Wall clock time and date at job start Sun Mar 29 2020 22:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46969 * 2 1 4 4 N 1.46502 * 109.47102 * 239.99602 * 2 1 3 5 5 C 1.34777 * 119.99775 * 85.00453 * 4 2 1 6 6 O 1.21285 * 119.99974 * 359.97438 * 5 4 2 7 7 C 1.50695 * 119.99815 * 179.72263 * 5 4 2 8 8 S 1.81006 * 109.47105 * 180.27224 * 7 5 4 9 9 C 1.76197 * 99.99817 * 179.97438 * 8 7 5 10 10 H 1.08002 * 120.00185 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99621 * 179.97438 * 9 8 7 12 12 N 1.31630 * 120.00316 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99834 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47083 * 59.99932 * 13 11 9 15 15 H 1.48497 * 109.47098 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47077 * 300.00233 * 13 11 9 17 17 C 1.53000 * 109.46689 * 119.99763 * 2 1 3 18 18 C 1.53782 * 113.61482 * 282.59910 * 17 2 1 19 19 C 1.53963 * 87.01667 * 220.04972 * 18 17 2 20 20 C 1.53780 * 87.11244 * 25.36345 * 19 18 17 21 21 H 1.08994 * 109.47203 * 180.39688 * 1 2 3 22 22 H 1.08995 * 109.47449 * 300.39889 * 1 2 3 23 23 H 1.09002 * 109.46785 * 60.39792 * 1 2 3 24 24 H 0.96993 * 119.99795 * 264.99929 * 4 2 1 25 25 H 1.08994 * 109.47421 * 300.27363 * 7 5 4 26 26 H 1.09004 * 109.46981 * 60.27651 * 7 5 4 27 27 H 0.96995 * 120.00162 * 180.02562 * 12 11 9 28 28 H 1.08997 * 112.84930 * 53.79480 * 17 2 1 29 29 H 1.09000 * 113.61302 * 334.56556 * 18 17 2 30 30 H 1.08995 * 113.61728 * 105.47137 * 18 17 2 31 31 H 1.08996 * 113.53508 * 270.80672 * 19 18 17 32 32 H 1.09000 * 113.73863 * 139.94434 * 19 18 17 33 33 H 1.09005 * 113.61444 * 220.09448 * 20 19 18 34 34 H 1.09000 * 113.61813 * 89.18385 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8583 1.1583 -2.4117 7 6 2.6554 -0.7273 -3.5859 8 16 2.7225 0.4373 -4.9700 9 6 3.3326 -0.6262 -6.2354 10 1 3.5410 -1.6629 -6.0156 11 6 3.5442 -0.1319 -7.5150 12 7 3.2897 1.1314 -7.7831 13 14 4.1903 -1.2596 -8.8569 14 1 3.2407 -2.3833 -9.0588 15 1 4.3290 -0.4946 -10.1221 16 1 5.5153 -1.7972 -8.4562 17 6 2.0399 -0.7212 1.2493 18 6 1.9555 0.1281 2.5285 19 6 3.3265 -0.4581 2.9119 20 6 3.5687 -0.6715 1.4084 21 1 -0.3633 -1.0276 0.0071 22 1 -0.3634 0.5200 0.8863 23 1 -0.3633 0.5077 -0.8936 24 1 2.2491 -1.6318 -1.1525 25 1 3.6538 -1.1195 -3.3924 26 1 1.9841 -1.5492 -3.8350 27 1 3.4372 1.4767 -8.6774 28 1 1.6216 -1.7215 1.3609 29 1 1.9764 1.2018 2.3419 30 1 1.1492 -0.1704 3.1984 31 1 3.2598 -1.3862 3.4796 32 1 4.0028 0.2672 3.3645 33 1 4.0628 -1.6148 1.1753 34 1 4.0315 0.1832 0.9150 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129235856.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:52 Heat of formation + Delta-G solvation = -56.961636 kcal Electronic energy + Delta-G solvation = -15126.445168 eV Core-core repulsion = 12570.643503 eV Total energy + Delta-G solvation = -2555.801664 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.00848 -39.49008 -35.77288 -34.58530 -32.41167 -29.91875 -27.66547 -26.75552 -26.21394 -22.83837 -21.58213 -20.40018 -19.74097 -17.82252 -17.53939 -16.87919 -16.40892 -16.21573 -15.82546 -15.50071 -14.70828 -14.53695 -14.34660 -13.69397 -13.38898 -13.30781 -13.17432 -13.09173 -12.86400 -12.70344 -12.58379 -12.16808 -11.75965 -11.41827 -11.30715 -11.13160 -11.11002 -10.81920 -10.28129 -10.03604 -8.67133 -8.34486 -6.13029 1.27201 1.44112 1.47120 1.57091 1.64208 2.26671 2.31553 2.99506 3.31994 3.64049 3.73227 3.81308 4.01100 4.05250 4.26839 4.32892 4.34688 4.47683 4.50782 4.76622 4.88520 4.90027 4.90560 5.06681 5.11445 5.13446 5.27472 5.35705 5.41228 5.55840 5.66748 6.19480 6.56179 7.06468 7.29326 8.74616 Molecular weight = 243.10amu Principal moments of inertia in cm(-1) A = 0.050730 B = 0.004340 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.813680 B = 6450.340658 C = 6679.576452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.150 3.850 3 H 0.058 0.942 4 N -0.706 5.706 5 C 0.533 3.467 6 O -0.568 6.568 7 C -0.129 4.129 8 S -0.153 6.153 9 C -0.549 4.549 10 H 0.083 0.917 11 C 0.014 3.986 12 N -0.912 5.912 13 Si 0.999 3.001 14 H -0.262 1.262 15 H -0.279 1.279 16 H -0.262 1.262 17 C -0.110 4.110 18 C -0.129 4.129 19 C -0.136 4.136 20 C -0.142 4.142 21 H 0.072 0.928 22 H 0.081 0.919 23 H 0.029 0.971 24 H 0.414 0.586 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.271 0.729 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.735 -8.883 20.432 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.077 0.923 4 N -0.359 5.359 5 C 0.319 3.681 6 O -0.446 6.446 7 C -0.280 4.280 8 S 0.074 5.926 9 C -0.696 4.696 10 H 0.101 0.899 11 C -0.191 4.191 12 N -0.548 5.548 13 Si 0.820 3.180 14 H -0.186 1.186 15 H -0.204 1.204 16 H -0.186 1.186 17 C -0.129 4.129 18 C -0.167 4.167 19 C -0.173 4.173 20 C -0.179 4.179 21 H 0.091 0.909 22 H 0.100 0.900 23 H 0.048 0.952 24 H 0.251 0.749 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.080 0.920 28 H 0.133 0.867 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.221 -6.798 20.247 21.473 hybrid contribution 0.726 -1.756 -1.094 2.192 sum -1.495 -8.554 19.153 21.030 Atomic orbital electron populations 1.22111 0.94858 1.02827 1.01776 1.21061 0.94373 0.96271 0.83714 0.92340 1.45817 1.67264 1.14520 1.08327 1.20065 0.76744 0.86583 0.84701 1.90681 1.50970 1.17817 1.85181 1.23375 1.05389 1.03149 0.96110 1.85577 1.86485 1.17421 1.03086 1.23185 1.50907 0.98496 0.97041 0.89915 1.26137 0.95038 0.97191 1.00708 1.70179 1.46772 1.15502 1.22378 0.84999 0.79085 0.77732 0.76146 1.18612 1.20364 1.18623 1.22868 0.96567 1.00695 0.92758 1.22914 0.98494 0.99285 0.95967 1.22844 0.97006 1.01805 0.95683 1.22908 0.95621 1.02001 0.97378 0.90871 0.89981 0.95217 0.74919 0.87345 0.87342 0.91974 0.86694 0.90805 0.89651 0.88657 0.91462 0.90628 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 9.43 71.98 0.68 -2.73 16 2 C 0.15 3.45 2.28 44.99 0.10 3.55 16 3 H 0.06 1.71 7.49 -2.39 -0.02 1.69 16 4 N -0.71 -18.26 4.94 -442.52 -2.19 -20.45 16 5 C 0.53 20.17 7.81 87.66 0.68 20.85 16 6 O -0.57 -27.04 15.53 -3.04 -0.05 -27.08 16 7 C -0.13 -5.21 6.16 71.23 0.44 -4.77 16 8 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 9 C -0.55 -31.67 9.50 67.96 0.65 -31.03 16 10 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 11 C 0.01 0.80 5.49 84.86 0.47 1.27 16 12 N -0.91 -56.57 13.22 21.65 0.29 -56.28 16 13 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 14 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 15 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 17 C -0.11 -1.68 3.17 -10.27 -0.03 -1.71 16 18 C -0.13 -1.74 7.51 31.18 0.23 -1.50 16 19 C -0.14 -1.73 8.09 31.18 0.25 -1.48 16 20 C -0.14 -2.29 7.51 31.12 0.23 -2.06 16 21 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.08 1.44 8.06 -2.39 -0.02 1.42 16 23 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.41 7.84 8.60 -92.71 -0.80 7.04 16 25 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 26 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 27 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 28 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.16 8.04 -2.39 -0.02 1.14 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 Total: -1.00 -75.03 301.75 2.90 -72.13 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.28 Total: 15.27 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 3.70 Total: -19.61 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -1.90 Total: -76.73 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.05 Total: -27.08 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -75.03 2.90 -72.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129235856.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.172 kcal (2) G-P(sol) polarization free energy of solvation -75.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds