Wall clock time and date at job start Sun Mar 29 2020 22:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81404 * 102.99917 * 2 1 4 4 C 1.52999 * 109.47320 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.46913 * 54.99646 * 4 3 2 6 6 C 1.53001 * 109.46865 * 295.00311 * 4 3 2 7 7 C 1.50696 * 109.47391 * 175.00079 * 4 3 2 8 8 O 1.21300 * 119.99752 * 24.47349 * 7 4 3 9 9 N 1.34770 * 120.00011 * 204.47182 * 7 4 3 10 10 C 1.37098 * 119.99946 * 175.62033 * 9 7 4 11 11 H 1.08003 * 120.00286 * 335.19212 * 10 9 7 12 12 C 1.38953 * 119.99905 * 155.18982 * 10 9 7 13 13 N 1.31410 * 119.99871 * 346.18575 * 12 10 9 14 14 Si 1.86805 * 119.99924 * 166.19031 * 12 10 9 15 15 H 1.48503 * 109.46652 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.46875 * 299.99878 * 14 12 10 17 17 H 1.48500 * 109.47243 * 59.99825 * 14 12 10 18 18 C 1.46494 * 120.00195 * 355.62865 * 9 7 4 19 19 C 1.53002 * 117.50499 * 136.33441 * 18 9 7 20 20 C 1.52996 * 117.50261 * 67.67478 * 18 9 7 21 21 H 1.09003 * 109.46861 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47099 * 299.99658 * 1 2 3 23 23 H 1.08999 * 109.46779 * 60.00023 * 1 2 3 24 24 H 1.08998 * 109.46803 * 59.99797 * 3 2 1 25 25 H 1.09003 * 109.46859 * 300.00381 * 3 2 1 26 26 H 1.09004 * 109.47263 * 186.17903 * 6 4 3 27 27 H 1.09002 * 109.46881 * 306.17285 * 6 4 3 28 28 H 1.09003 * 109.47546 * 66.17161 * 6 4 3 29 29 H 0.97005 * 119.99821 * 175.05195 * 13 12 10 30 30 H 1.09005 * 115.55021 * 282.00741 * 18 9 7 31 31 H 1.09000 * 117.49462 * 359.97438 * 19 18 9 32 32 H 1.08994 * 117.50412 * 145.01708 * 19 18 9 33 33 H 1.09000 * 117.50352 * 214.98504 * 20 18 9 34 34 H 1.09004 * 117.49781 * 359.97289 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7424 1.9401 -0.0006 5 1 4.1694 1.3954 -0.8426 6 6 4.3184 1.3916 1.3064 7 6 4.0819 3.4030 -0.1245 8 8 3.2830 4.2433 0.2319 9 7 5.2732 3.7778 -0.6311 10 6 5.5471 5.1067 -0.8274 11 1 4.7394 5.8094 -0.9695 12 6 6.8641 5.5496 -0.8436 13 7 7.8257 4.7673 -0.4076 14 14 7.2675 7.2571 -1.4849 15 1 8.7320 7.4861 -1.3955 16 1 6.8339 7.3692 -2.9007 17 1 6.5572 8.2734 -0.6677 18 6 6.2754 2.7652 -0.9722 19 6 7.0218 2.9282 -2.2978 20 6 5.9656 1.8311 -2.1436 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8031 2.2371 0.8900 25 1 1.8031 2.2371 -0.8900 26 1 5.3847 1.6126 1.3546 27 1 3.8120 1.8590 2.1509 28 1 4.1688 0.3126 1.3450 29 1 8.7513 5.0472 -0.4849 30 1 6.8295 2.3499 -0.1303 31 1 6.7669 3.7887 -2.9163 32 1 8.0668 2.6200 -2.3282 33 1 6.3162 0.8015 -2.0727 34 1 5.0159 1.9697 -2.6603 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343293484.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:30 Heat of formation + Delta-G solvation = -10.194252 kcal Electronic energy + Delta-G solvation = -16171.885808 eV Core-core repulsion = 13618.112129 eV Total energy + Delta-G solvation = -2553.773678 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.05048 -36.26196 -33.88844 -32.74446 -31.10315 -28.99088 -26.79828 -25.40055 -22.73281 -21.37779 -21.13017 -18.46618 -16.93417 -16.36524 -15.53459 -15.07281 -14.60276 -14.56071 -13.98523 -13.67815 -13.44980 -13.31800 -12.95006 -12.36583 -12.05896 -11.81980 -11.67738 -11.17876 -11.09099 -10.85990 -10.75208 -10.57959 -10.40886 -10.36819 -9.84802 -9.71720 -9.34902 -8.78979 -8.29191 -7.69539 -7.50092 -6.28573 -3.88150 1.84441 2.77486 3.19024 3.25319 3.28766 3.87058 4.13212 4.68862 4.80357 5.12426 5.14573 5.16501 5.23730 5.38237 5.55078 5.69840 5.80713 5.91974 5.99263 6.02526 6.09584 6.26828 6.29382 6.37937 6.49857 6.69511 6.76920 6.94815 7.16390 7.57227 8.13206 8.49078 9.18798 9.42310 9.98337 10.75447 Molecular weight = 243.10amu Principal moments of inertia in cm(-1) A = 0.038200 B = 0.006672 C = 0.006181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.806866 B = 4195.845790 C = 4529.202960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.273 6.273 3 C -0.053 4.053 4 C -0.092 4.092 5 H 0.097 0.903 6 C -0.135 4.135 7 C 0.464 3.536 8 O -0.588 6.588 9 N -0.417 5.417 10 C -0.312 4.312 11 H 0.095 0.905 12 C 0.041 3.959 13 N -0.866 5.866 14 Si 0.916 3.084 15 H -0.284 1.284 16 H -0.275 1.275 17 H -0.273 1.273 18 C 0.129 3.871 19 C -0.135 4.135 20 C -0.226 4.226 21 H 0.096 0.904 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.267 0.733 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 -8.907 -1.407 10.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.048 6.048 3 C -0.202 4.202 4 C -0.114 4.114 5 H 0.115 0.885 6 C -0.193 4.193 7 C 0.251 3.749 8 O -0.473 6.473 9 N -0.135 5.135 10 C -0.440 4.440 11 H 0.113 0.887 12 C -0.164 4.164 13 N -0.503 5.503 14 Si 0.743 3.257 15 H -0.209 1.209 16 H -0.200 1.200 17 H -0.199 1.199 18 C 0.024 3.976 19 C -0.172 4.172 20 C -0.264 4.264 21 H 0.115 0.885 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.791 -9.311 -1.148 10.535 hybrid contribution -0.387 1.855 -0.389 1.934 sum -5.179 -7.457 -1.537 9.208 Atomic orbital electron populations 1.23336 0.95012 1.05883 1.04804 1.86655 1.06545 1.13479 1.98093 1.23255 0.99601 0.91642 1.05692 1.21024 0.92780 0.96541 1.01075 0.88487 1.21695 1.01396 1.00475 0.95719 1.19815 0.84097 0.88969 0.82043 1.90513 1.50036 1.53445 1.53315 1.43057 1.11656 1.05538 1.53210 1.19520 0.92977 0.83202 1.48270 0.88721 1.25210 0.95759 0.99003 0.96420 1.69959 1.00123 1.38191 1.42021 0.86158 0.77232 0.82821 0.79478 1.20935 1.20023 1.19853 1.21043 0.93862 0.91572 0.91143 1.22708 0.95490 0.98409 1.00624 1.23581 1.01155 0.95854 1.05854 0.88516 0.90676 0.90745 0.89433 0.90216 0.91864 0.92535 0.91825 0.92299 0.87878 0.89121 0.89742 0.89403 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 10.76 101.05 1.09 -0.22 16 2 S -0.27 -3.92 21.31 -107.50 -2.29 -6.21 16 3 C -0.05 -0.91 4.82 37.16 0.18 -0.73 16 4 C -0.09 -1.73 2.02 -91.77 -0.19 -1.92 16 5 H 0.10 1.76 5.24 -51.93 -0.27 1.49 16 6 C -0.13 -2.34 8.84 37.16 0.33 -2.01 16 7 C 0.46 11.25 6.70 -10.99 -0.07 11.18 16 8 O -0.59 -16.25 15.94 5.54 0.09 -16.16 16 9 N -0.42 -10.50 2.92 -107.73 -0.31 -10.81 16 10 C -0.31 -8.58 8.79 -14.93 -0.13 -8.71 16 11 H 0.10 2.74 7.51 -52.48 -0.39 2.35 16 12 C 0.04 1.06 4.38 -17.47 -0.08 0.99 16 13 N -0.87 -22.44 10.63 55.50 0.59 -21.85 16 14 Si 0.92 20.52 29.58 -169.99 -5.03 15.49 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 18 C 0.13 2.82 3.16 -67.94 -0.21 2.61 16 19 C -0.13 -2.75 8.23 -26.70 -0.22 -2.97 16 20 C -0.23 -4.09 8.37 -26.70 -0.22 -4.32 16 21 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 24 H 0.09 1.55 8.03 -51.92 -0.42 1.13 16 25 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 26 H 0.06 1.14 7.06 -51.93 -0.37 0.77 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.97 7.36 -51.93 -0.38 0.59 16 29 H 0.27 6.61 8.32 -40.82 -0.34 6.27 16 30 H 0.10 2.31 7.52 -51.93 -0.39 1.92 16 31 H 0.09 2.00 7.59 -51.93 -0.39 1.61 16 32 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.08 1.56 7.83 -51.93 -0.41 1.15 16 LS Contribution 291.20 15.07 4.39 4.39 Total: -1.00 -29.29 291.20 -7.21 -36.50 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.12 Total: 4.76 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 0.47 Total: -6.10 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.27 Total: -32.66 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.09 Total: -16.16 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Atomic # 16 Polarization: -3.92 SS G_CDS: -2.29 Total: -6.21 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.29 -7.21 -36.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343293484.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.310 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds