Wall clock time and date at job start Sun Mar 29 2020 22:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48495 * 109.46979 * 60.00269 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 S 1.81398 * 109.47297 * 180.02562 * 16 14 13 18 18 C 1.81403 * 103.00034 * 180.02562 * 17 16 14 19 19 C 1.53005 * 117.49828 * 243.74724 * 18 17 16 20 20 C 1.53002 * 117.49804 * 175.08716 * 18 17 16 21 21 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 22 22 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 23 23 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 25 25 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 26 26 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 27 27 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 28 28 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 29 29 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 30 30 H 1.08999 * 115.54733 * 29.41766 * 18 17 16 31 31 H 1.09001 * 117.49712 * 359.97438 * 19 18 17 32 32 H 1.08998 * 117.49590 * 145.02272 * 19 18 17 33 33 H 1.09000 * 117.49866 * 214.97738 * 20 18 17 34 34 H 1.08999 * 117.49821 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5326 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 16 -1.6234 3.9885 2.5386 18 6 -1.9034 4.7427 4.1645 19 6 -3.0103 4.1484 5.0378 20 6 -3.2098 5.5118 4.3710 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 5.9548 0.8552 -0.5318 27 1 2.2902 2.1166 1.9978 28 1 0.0991 2.6017 3.4901 29 1 0.7539 4.1436 2.8885 30 1 -1.0128 5.1191 4.6677 31 1 -3.5705 3.3045 4.6351 32 1 -2.8480 4.1343 6.1155 33 1 -3.1788 6.3940 5.0104 34 1 -3.9009 5.5649 3.5297 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450629531.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:37 Heat of formation + Delta-G solvation = -38.513847 kcal Electronic energy + Delta-G solvation = -15400.912648 eV Core-core repulsion = 12845.910940 eV Total energy + Delta-G solvation = -2555.001708 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.78009 -37.59233 -37.09292 -34.50135 -33.42860 -30.86697 -28.80859 -24.35682 -23.80519 -23.30137 -22.38753 -21.27758 -19.83769 -17.99588 -17.71856 -17.23143 -16.84301 -16.23602 -15.58725 -15.13810 -14.91708 -14.70954 -14.44970 -14.31743 -13.82808 -13.31981 -13.14523 -12.69804 -12.49740 -12.44716 -12.30617 -11.98647 -11.80129 -11.45798 -11.40912 -11.13603 -10.88912 -10.84918 -10.49778 -9.86130 -8.81236 -8.60745 -6.46150 0.47388 1.44493 1.49380 1.57208 1.66393 1.68713 2.39495 2.45872 2.75866 2.99753 3.78649 3.84582 3.97993 4.04213 4.07159 4.25305 4.30778 4.39411 4.54079 4.74098 4.80415 4.84005 5.02630 5.09143 5.19718 5.21761 5.28517 5.53154 5.61509 5.66063 5.99482 6.51151 6.76359 7.25947 7.37914 8.58753 Molecular weight = 243.10amu Principal moments of inertia in cm(-1) A = 0.048113 B = 0.005075 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.827930 B = 5516.314365 C = 5681.497658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.136 4.136 3 C 0.252 3.748 4 H 0.021 0.979 5 C -0.613 4.613 6 H 0.042 0.958 7 C -0.003 4.003 8 N -0.928 5.928 9 Si 1.069 2.931 10 H -0.282 1.282 11 H -0.244 1.244 12 H -0.276 1.276 13 N -0.698 5.698 14 C 0.515 3.485 15 O -0.565 6.565 16 C -0.113 4.113 17 S -0.195 6.195 18 C -0.164 4.164 19 C -0.153 4.153 20 C -0.140 4.140 21 H 0.048 0.952 22 H 0.038 0.962 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.258 0.742 27 H 0.405 0.595 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.238 6.020 13.448 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.175 4.175 3 C 0.147 3.853 4 H 0.039 0.961 5 C -0.651 4.651 6 H 0.060 0.940 7 C -0.204 4.204 8 N -0.563 5.563 9 Si 0.892 3.108 10 H -0.208 1.208 11 H -0.168 1.168 12 H -0.201 1.201 13 N -0.347 5.347 14 C 0.300 3.700 15 O -0.445 6.445 16 C -0.264 4.264 17 S 0.034 5.966 18 C -0.292 4.292 19 C -0.194 4.194 20 C -0.180 4.180 21 H 0.067 0.933 22 H 0.057 0.943 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.240 0.760 28 H 0.150 0.850 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.115 0.885 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.352 5.411 10.321 19.274 hybrid contribution 1.828 0.648 2.843 3.441 sum -13.525 6.059 13.164 19.822 Atomic orbital electron populations 1.21760 0.95573 1.00363 1.01347 1.22254 0.95264 0.98289 1.01646 1.18768 0.93485 0.89722 0.83282 0.96094 1.22283 0.91431 1.48133 1.03256 0.94020 1.26761 0.97686 0.92100 1.03889 1.70975 1.08035 1.43269 1.34053 0.83742 0.75206 0.78604 0.73265 1.20774 1.16847 1.20148 1.45990 1.15158 1.56185 1.17411 1.20191 0.82024 0.78630 0.89113 1.90693 1.51334 1.60266 1.42231 1.23459 0.98684 1.04995 0.99254 1.87388 1.17632 1.72485 1.19102 1.24310 0.98198 1.09266 0.97470 1.23358 0.99488 0.96982 0.99536 1.23046 0.95306 0.96746 1.02864 0.93318 0.94313 0.92487 0.92279 0.92505 0.93214 0.76013 0.84995 0.85435 0.85103 0.88518 0.86165 0.85639 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 8.53 71.98 0.61 -4.59 16 2 C -0.14 -5.88 5.28 30.59 0.16 -5.72 16 3 C 0.25 11.83 1.82 44.24 0.08 11.91 16 4 H 0.02 1.09 6.26 -2.39 -0.01 1.08 16 5 C -0.61 -33.06 9.01 25.60 0.23 -32.83 16 6 H 0.04 2.36 7.96 -2.91 -0.02 2.34 16 7 C 0.00 -0.19 5.32 84.66 0.45 0.26 16 8 N -0.93 -55.91 13.69 21.45 0.29 -55.61 16 9 Si 1.07 50.44 26.27 68.60 1.80 52.24 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.24 -10.48 5.67 99.48 0.56 -9.92 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 13 N -0.70 -26.87 5.03 -446.11 -2.24 -29.11 16 14 C 0.51 18.71 6.44 87.66 0.56 19.28 16 15 O -0.57 -24.81 13.00 -3.03 -0.04 -24.84 16 16 C -0.11 -2.91 6.42 71.24 0.46 -2.45 16 17 S -0.20 -5.37 21.09 -56.49 -1.19 -6.56 16 18 C -0.16 -2.96 6.35 30.60 0.19 -2.76 16 19 C -0.15 -2.20 10.30 30.62 0.32 -1.88 16 20 C -0.14 -2.05 10.30 30.62 0.32 -1.73 16 21 H 0.05 1.89 5.63 -2.38 -0.01 1.88 16 22 H 0.04 1.60 7.88 -2.39 -0.02 1.58 16 23 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.06 2.67 4.74 -2.38 -0.01 2.66 16 25 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.26 15.55 8.73 -92.71 -0.81 14.74 16 27 H 0.40 13.56 8.53 -92.71 -0.79 12.77 16 28 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.13 2.71 8.14 -2.39 -0.02 2.70 16 30 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -66.90 291.73 2.13 -64.77 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.12 Total: 19.64 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: 3.38 Total: -20.52 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -1.95 Total: -84.72 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.04 Total: -24.84 kcal Atomic # 14 Polarization: 50.44 SS G_CDS: 1.80 Total: 52.24 kcal Atomic # 16 Polarization: -5.37 SS G_CDS: -1.19 Total: -6.56 kcal Total: -66.90 2.13 -64.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450629531.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.260 kcal (2) G-P(sol) polarization free energy of solvation -66.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds