Wall clock time and date at job start Sun Mar 29 2020 23:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48502 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47000 * 299.99567 * 3 2 1 6 6 H 1.48501 * 109.47339 * 59.99685 * 3 2 1 7 7 C 1.37876 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00209 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99997 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.47011 * 180.02562 * 9 7 2 11 11 O 1.21274 * 120.00413 * 0.27295 * 10 9 7 12 12 N 1.34784 * 119.99635 * 180.02562 * 10 9 7 13 13 C 1.46499 * 119.99971 * 179.97438 * 12 10 9 14 14 C 1.53783 * 113.61722 * 254.13839 * 13 12 10 15 15 C 1.53949 * 87.02014 * 220.04588 * 14 13 12 16 16 C 1.52997 * 113.53838 * 270.80765 * 15 14 13 17 17 O 1.42894 * 109.47321 * 277.49563 * 16 15 14 18 18 C 1.52997 * 113.74398 * 139.93991 * 15 14 13 19 19 O 1.42900 * 109.47387 * 82.40089 * 18 15 14 20 20 C 1.53781 * 113.61562 * 156.52736 * 13 12 10 21 21 H 0.96998 * 119.99718 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.46877 * 59.99988 * 9 7 2 23 23 H 1.09002 * 109.46993 * 300.00334 * 9 7 2 24 24 H 0.96999 * 120.00044 * 0.02562 * 12 10 9 25 25 H 1.09001 * 112.84942 * 25.33046 * 13 12 10 26 26 H 1.09003 * 113.61223 * 334.56953 * 14 13 12 27 27 H 1.09001 * 113.61825 * 105.46860 * 14 13 12 28 28 H 1.09004 * 109.47025 * 37.49762 * 16 15 14 29 29 H 1.09010 * 109.47177 * 157.49391 * 16 15 14 30 30 H 0.96702 * 114.00239 * 179.97438 * 17 16 15 31 31 H 1.09000 * 109.47915 * 202.40448 * 18 15 14 32 32 H 1.09007 * 109.47393 * 322.40376 * 18 15 14 33 33 H 0.96699 * 114.00338 * 180.02562 * 19 18 15 34 34 H 1.08999 * 113.61210 * 254.53117 * 20 13 12 35 35 H 1.08991 * 113.60958 * 25.35181 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0018 11 8 3.4226 -3.4231 0.0076 12 7 1.7809 -4.9153 0.0015 13 6 2.7329 -6.0289 0.0022 14 6 2.8414 -6.7474 -1.3531 15 6 2.9107 -8.0642 -0.5586 16 6 4.3341 -8.4699 -0.1711 17 8 4.9562 -9.1354 -1.2720 18 6 2.1187 -9.2091 -1.1933 19 8 2.9038 -9.8202 -2.2190 20 6 2.1504 -7.3370 0.5630 21 1 -0.4849 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8903 24 1 0.8273 -5.0925 0.0001 25 1 3.6977 -5.7607 0.4326 26 1 1.9467 -6.6555 -1.9689 27 1 3.7569 -6.5164 -1.8978 28 1 4.9081 -7.5798 0.0868 29 1 4.2997 -9.1413 0.6870 30 1 5.8633 -9.4212 -1.0972 31 1 1.8765 -9.9498 -0.4312 32 1 1.1975 -8.8179 -1.6254 33 1 2.4631 -10.5557 -2.6662 34 1 2.5089 -7.5811 1.5630 35 1 1.0664 -7.4059 0.4733 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143203488.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:30 Heat of formation + Delta-G solvation = -122.596988 kcal Electronic energy + Delta-G solvation = -17620.182132 eV Core-core repulsion = 14618.781434 eV Total energy + Delta-G solvation = -3001.400698 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 243.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.26353 -38.17553 -36.14609 -35.98516 -32.90212 -32.82833 -29.19918 -27.79369 -26.04737 -25.78103 -23.78486 -21.44878 -19.73690 -18.53829 -17.56023 -16.91301 -16.43129 -16.05381 -15.73771 -15.33372 -14.60161 -14.46254 -14.15453 -13.82637 -13.53314 -12.77417 -12.62559 -12.41354 -12.12847 -11.99226 -11.53814 -11.24770 -11.06644 -10.71266 -10.68600 -10.52070 -10.40785 -9.93665 -9.87625 -9.75557 -9.23556 -8.60833 -8.45693 -8.36829 -6.04435 -4.03592 3.34640 3.41566 3.50312 3.68293 3.83896 3.92935 4.25418 4.45613 4.52235 4.85779 4.90935 5.01965 5.11520 5.27814 5.30464 5.34151 5.42589 5.56292 5.63927 5.71504 5.76739 6.11507 6.18679 6.20036 6.51194 7.09027 7.21952 7.34731 7.66851 7.70914 7.97812 8.08349 8.46898 9.07908 9.26079 9.61639 11.08108 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.052719 B = 0.004238 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.987586 B = 6605.570101 C = 6829.527477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.054 3.946 3 Si 0.900 3.100 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.075 0.925 9 C 0.003 3.997 10 C 0.515 3.485 11 O -0.546 6.546 12 N -0.739 5.739 13 C 0.125 3.875 14 C -0.133 4.133 15 C -0.081 4.081 16 C 0.103 3.897 17 O -0.541 6.541 18 C 0.099 3.901 19 O -0.541 6.541 20 C -0.131 4.131 21 H 0.261 0.739 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.396 0.604 25 H 0.109 0.891 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.366 0.634 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.364 0.636 34 H 0.076 0.924 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.346 -20.293 -0.038 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.147 4.147 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.094 0.906 9 C -0.036 4.036 10 C 0.305 3.695 11 O -0.422 6.422 12 N -0.391 5.391 13 C 0.019 3.981 14 C -0.172 4.172 15 C -0.082 4.082 16 C 0.024 3.976 17 O -0.344 6.344 18 C 0.021 3.979 19 O -0.343 6.343 20 C -0.169 4.169 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.230 0.770 25 H 0.127 0.873 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.211 0.789 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.208 0.792 34 H 0.095 0.905 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.927 -19.376 -0.109 19.597 hybrid contribution -0.132 0.237 0.174 0.322 sum 2.795 -19.139 0.065 19.342 Atomic orbital electron populations 1.69970 1.06047 1.26764 1.51385 1.25011 0.94908 0.99495 0.95259 0.86382 0.80348 0.83003 0.77446 1.19478 1.21012 1.21027 1.21221 0.94309 0.89146 1.49810 0.90644 1.19254 0.94202 0.90689 0.99434 1.22036 0.91088 0.83559 0.72806 1.90525 1.18091 1.84659 1.48930 1.46280 1.09099 1.05796 1.77956 1.22306 0.94953 0.84819 0.96046 1.23525 1.03063 0.93281 0.97362 1.21722 0.94763 0.94234 0.97497 1.21774 0.91845 0.95396 0.88535 1.86771 1.30665 1.78515 1.38435 1.21946 0.92511 0.93655 0.89818 1.86815 1.44145 1.51231 1.52151 1.23366 1.00575 0.95207 0.97786 0.92995 0.93481 0.93467 0.77032 0.87296 0.89776 0.90801 0.93437 0.94075 0.78926 0.94348 0.93902 0.79184 0.90528 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.51 -14.87 8.92 -34.44 -0.31 -15.18 16 8 H 0.08 2.32 6.75 -52.49 -0.35 1.96 16 9 C 0.00 0.09 5.46 -29.03 -0.16 -0.07 16 10 C 0.51 11.81 7.82 -10.98 -0.09 11.73 16 11 O -0.55 -14.42 15.08 5.56 0.08 -14.34 16 12 N -0.74 -12.62 5.36 -53.02 -0.28 -12.90 16 13 C 0.12 1.84 3.86 -67.12 -0.26 1.58 16 14 C -0.13 -1.86 7.01 -25.83 -0.18 -2.04 16 15 C -0.08 -0.93 1.08 -153.61 -0.17 -1.09 16 16 C 0.10 1.13 6.39 37.16 0.24 1.37 16 17 O -0.54 -6.37 11.11 -58.79 -0.65 -7.02 16 18 C 0.10 1.01 6.52 37.16 0.24 1.25 16 19 O -0.54 -6.10 11.11 -58.79 -0.65 -6.76 16 20 C -0.13 -1.40 6.98 -25.92 -0.18 -1.58 16 21 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 22 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 23 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.40 5.66 8.71 -40.82 -0.36 5.30 16 25 H 0.11 1.81 7.01 -51.93 -0.36 1.44 16 26 H 0.08 1.15 7.98 -51.93 -0.41 0.74 16 27 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 28 H 0.05 0.54 7.34 -51.93 -0.38 0.16 16 29 H 0.04 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.37 2.72 9.12 45.56 0.42 3.13 16 31 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.04 0.40 7.96 -51.92 -0.41 -0.01 16 33 H 0.36 2.48 9.12 45.56 0.42 2.89 16 34 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 35 H 0.09 0.85 8.07 -51.93 -0.42 0.44 16 LS Contribution 295.45 15.07 4.45 4.45 Total: -1.00 -35.74 295.45 -5.83 -41.57 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -3.54 Total: 6.17 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -0.96 Total: -2.59 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.45 Total: -38.80 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -1.22 Total: -28.11 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -35.74 -5.83 -41.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203488.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.027 kcal (2) G-P(sol) polarization free energy of solvation -35.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds