Wall clock time and date at job start Sun Mar 29 2020 22:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48495 * 109.46979 * 60.00269 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 S 1.81398 * 109.47297 * 180.02562 * 16 14 13 18 18 C 1.81403 * 103.00034 * 180.02562 * 17 16 14 19 19 C 1.53005 * 117.49828 * 243.74724 * 18 17 16 20 20 C 1.53002 * 117.49804 * 175.08716 * 18 17 16 21 21 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 22 22 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 23 23 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 25 25 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 26 26 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 27 27 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 28 28 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 29 29 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 30 30 H 1.08999 * 115.54733 * 29.41766 * 18 17 16 31 31 H 1.09001 * 117.49712 * 359.97438 * 19 18 17 32 32 H 1.08998 * 117.49590 * 145.02272 * 19 18 17 33 33 H 1.09000 * 117.49866 * 214.97738 * 20 18 17 34 34 H 1.08999 * 117.49821 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5326 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 16 -1.6234 3.9885 2.5386 18 6 -1.9034 4.7427 4.1645 19 6 -3.0103 4.1484 5.0378 20 6 -3.2098 5.5118 4.3710 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 5.9548 0.8552 -0.5318 27 1 2.2902 2.1166 1.9978 28 1 0.0991 2.6017 3.4901 29 1 0.7539 4.1436 2.8885 30 1 -1.0128 5.1191 4.6677 31 1 -3.5705 3.3045 4.6351 32 1 -2.8480 4.1343 6.1155 33 1 -3.1788 6.3940 5.0104 34 1 -3.9009 5.5649 3.5297 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450629531.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:37 Heat of formation + Delta-G solvation = -18.427395 kcal Electronic energy + Delta-G solvation = -15400.041634 eV Core-core repulsion = 12845.910940 eV Total energy + Delta-G solvation = -2554.130694 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.19082 -36.87769 -35.30288 -32.52501 -31.71372 -29.50001 -26.95486 -23.04326 -22.65298 -22.34506 -20.75632 -19.58214 -17.86466 -16.87587 -16.30358 -15.89772 -15.48308 -14.91507 -14.20424 -13.87686 -13.27092 -13.14003 -12.70581 -12.50026 -12.23651 -12.04030 -11.81764 -11.62157 -11.21097 -10.92599 -10.74209 -10.67877 -10.44520 -9.92287 -9.90314 -9.61422 -9.30587 -9.06178 -8.36628 -8.15533 -7.53236 -6.60611 -4.24983 1.50121 2.53021 3.12684 3.37983 3.44355 3.45952 3.58715 3.92203 4.40190 4.55575 4.65775 4.71020 5.10450 5.14749 5.17390 5.35395 5.37813 5.43630 5.69557 5.85287 6.06932 6.09548 6.26933 6.67420 6.78890 6.93091 7.03536 7.32496 7.36360 7.60752 8.20094 8.38730 8.65927 8.89919 9.44252 10.80196 Molecular weight = 243.10amu Principal moments of inertia in cm(-1) A = 0.048113 B = 0.005075 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.827930 B = 5516.314365 C = 5681.497658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.248 3.752 4 H 0.043 0.957 5 C -0.618 4.618 6 H 0.061 0.939 7 C 0.040 3.960 8 N -0.898 5.898 9 Si 1.040 2.960 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.279 1.279 13 N -0.697 5.697 14 C 0.517 3.483 15 O -0.531 6.531 16 C -0.131 4.131 17 S -0.130 6.130 18 C -0.162 4.162 19 C -0.163 4.163 20 C -0.146 4.146 21 H 0.048 0.952 22 H 0.051 0.949 23 H 0.031 0.969 24 H 0.069 0.931 25 H 0.050 0.950 26 H 0.269 0.731 27 H 0.393 0.607 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.686 5.700 11.777 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.145 3.855 4 H 0.060 0.940 5 C -0.656 4.656 6 H 0.079 0.921 7 C -0.167 4.167 8 N -0.531 5.531 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.194 1.194 12 H -0.206 1.206 13 N -0.345 5.345 14 C 0.300 3.700 15 O -0.409 6.409 16 C -0.283 4.283 17 S 0.099 5.901 18 C -0.291 4.291 19 C -0.204 4.204 20 C -0.185 4.185 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.226 0.774 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.792 5.084 8.606 17.033 hybrid contribution 1.378 0.668 3.260 3.601 sum -12.414 5.752 11.866 18.111 Atomic orbital electron populations 1.21887 0.97270 0.98953 1.02020 1.22367 0.93872 0.99689 1.01892 1.19088 0.95836 0.88590 0.82015 0.93958 1.22088 0.89638 1.49659 1.04183 0.92074 1.25682 0.97526 0.92289 1.01191 1.70877 1.07065 1.40847 1.34293 0.84121 0.75503 0.77804 0.75850 1.20881 1.19439 1.20552 1.46177 1.14116 1.55921 1.18305 1.19501 0.83155 0.79507 0.87795 1.90707 1.50477 1.59221 1.40467 1.23630 0.98795 1.04107 1.01741 1.87168 1.16830 1.71468 1.14585 1.24292 0.96811 1.08120 0.99919 1.23287 1.01147 0.97319 0.98600 1.22908 0.96919 0.95739 1.02956 0.93292 0.92967 0.95017 0.91214 0.93084 0.92117 0.77391 0.87695 0.87690 0.86662 0.87693 0.88480 0.87996 0.88015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.53 37.15 0.32 -2.63 16 2 C -0.14 -3.11 5.28 -26.73 -0.14 -3.25 16 3 C 0.25 5.88 1.82 -69.08 -0.13 5.76 16 4 H 0.04 1.10 6.26 -51.93 -0.32 0.78 16 5 C -0.62 -16.56 9.01 -34.44 -0.31 -16.87 16 6 H 0.06 1.71 7.96 -52.48 -0.42 1.29 16 7 C 0.04 1.11 5.32 -17.82 -0.09 1.02 16 8 N -0.90 -26.62 13.69 55.43 0.76 -25.86 16 9 Si 1.04 25.07 26.27 -169.99 -4.47 20.61 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.05 5.67 56.52 0.32 -5.73 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.70 -13.78 5.03 -54.94 -0.28 -14.06 16 14 C 0.52 9.73 6.44 -10.99 -0.07 9.66 16 15 O -0.53 -11.78 13.00 5.56 0.07 -11.71 16 16 C -0.13 -1.84 6.42 36.01 0.23 -1.61 16 17 S -0.13 -1.88 21.09 -107.50 -2.27 -4.15 16 18 C -0.16 -1.69 6.35 -26.73 -0.17 -1.86 16 19 C -0.16 -1.42 10.30 -26.69 -0.27 -1.69 16 20 C -0.15 -1.27 10.30 -26.69 -0.27 -1.54 16 21 H 0.05 0.99 5.63 -51.92 -0.29 0.70 16 22 H 0.05 1.12 7.88 -51.93 -0.41 0.71 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 1.63 4.74 -51.92 -0.25 1.38 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.27 7.87 8.73 -40.82 -0.36 7.51 16 27 H 0.39 6.84 8.53 -40.82 -0.35 6.49 16 28 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 29 H 0.10 1.27 8.14 -51.92 -0.42 0.85 16 30 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 291.73 15.07 4.40 4.40 Total: -1.00 -30.80 291.73 -7.77 -38.57 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.08 Total: 5.22 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -0.91 Total: -13.01 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.48 Total: -39.92 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.07 Total: -11.71 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -4.47 Total: 20.61 kcal Atomic # 16 Polarization: -1.88 SS G_CDS: -2.27 Total: -4.15 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.80 -7.77 -38.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450629531.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.142 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds