Wall clock time and date at job start Sun Mar 29 2020 23:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.38496 * 119.99994 * 179.97438 * 11 10 9 13 13 C 1.38775 * 121.12910 * 0.02562 * 12 11 10 14 14 C 1.38710 * 119.77704 * 179.97438 * 13 12 11 15 15 N 1.31472 * 121.91798 * 359.97438 * 14 13 12 16 16 C 1.33384 * 121.50033 * 359.97438 * 15 14 13 17 17 C 1.40760 * 121.94340 * 180.02562 * 16 15 14 18 18 C 1.36166 * 118.76671 * 179.21252 * 17 16 15 19 19 N 1.32571 * 121.92677 * 0.78947 * 18 17 16 20 20 C 1.31403 * 122.58071 * 359.46156 * 19 18 17 21 21 C 1.39958 * 119.88392 * 0.02562 * 20 19 18 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 24 24 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 27 27 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 28 28 H 1.07993 * 120.11121 * 359.94756 * 13 12 11 29 29 H 1.07995 * 119.04377 * 179.97438 * 14 13 12 30 30 H 1.08002 * 120.61731 * 359.96374 * 17 16 15 31 31 H 1.08005 * 119.03068 * 180.27557 * 18 17 16 32 32 H 1.08001 * 120.05823 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.2053 -6.1302 0.0013 13 6 3.5928 -6.1575 0.0007 14 6 4.2578 -7.3748 0.0006 15 7 3.6118 -8.5198 0.0016 16 6 2.2788 -8.5679 0.0032 17 6 1.5776 -9.7885 0.0048 18 6 0.2163 -9.7621 0.0228 19 7 -0.4629 -8.6236 0.0233 20 6 0.1254 -7.4487 0.0170 21 6 1.5227 -7.3685 0.0088 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8880 24 1 0.6247 -2.5564 0.8919 25 1 2.8714 -3.6047 -0.8890 26 1 2.8726 -3.6039 0.8910 27 1 0.5429 -4.9308 0.0020 28 1 4.1529 -5.2342 -0.0001 29 1 5.3378 -7.3823 -0.0003 30 1 2.1096 -10.7284 0.0041 31 1 -0.3259 -10.6962 0.0286 32 1 -0.4682 -6.5465 0.0173 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273354133.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:44 Heat of formation + Delta-G solvation = 32.664018 kcal Electronic energy + Delta-G solvation = -16119.189558 eV Core-core repulsion = 13464.123154 eV Total energy + Delta-G solvation = -2655.066404 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.10408 -39.13626 -37.86870 -35.39762 -33.45070 -32.52029 -31.45471 -30.15862 -26.80252 -25.62170 -24.99541 -22.99808 -22.54071 -19.83505 -18.80195 -18.39342 -18.05727 -16.73301 -16.38641 -16.16856 -15.85988 -15.65869 -15.43390 -15.21674 -14.73486 -14.22259 -13.81385 -13.75187 -13.21937 -13.15596 -12.78099 -12.68741 -12.49814 -11.79544 -11.61081 -11.41429 -10.75884 -10.60454 -10.35163 -10.34651 -10.07938 -8.58945 -8.24880 -6.35701 -0.57219 -0.19015 1.00340 1.42979 1.43466 1.54178 2.13013 2.16668 2.44000 3.11265 3.15718 3.34273 3.39240 3.64321 3.74952 3.79261 4.24870 4.36754 4.40479 4.47782 4.57249 4.69574 4.77908 4.82562 5.00597 5.05636 5.31638 5.43987 5.54819 5.68903 5.75096 6.01161 6.14473 6.48526 6.80069 6.92737 7.03742 7.34651 8.87174 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.040984 B = 0.004528 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.027752 B = 6181.688654 C = 6844.258183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.017 3.983 10 C 0.138 3.862 11 N -0.707 5.707 12 C 0.288 3.712 13 C -0.298 4.298 14 C 0.195 3.805 15 N -0.556 5.556 16 C 0.176 3.824 17 C -0.165 4.165 18 C 0.096 3.904 19 N -0.522 5.522 20 C 0.161 3.839 21 C -0.232 4.232 22 H 0.264 0.736 23 H 0.003 0.997 24 H 0.003 0.997 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.405 0.595 28 H 0.148 0.852 29 H 0.191 0.809 30 H 0.162 0.838 31 H 0.189 0.811 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.129 -15.039 0.020 15.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.087 0.913 9 C -0.020 4.020 10 C 0.015 3.985 11 N -0.330 5.330 12 C 0.167 3.833 13 C -0.325 4.325 14 C 0.027 3.973 15 N -0.271 5.271 16 C 0.049 3.951 17 C -0.186 4.186 18 C -0.048 4.048 19 N -0.232 5.232 20 C -0.009 4.009 21 C -0.240 4.240 22 H 0.073 0.927 23 H 0.021 0.979 24 H 0.021 0.979 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.242 0.758 28 H 0.166 0.834 29 H 0.208 0.792 30 H 0.180 0.820 31 H 0.206 0.794 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.563 -15.725 0.031 16.374 hybrid contribution 0.100 2.027 -0.021 2.029 sum 4.663 -13.698 0.010 14.470 Atomic orbital electron populations 1.70070 1.07786 1.27960 1.51173 1.25900 0.95680 1.03288 0.94525 0.85448 0.78759 0.78442 0.78429 1.19926 1.21152 1.18462 1.21473 0.93886 0.91449 1.51209 0.91285 1.19150 0.94542 0.92310 0.96036 1.21537 0.95183 0.80661 1.01096 1.45063 1.09427 1.03196 1.75280 1.18216 0.92669 0.85127 0.87320 1.21717 0.92132 1.01411 1.17278 1.23169 1.01642 0.86056 0.86400 1.68138 1.07176 1.29736 1.22016 1.19132 0.90404 0.92591 0.93017 1.21874 0.95216 0.97607 1.03924 1.22763 0.91523 0.96935 0.93597 1.67617 1.41687 0.98719 1.15135 1.23052 0.90256 0.96736 0.90902 1.19561 0.96721 0.93922 1.13815 0.92693 0.97887 0.97864 0.91617 0.91620 0.75835 0.83390 0.79247 0.82016 0.79422 0.81716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.39 13.29 21.45 0.28 -53.10 16 2 C 0.00 0.25 5.46 84.66 0.46 0.72 16 3 Si 0.96 41.61 29.54 68.60 2.03 43.63 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 6 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 7 C -0.54 -28.04 9.11 25.60 0.23 -27.80 16 8 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 0.80 5.09 29.85 0.15 0.95 16 10 C 0.14 4.91 4.88 86.38 0.42 5.33 16 11 N -0.71 -21.95 5.65 -338.35 -1.91 -23.86 16 12 C 0.29 8.52 6.70 39.00 0.26 8.78 16 13 C -0.30 -7.93 9.36 22.51 0.21 -7.72 16 14 C 0.19 4.74 11.12 84.86 0.94 5.69 16 15 N -0.56 -15.75 10.36 -188.86 -1.96 -17.71 16 16 C 0.18 5.11 6.63 40.40 0.27 5.38 16 17 C -0.17 -3.93 10.08 22.40 0.23 -3.70 16 18 C 0.10 2.16 11.06 84.10 0.93 3.09 16 19 N -0.52 -14.24 10.32 -195.84 -2.02 -16.26 16 20 C 0.16 4.49 10.79 85.17 0.92 5.41 16 21 C -0.23 -6.83 5.75 -21.20 -0.12 -6.95 16 22 H 0.26 14.37 8.31 -92.71 -0.77 13.59 16 23 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 24 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 25 H 0.07 2.27 7.99 -2.39 -0.02 2.25 16 26 H 0.07 2.27 7.99 -2.39 -0.02 2.25 16 27 H 0.41 12.00 6.76 -92.71 -0.63 11.37 16 28 H 0.15 3.60 6.86 -2.91 -0.02 3.58 16 29 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 31 H 0.19 2.76 8.06 -2.91 -0.02 2.73 16 32 H 0.17 4.04 6.59 -2.91 -0.02 4.02 16 Total: -1.00 -62.78 279.19 1.84 -60.94 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.51 Total: 17.20 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 4.91 Total: -10.84 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -5.60 Total: -110.94 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -62.78 1.84 -60.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273354133.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.603 kcal (2) G-P(sol) polarization free energy of solvation -62.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds