Wall clock time and date at job start Sun Mar 29 2020 22:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 O 1.21610 * 119.99953 * 92.91375 * 3 2 1 5 5 N 1.34781 * 119.99554 * 272.63642 * 3 2 1 6 6 C 1.46506 * 119.99370 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.47024 * 35.00663 * 6 5 3 8 8 C 1.53007 * 109.46738 * 155.00494 * 6 5 3 9 9 C 1.50698 * 109.46927 * 295.00179 * 8 6 5 10 10 H 1.08005 * 120.00090 * 359.97438 * 9 8 6 11 11 C 1.37875 * 119.99941 * 180.02562 * 9 8 6 12 12 N 1.31515 * 119.99989 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99958 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46819 * 60.00333 * 13 11 9 15 15 H 1.48499 * 109.46934 * 179.97438 * 13 11 9 16 16 H 1.48491 * 109.47388 * 300.00266 * 13 11 9 17 17 C 1.50702 * 109.47014 * 275.00180 * 6 5 3 18 18 C 1.38236 * 120.00050 * 319.72716 * 17 6 5 19 19 C 1.38234 * 119.99537 * 179.78972 * 18 17 6 20 20 C 1.38241 * 120.00071 * 0.44182 * 19 18 17 21 21 C 1.38231 * 119.99761 * 359.81466 * 20 19 18 22 22 C 1.38231 * 120.00610 * 359.97438 * 21 20 19 23 23 H 4.39218 * 13.43037 * 0.02562 * 4 2 1 24 24 H 0.96990 * 120.00436 * 0.02562 * 5 3 2 25 25 H 1.08997 * 109.46807 * 54.99896 * 8 6 5 26 26 H 1.08997 * 109.46639 * 175.00119 * 8 6 5 27 27 H 0.96999 * 119.99770 * 179.97438 * 12 11 9 28 28 H 1.07995 * 120.00057 * 0.02562 * 18 17 6 29 29 H 1.07999 * 120.00355 * 180.27740 * 19 18 17 30 30 H 1.07999 * 119.99752 * 179.83167 * 20 19 18 31 31 H 1.08003 * 119.99492 * 179.97438 * 21 20 19 32 32 H 1.07996 * 120.00562 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 8 3.2140 0.0544 -1.0518 5 7 3.2798 -0.0528 1.1661 6 6 4.7449 -0.0527 1.1660 7 1 5.1081 0.5748 0.3521 8 6 5.2548 0.4964 2.5000 9 6 4.8560 1.9436 2.6329 10 1 4.2952 2.4238 1.8446 11 6 5.2078 2.6549 3.7604 12 7 5.8910 2.0703 4.7201 13 14 4.7140 4.4489 3.9248 14 1 3.2340 4.5613 3.8771 15 1 5.2088 4.9818 5.2196 16 1 5.3059 5.2296 2.8090 17 6 5.2473 -1.4609 0.9774 18 6 4.6166 -2.5113 1.6176 19 6 5.0748 -3.8035 1.4411 20 6 6.1693 -4.0443 0.6317 21 6 6.8032 -2.9932 -0.0042 22 6 6.3423 -1.7015 0.1688 23 1 -1.0500 0.0005 0.0001 24 1 2.7949 -0.0920 2.0051 25 1 4.8202 -0.0769 3.3188 26 1 6.3411 0.4142 2.5352 27 1 6.1388 2.5708 5.5131 28 1 3.7636 -2.3228 2.2526 29 1 4.5794 -4.6247 1.9377 30 1 6.5290 -5.0535 0.4960 31 1 7.6585 -3.1813 -0.6362 32 1 6.8373 -0.8804 -0.3284 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754084469.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:29 Heat of formation + Delta-G solvation = 37.631734 kcal Electronic energy + Delta-G solvation = -16517.226408 eV Core-core repulsion = 13830.082669 eV Total energy + Delta-G solvation = -2687.143739 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.66171 -38.39208 -35.24946 -33.13154 -32.66723 -31.00614 -30.45825 -28.82651 -25.29886 -23.24671 -22.29522 -21.94046 -19.89914 -18.89068 -16.90198 -16.31293 -16.17447 -15.62886 -14.95086 -14.55458 -14.30117 -14.24422 -13.37115 -13.04426 -12.79430 -12.54916 -12.12210 -11.68472 -11.16409 -11.02451 -10.84677 -10.75567 -10.71417 -10.61099 -10.48062 -9.84087 -9.80780 -9.33977 -8.59014 -8.50458 -8.47092 -8.21103 -6.10777 -4.14679 1.75402 1.79379 1.91928 2.60008 3.28226 3.33155 3.36321 3.58603 3.93207 4.20732 4.38649 4.77309 5.25265 5.25846 5.26309 5.35719 5.51938 5.75899 5.89481 5.92312 6.15374 6.33264 6.41516 6.53795 6.78519 6.83320 6.84398 7.07766 7.35012 7.38941 7.46124 7.57466 7.85399 7.99839 8.22910 8.59508 8.90836 9.50599 10.99619 Molecular weight = 243.10amu Principal moments of inertia in cm(-1) A = 0.016347 B = 0.008205 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.482931 B = 3411.780786 C = 4610.979448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.211 4.211 3 C 0.619 3.381 4 O -0.534 6.534 5 N -0.685 5.685 6 C 0.184 3.816 7 H 0.091 0.909 8 C 0.024 3.976 9 C -0.524 4.524 10 H 0.058 0.942 11 C 0.061 3.939 12 N -0.892 5.892 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.074 4.074 18 C -0.108 4.108 19 C -0.125 4.125 20 C -0.134 4.134 21 C -0.123 4.123 22 C -0.107 4.107 23 H 0.229 0.771 24 H 0.405 0.595 25 H 0.026 0.974 26 H 0.037 0.963 27 H 0.263 0.737 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.367 -8.851 -5.265 11.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.214 4.214 3 C 0.405 3.595 4 O -0.413 6.413 5 N -0.333 5.333 6 C 0.080 3.920 7 H 0.109 0.891 8 C -0.013 4.013 9 C -0.562 4.562 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.530 5.530 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.076 4.076 18 C -0.126 4.126 19 C -0.143 4.143 20 C -0.152 4.152 21 C -0.141 4.141 22 C -0.125 4.125 23 H 0.246 0.754 24 H 0.240 0.760 25 H 0.044 0.956 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.795 -8.765 -5.807 11.556 hybrid contribution -0.665 0.981 0.654 1.353 sum -5.459 -7.784 -5.153 10.814 Atomic orbital electron populations 1.25129 0.95805 0.94659 0.98193 1.21881 0.93769 1.03815 1.01968 1.14901 0.82584 0.77323 0.84726 1.90815 1.68744 1.50337 1.31398 1.45885 1.07909 1.71866 1.07641 1.20352 0.77571 0.90786 1.03270 0.89124 1.19402 0.97494 0.95937 0.88479 1.21108 1.35807 0.95558 1.03736 0.92390 1.24983 0.94967 0.98333 0.95790 1.69947 1.38232 1.36769 1.08054 0.86639 0.78909 0.85070 0.77310 1.20246 1.21267 1.20159 1.20522 0.95379 0.96332 0.95317 1.20921 1.00028 0.92306 0.99357 1.21045 0.97279 0.96614 0.99352 1.21009 0.96903 0.98571 0.98709 1.21046 0.99944 0.92896 1.00175 1.21024 0.96559 0.96825 0.98123 0.75408 0.75970 0.95585 0.94459 0.92764 0.86524 0.86673 0.86781 0.86520 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 19.25 29.55 0.57 -0.84 16 2 C -0.21 -3.37 13.61 -38.84 -0.53 -3.90 16 3 C 0.62 11.89 7.61 -14.33 -0.11 11.78 16 4 O -0.53 -11.95 16.74 5.27 0.09 -11.86 16 5 N -0.68 -12.82 4.03 -57.37 -0.23 -13.05 16 6 C 0.18 3.77 2.12 -69.07 -0.15 3.62 16 7 H 0.09 2.01 7.43 -51.93 -0.39 1.62 16 8 C 0.02 0.58 4.49 -27.88 -0.13 0.45 16 9 C -0.52 -13.86 8.84 -34.44 -0.30 -14.17 16 10 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 13 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 C -0.07 -1.39 4.91 -104.62 -0.51 -1.90 16 18 C -0.11 -1.83 9.32 -39.58 -0.37 -2.20 16 19 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 20 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 21 C -0.12 -1.84 10.05 -39.59 -0.40 -2.24 16 22 C -0.11 -1.86 9.67 -39.58 -0.38 -2.24 16 23 H 0.23 1.51 7.80 -54.09 -0.42 1.09 16 24 H 0.41 6.96 8.57 -40.82 -0.35 6.61 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.12 1.85 7.73 -52.49 -0.41 1.44 16 29 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.12 2.01 8.04 -52.49 -0.42 1.58 16 LS Contribution 296.42 15.07 4.47 4.47 Total: -1.00 -31.46 296.42 -6.80 -38.26 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -3.64 Total: 5.50 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -3.20 Total: -14.61 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.51 Total: -37.77 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.46 -6.80 -38.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754084469.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.890 kcal (2) G-P(sol) polarization free energy of solvation -31.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds