Wall clock time and date at job start Sun Mar 29 2020 22:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.46887 * 2 1 4 4 C 1.46904 * 110.99801 * 164.29949 * 3 2 1 5 5 C 1.53001 * 109.47271 * 293.95579 * 4 3 2 6 6 H 1.09000 * 109.47068 * 59.99686 * 5 4 3 7 7 O 1.42898 * 109.46888 * 299.99820 * 5 4 3 8 8 C 1.50698 * 109.47054 * 180.02562 * 5 4 3 9 9 H 1.08006 * 119.99818 * 359.97438 * 8 5 4 10 10 C 1.37878 * 120.00259 * 179.72485 * 8 5 4 11 11 N 1.31521 * 119.99427 * 0.27638 * 10 8 5 12 12 Si 1.86795 * 120.00306 * 180.27155 * 10 8 5 13 13 H 1.48497 * 109.47188 * 60.00141 * 12 10 8 14 14 H 1.48501 * 109.47172 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47361 * 299.99937 * 12 10 8 16 16 C 1.46899 * 111.00225 * 288.25536 * 3 2 1 17 17 H 1.08996 * 109.50059 * 46.87331 * 16 3 2 18 18 C 1.53119 * 109.50412 * 166.99403 * 16 3 2 19 19 C 1.53117 * 109.16054 * 177.59608 * 18 16 3 20 20 C 1.53042 * 109.27785 * 302.34066 * 19 18 16 21 21 N 1.46858 * 109.51788 * 59.18141 * 20 19 18 22 22 C 1.46842 * 111.19707 * 298.25810 * 21 20 19 23 23 H 1.09006 * 109.46962 * 65.87418 * 1 2 3 24 24 H 1.09005 * 109.47386 * 185.87620 * 1 2 3 25 25 H 1.09005 * 109.47084 * 305.87820 * 1 2 3 26 26 H 1.08990 * 109.47088 * 239.99881 * 2 1 3 27 27 H 1.09000 * 109.46479 * 120.00055 * 2 1 3 28 28 H 1.09000 * 109.47331 * 173.95425 * 4 3 2 29 29 H 1.08995 * 109.46707 * 53.95581 * 4 3 2 30 30 H 0.96701 * 114.00163 * 299.99579 * 7 5 4 31 31 H 0.97007 * 119.99546 * 180.02562 * 11 10 8 32 32 H 1.09001 * 109.52086 * 297.49978 * 18 16 3 33 33 H 1.09004 * 109.52108 * 57.69124 * 18 16 3 34 34 H 1.09008 * 109.50412 * 182.40826 * 19 18 16 35 35 H 1.08995 * 109.53887 * 62.30577 * 19 18 16 36 36 H 1.08999 * 109.46342 * 299.16966 * 20 19 18 37 37 H 1.08997 * 109.45248 * 179.18407 * 20 19 18 38 38 H 1.00897 * 110.99629 * 174.15536 * 21 20 19 39 39 H 1.09002 * 109.45862 * 301.72291 * 22 21 20 40 40 H 1.09003 * 109.45101 * 181.75508 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4399 1.4412 0.3711 5 6 3.6049 0.9968 1.8258 6 1 3.2404 -0.0244 1.9373 7 8 2.8554 1.8658 2.6773 8 6 5.0618 1.0551 2.2067 9 1 5.7966 1.3766 1.4833 10 6 5.4562 0.7030 3.4801 11 7 4.5614 0.3110 4.3607 12 14 7.2611 0.7825 3.9545 13 1 7.7529 2.1750 3.7989 14 1 7.4208 0.3557 5.3679 15 1 8.0448 -0.1205 3.0737 16 6 1.7901 2.0245 -1.3024 17 1 0.7689 1.8284 -1.6291 18 6 2.0058 3.5351 -1.1752 19 6 1.8235 4.1862 -2.5490 20 6 2.8055 3.5576 -3.5404 21 7 2.5579 2.1126 -3.6268 22 6 2.7729 1.4586 -2.3298 23 1 -0.3633 0.4201 -0.9380 24 1 -0.3634 -1.0223 0.1052 25 1 -0.3633 0.6023 0.8327 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8044 2.4624 0.2596 29 1 4.0116 0.7784 -0.2784 30 1 3.1263 2.7928 2.6298 31 1 4.8388 0.0636 5.2568 32 1 1.2789 3.9493 -0.4765 33 1 3.0146 3.7296 -0.8108 34 1 2.0179 5.2562 -2.4734 35 1 0.8029 4.0254 -2.8961 36 1 3.8263 3.7314 -3.2001 37 1 2.6682 4.0090 -4.5229 38 1 3.1285 1.6903 -4.3438 39 1 3.7940 1.6422 -1.9953 40 1 2.6122 0.3854 -2.4334 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577731574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:07 Heat of formation + Delta-G solvation = -74.393374 kcal Electronic energy + Delta-G solvation = -18811.294782 eV Core-core repulsion = 16045.536107 eV Total energy + Delta-G solvation = -2765.758675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.65437 -38.05332 -36.46878 -34.21426 -32.96442 -32.00116 -30.98735 -28.71081 -26.20953 -24.79550 -24.09756 -23.03793 -21.60927 -19.90971 -18.98869 -17.75816 -16.81752 -16.64667 -16.10983 -15.86381 -15.63548 -15.37441 -15.20668 -14.67874 -14.62016 -14.31737 -13.84684 -13.41633 -13.34060 -13.14224 -12.80832 -12.74998 -12.68481 -12.49849 -12.25552 -12.06574 -11.71135 -11.54089 -11.42632 -11.28817 -10.89753 -10.65998 -10.07573 -9.52489 -8.97419 -8.13452 -6.39683 1.38785 1.40317 1.48633 2.37195 2.95820 3.12453 3.34606 3.85409 3.93239 4.06417 4.13786 4.26234 4.31304 4.36373 4.39902 4.44152 4.54910 4.67663 4.71207 4.77695 4.82639 4.86241 4.95994 5.02539 5.08476 5.14327 5.18127 5.32096 5.42419 5.44201 5.59962 5.76536 5.93317 6.04376 6.25686 6.41319 6.45202 6.73800 7.34391 7.62980 8.90718 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026553 B = 0.006582 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.259415 B = 4253.265745 C = 4756.655472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.046 3.954 3 N -0.526 5.526 4 C 0.052 3.948 5 C 0.238 3.762 6 H 0.020 0.980 7 O -0.568 6.568 8 C -0.590 4.590 9 H 0.056 0.944 10 C 0.027 3.973 11 N -0.898 5.898 12 Si 0.958 3.042 13 H -0.267 1.267 14 H -0.283 1.283 15 H -0.269 1.269 16 C 0.089 3.911 17 H 0.088 0.912 18 C -0.111 4.111 19 C -0.110 4.110 20 C 0.055 3.945 21 N -0.685 5.685 22 C 0.033 3.967 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.049 0.951 26 H 0.036 0.964 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.021 0.979 30 H 0.350 0.650 31 H 0.261 0.739 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.021 0.979 37 H 0.095 0.905 38 H 0.349 0.651 39 H 0.019 0.981 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.523 4.864 -15.122 16.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.082 4.082 3 N -0.250 5.250 4 C -0.076 4.076 5 C 0.180 3.820 6 H 0.038 0.962 7 O -0.371 6.371 8 C -0.629 4.629 9 H 0.074 0.926 10 C -0.175 4.175 11 N -0.535 5.535 12 Si 0.782 3.218 13 H -0.192 1.192 14 H -0.209 1.209 15 H -0.194 1.194 16 C -0.020 4.020 17 H 0.106 0.894 18 C -0.149 4.149 19 C -0.148 4.148 20 C -0.074 4.074 21 N -0.317 5.317 22 C -0.099 4.099 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.194 0.806 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.040 0.960 37 H 0.113 0.887 38 H 0.168 0.832 39 H 0.037 0.963 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.820 4.543 -14.343 16.131 hybrid contribution 2.823 -0.266 0.016 2.836 sum -2.996 4.277 -14.326 15.248 Atomic orbital electron populations 1.21665 0.93474 1.01904 1.01932 1.22106 0.97229 0.89189 0.99695 1.62253 1.17477 1.17306 1.27936 1.22623 0.87566 0.99880 0.97490 1.19198 0.89012 0.89164 0.84663 0.96187 1.86505 1.62250 1.19973 1.68346 1.22023 0.94594 1.48095 0.98155 0.92627 1.25877 1.01677 0.93471 0.96489 1.70221 1.35276 1.43130 1.04872 0.85645 0.79968 0.78944 0.77203 1.19200 1.20867 1.19433 1.21771 0.99203 0.94658 0.86323 0.89361 1.21596 1.01233 0.94049 0.97980 1.21559 1.00290 0.99651 0.93288 1.22026 0.96845 0.87908 1.00654 1.60276 1.61160 1.03987 1.06297 1.22512 0.97667 0.98731 0.90961 0.91823 0.91323 0.93198 0.94600 0.93216 0.91687 0.96101 0.80594 0.92977 0.91636 0.93558 0.89919 0.90848 0.96019 0.88683 0.83221 0.96300 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.86 71.98 0.71 -3.12 16 2 C 0.05 1.60 5.47 86.31 0.47 2.07 16 3 N -0.53 -19.11 4.26 -870.70 -3.71 -22.82 16 4 C 0.05 2.19 3.40 86.30 0.29 2.49 16 5 C 0.24 12.41 2.74 29.85 0.08 12.49 16 6 H 0.02 1.19 6.28 -2.39 -0.02 1.18 16 7 O -0.57 -30.60 12.58 -148.98 -1.87 -32.48 16 8 C -0.59 -32.96 8.76 25.60 0.22 -32.73 16 9 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 10 C 0.03 1.56 5.40 84.65 0.46 2.01 16 11 N -0.90 -54.49 12.83 21.45 0.28 -54.21 16 12 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 13 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 16 C 0.09 2.64 2.24 44.97 0.10 2.74 16 17 H 0.09 2.55 6.43 -2.39 -0.02 2.53 16 18 C -0.11 -3.02 5.33 30.67 0.16 -2.86 16 19 C -0.11 -2.28 6.09 30.65 0.19 -2.09 16 20 C 0.05 1.09 6.55 86.33 0.57 1.66 16 21 N -0.69 -15.19 6.85 -513.99 -3.52 -18.70 16 22 C 0.03 0.90 5.07 86.33 0.44 1.33 16 23 H 0.06 1.62 6.77 -2.38 -0.02 1.60 16 24 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.04 1.16 6.46 -2.39 -0.02 1.14 16 27 H 0.05 2.08 5.94 -2.39 -0.01 2.06 16 28 H 0.06 2.68 6.21 -2.39 -0.01 2.67 16 29 H 0.02 0.88 6.81 -2.39 -0.02 0.86 16 30 H 0.35 17.02 9.04 -74.06 -0.67 16.35 16 31 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.05 1.41 6.40 -2.39 -0.02 1.39 16 34 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.35 6.48 8.90 -89.70 -0.80 5.68 16 39 H 0.02 0.59 6.48 -2.39 -0.02 0.57 16 40 H 0.07 1.87 6.67 -2.39 -0.02 1.85 16 Total: -1.00 -64.12 303.74 -3.54 -67.66 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -0.43 Total: 30.84 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 3.69 Total: -16.02 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -6.95 Total: -95.73 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -1.87 Total: -32.48 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -64.12 -3.54 -67.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577731574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.735 kcal (2) G-P(sol) polarization free energy of solvation -64.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds