Wall clock time and date at job start Sun Mar 29 2020 22:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46492 * 109.46977 * 2 1 4 4 C 1.36709 * 120.00241 * 264.54698 * 3 2 1 5 5 H 1.08006 * 120.00318 * 146.24801 * 4 3 2 6 6 C 1.39118 * 119.99894 * 326.24603 * 4 3 2 7 7 N 1.31323 * 120.00324 * 337.32717 * 6 4 3 8 8 Si 1.86807 * 120.00121 * 157.32781 * 6 4 3 9 9 H 1.48489 * 109.47379 * 89.99772 * 8 6 4 10 10 H 1.48501 * 109.47205 * 210.00326 * 8 6 4 11 11 H 1.48502 * 109.46942 * 329.99742 * 8 6 4 12 12 C 1.34787 * 119.99819 * 84.54720 * 3 2 1 13 13 O 1.21755 * 119.99688 * 179.97438 * 12 3 2 14 14 C 1.43193 * 119.99727 * 0.02562 * 12 3 2 15 15 C 3.52459 * 89.54093 * 75.26520 * 2 1 3 16 16 C 4.66576 * 85.35306 * 86.78703 * 2 1 3 17 17 C 1.39885 * 120.17131 * 284.38733 * 16 15 14 18 18 C 1.37877 * 119.81756 * 179.97438 * 17 16 15 19 19 C 1.38409 * 120.18013 * 359.97438 * 18 17 16 20 20 C 1.38417 * 120.35123 * 0.04330 * 19 18 17 21 21 C 1.37882 * 120.17426 * 359.95303 * 20 19 18 22 22 H 1.08993 * 109.47319 * 59.99342 * 1 2 3 23 23 H 1.09000 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46745 * 299.99487 * 1 2 3 25 25 H 1.08998 * 109.46286 * 240.00117 * 2 1 3 26 26 H 1.08997 * 109.46617 * 120.00608 * 2 1 3 27 27 H 0.97002 * 120.00348 * 180.02562 * 7 6 4 28 28 H 1.07997 * 120.08442 * 359.70730 * 17 16 15 29 29 H 1.08001 * 119.90803 * 179.97438 * 18 17 16 30 30 H 1.07997 * 119.82749 * 179.97438 * 19 18 17 31 31 H 1.07994 * 119.91153 * 179.97438 * 20 19 18 32 32 H 1.08000 * 120.08690 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3523 1.9882 -1.1785 5 1 2.1861 3.0477 -1.3064 6 6 2.9062 1.2411 -2.2132 7 7 3.5144 0.1070 -1.9517 8 14 2.7849 1.8513 -3.9746 9 1 3.9639 2.6980 -4.2875 10 1 2.7499 0.6900 -4.8995 11 1 1.5441 2.6509 -4.1371 12 6 2.1384 2.0535 1.1620 13 8 2.5446 3.2012 1.1620 14 6 1.7891 1.4175 2.3965 15 6 1.5018 0.8964 3.4086 16 6 1.1521 0.2606 4.6431 17 6 1.2038 0.9782 5.8428 18 6 0.8650 0.3589 7.0272 19 6 0.4740 -0.9688 7.0312 20 6 0.4205 -1.6857 5.8483 21 6 0.7561 -1.0809 4.6556 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.9009 -0.4137 -2.6731 28 1 1.5125 2.0131 5.8417 29 1 0.9049 0.9114 7.9543 30 1 0.2102 -1.4483 7.9622 31 1 0.1148 -2.7214 5.8597 32 1 0.7143 -1.6417 3.7335 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701212442.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:45 Heat of formation + Delta-G solvation = 27.180190 kcal Electronic energy + Delta-G solvation = -16101.616169 eV Core-core repulsion = 13414.019217 eV Total energy + Delta-G solvation = -2687.596952 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.55654 -40.01021 -37.09449 -35.09466 -34.02473 -31.91199 -31.39434 -31.31882 -27.59508 -25.01780 -24.04066 -23.41784 -22.61019 -19.53061 -18.84155 -18.11443 -17.29888 -16.77535 -16.33893 -15.93051 -15.83678 -15.15195 -14.72486 -14.64436 -14.35805 -14.18527 -13.73303 -13.68248 -12.97595 -12.81412 -12.53896 -12.39049 -12.31250 -12.10278 -12.09611 -11.94615 -11.53809 -11.00880 -10.89048 -9.92800 -9.72676 -9.51605 -8.49733 -6.17281 -0.29944 0.45094 1.10954 1.31083 1.42889 1.46439 1.57166 2.21497 2.49429 2.64725 2.88523 3.16166 3.37357 4.03083 4.05047 4.17766 4.24224 4.31875 4.49678 4.51327 4.61766 4.70069 4.90188 5.00955 5.11132 5.15005 5.33837 5.42524 5.45574 5.51551 5.54649 5.99892 6.03674 6.22198 6.36094 6.95619 7.19842 7.82496 8.53431 Molecular weight = 243.10amu Principal moments of inertia in cm(-1) A = 0.044223 B = 0.004897 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.002428 B = 5716.554073 C = 6081.509648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.094 3.906 3 N -0.417 5.417 4 C -0.352 4.352 5 H 0.075 0.925 6 C 0.010 3.990 7 N -0.877 5.877 8 Si 0.995 3.005 9 H -0.274 1.274 10 H -0.260 1.260 11 H -0.264 1.264 12 C 0.526 3.474 13 O -0.626 6.626 14 C -0.197 4.197 15 C -0.075 4.075 16 C -0.022 4.022 17 C -0.105 4.105 18 C -0.119 4.119 19 C -0.099 4.099 20 C -0.118 4.118 21 C -0.098 4.098 22 H 0.051 0.949 23 H 0.091 0.909 24 H 0.040 0.960 25 H 0.103 0.897 26 H 0.053 0.947 27 H 0.282 0.718 28 H 0.123 0.877 29 H 0.157 0.843 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.036 -8.955 12.989 17.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 N -0.132 5.132 4 C -0.480 4.480 5 H 0.093 0.907 6 C -0.195 4.195 7 N -0.513 5.513 8 Si 0.816 3.184 9 H -0.200 1.200 10 H -0.184 1.184 11 H -0.188 1.188 12 C 0.317 3.683 13 O -0.516 6.516 14 C -0.200 4.200 15 C -0.078 4.078 16 C -0.022 4.022 17 C -0.123 4.123 18 C -0.137 4.137 19 C -0.116 4.116 20 C -0.136 4.136 21 C -0.116 4.116 22 H 0.070 0.930 23 H 0.110 0.890 24 H 0.059 0.941 25 H 0.121 0.879 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.141 0.859 29 H 0.175 0.825 30 H 0.180 0.820 31 H 0.177 0.823 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.741 -8.608 12.810 17.266 hybrid contribution 0.433 0.685 -1.039 1.318 sum -7.309 -7.923 11.770 15.960 Atomic orbital electron populations 1.22063 0.94715 1.02882 1.01150 1.21772 0.94586 0.82862 1.03630 1.43679 1.52456 1.13048 1.03993 1.19595 1.42831 0.95681 0.89857 0.90694 1.26323 0.92471 0.96156 1.04532 1.69949 1.30321 1.15732 1.35288 0.84950 0.79182 0.78524 0.75749 1.19955 1.18425 1.18780 1.15485 0.84090 0.86847 0.81833 1.90625 1.53993 1.19895 1.87129 1.21042 1.03717 0.99746 0.95496 1.19860 0.96549 0.97637 0.93771 1.16324 1.04316 0.94475 0.87072 1.21500 0.98909 1.00189 0.91718 1.21432 0.98702 0.95910 0.97617 1.21811 0.96500 0.93905 0.99433 1.21466 0.99229 1.01583 0.91281 1.21504 0.97550 0.92270 1.00323 0.93008 0.88991 0.94068 0.87933 0.92811 0.90753 0.85882 0.82544 0.81957 0.82306 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.70 10.16 71.98 0.73 -4.97 16 2 C 0.09 4.41 5.43 86.38 0.47 4.87 16 3 N -0.42 -23.35 2.55 -643.96 -1.64 -24.99 16 4 C -0.35 -20.62 8.97 84.14 0.75 -19.87 16 5 H 0.08 4.63 7.70 -2.91 -0.02 4.61 16 6 C 0.01 0.52 4.91 84.98 0.42 0.94 16 7 N -0.88 -46.96 11.35 21.69 0.25 -46.71 16 8 Si 0.99 41.34 29.61 68.60 2.03 43.37 16 9 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 10 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 11 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 12 C 0.53 30.54 7.44 85.48 0.64 31.17 16 13 O -0.63 -40.94 16.91 -4.52 -0.08 -41.02 16 14 C -0.20 -9.64 11.28 30.01 0.34 -9.30 16 15 C -0.07 -3.05 13.25 30.02 0.40 -2.65 16 16 C -0.02 -0.67 5.75 -21.24 -0.12 -0.79 16 17 C -0.10 -2.68 9.77 22.58 0.22 -2.46 16 18 C -0.12 -2.08 10.03 22.22 0.22 -1.86 16 19 C -0.10 -1.43 10.04 22.35 0.22 -1.20 16 20 C -0.12 -1.99 10.03 22.23 0.22 -1.77 16 21 C -0.10 -2.41 9.77 22.58 0.22 -2.19 16 22 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 24 H 0.04 1.57 7.65 -2.38 -0.02 1.55 16 25 H 0.10 5.05 5.35 -2.39 -0.01 5.04 16 26 H 0.05 2.41 7.11 -2.39 -0.02 2.39 16 27 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 28 H 0.12 3.15 8.06 -2.91 -0.02 3.13 16 29 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 30 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 31 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 32 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -73.83 291.25 6.42 -67.42 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.12 Total: 12.01 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 4.73 Total: -10.08 kcal Atomic # 7 Polarization: -70.31 SS G_CDS: -1.40 Total: -71.70 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -0.08 Total: -41.02 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -73.83 6.42 -67.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701212442.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.596 kcal (2) G-P(sol) polarization free energy of solvation -73.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds