110 0.95499 0.89677 1.00822 1.62305 1.19408 1.16661 1.25610 1.23100 0.85741 1.00320 1.00784 1.19331 0.90161 0.90589 0.81999 0.92852 1.86559 1.62020 1.19239 1.67598 1.21628 0.93397 1.48506 0.97837 0.92983 1.25011 0.97033 0.93996 0.96515 1.70076 1.32909 1.41867 1.04491 0.86765 0.85683 0.78522 0.77540 1.20185 1.21148 1.20277 1.21727 0.98718 0.94178 0.87605 0.89935 1.21606 1.02449 0.94665 0.96237 1.21575 0.99855 0.98826 0.95129 1.21935 0.97356 0.88563 0.99430 1.60283 1.60890 1.03374 1.07305 1.22709 0.99171 0.98766 0.90055 0.93558 0.93060 0.91674 0.95798 0.89818 0.91851 0.95703 0.81590 0.92956 0.90998 0.91979 0.91689 0.91390 0.95368 0.91210 0.84571 0.94494 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.86 37.16 0.37 -1.76 16 2 C 0.05 0.81 5.47 -3.82 -0.02 0.79 16 3 N -0.52 -9.34 4.26 -226.56 -0.96 -10.31 16 4 C 0.03 0.58 3.40 -3.82 -0.01 0.56 16 5 C 0.24 6.01 2.74 -27.88 -0.08 5.93 16 6 H 0.05 1.49 6.28 -51.93 -0.33 1.16 16 7 O -0.55 -14.48 12.58 -35.23 -0.44 -14.92 16 8 C -0.58 -15.83 8.76 -34.44 -0.30 -16.13 16 9 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 10 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 11 N -0.86 -25.49 12.83 55.43 0.71 -24.78 16 12 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 C 0.09 1.34 2.24 -67.64 -0.15 1.19 16 17 H 0.08 1.28 6.43 -51.93 -0.33 0.94 16 18 C -0.11 -1.60 5.33 -26.61 -0.14 -1.74 16 19 C -0.12 -1.35 6.09 -26.65 -0.16 -1.51 16 20 C 0.06 0.64 6.55 -3.83 -0.03 0.62 16 21 N -0.69 -8.47 6.85 -113.81 -0.78 -9.25 16 22 C 0.02 0.34 5.07 -3.84 -0.02 0.32 16 23 H 0.05 0.63 6.77 -51.93 -0.35 0.28 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.02 0.39 6.46 -51.93 -0.34 0.05 16 27 H 0.08 1.67 5.94 -51.93 -0.31 1.36 16 28 H 0.06 1.30 6.21 -51.93 -0.32 0.97 16 29 H 0.02 0.51 6.81 -51.93 -0.35 0.16 16 30 H 0.34 8.11 9.04 45.56 0.41 8.52 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.96 6.40 -51.93 -0.33 0.63 16 34 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.34 3.56 8.90 -39.29 -0.35 3.21 16 39 H 0.04 0.59 6.48 -51.93 -0.34 0.25 16 40 H 0.07 1.02 6.67 -51.93 -0.35 0.68 16 LS Contribution 303.74 15.07 4.58 4.58 Total: -1.00 -29.79 303.74 -8.35 -38.13 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -5.79 Total: 9.89 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -0.64 Total: -9.56 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -1.03 Total: -44.34 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.44 Total: -14.92 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.79 -8.35 -38.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577731574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.247 kcal (2) G-P(sol) polarization free energy of solvation -29.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds