Wall clock time and date at job start Sun Mar 29 2020 22:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47196 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.43198 * 179.97438 * 154.29354 * 3 2 1 5 5 O 1.21622 * 120.00131 * 56.35911 * 4 3 2 6 6 N 1.34776 * 119.99825 * 236.35143 * 4 3 2 7 7 C 1.39837 * 120.00037 * 185.28144 * 6 4 3 8 8 C 1.38894 * 120.07329 * 213.32061 * 7 6 4 9 9 C 1.38108 * 119.92727 * 180.02562 * 8 7 6 10 10 C 1.38287 * 120.07115 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.92425 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47252 * 90.00329 * 11 10 9 13 13 H 1.07994 * 119.99980 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00048 * 180.27516 * 12 11 10 15 15 N 1.31518 * 119.99743 * 359.72504 * 14 12 11 16 16 Si 1.86798 * 120.00027 * 179.72347 * 14 12 11 17 17 H 1.48501 * 109.46909 * 60.00067 * 16 14 12 18 18 H 1.48498 * 109.47182 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46941 * 299.99842 * 16 14 12 20 20 C 1.38282 * 120.14587 * 0.25921 * 10 9 8 21 21 C 1.38104 * 120.07384 * 359.44438 * 20 10 9 22 22 H 1.09007 * 109.46541 * 149.35357 * 1 2 3 23 23 H 1.08998 * 109.47056 * 269.34919 * 1 2 3 24 24 H 1.09001 * 109.47648 * 29.35560 * 1 2 3 25 25 H 0.96998 * 120.00556 * 5.28044 * 6 4 3 26 26 H 1.08001 * 120.03508 * 359.97438 * 8 7 6 27 27 H 1.07994 * 119.96196 * 179.97438 * 9 8 7 28 28 H 1.08999 * 109.47415 * 329.99957 * 11 10 9 29 29 H 1.09004 * 109.47088 * 210.00576 * 11 10 9 30 30 H 0.97002 * 119.99943 * 180.02562 * 15 14 12 31 31 H 1.08006 * 119.95933 * 179.70448 * 20 10 9 32 32 H 1.08006 * 120.03958 * 180.25573 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0017 -0.0003 5 8 4.6864 -0.5812 -0.8773 6 7 4.7515 0.6491 0.9712 7 6 6.1453 0.7445 0.9114 8 6 6.8937 0.7453 2.0814 9 6 8.2701 0.8403 2.0188 10 6 8.9031 0.9349 0.7930 11 6 10.4051 1.0389 0.7285 12 6 11.0013 -0.3427 0.6469 13 1 10.3571 -1.2094 0.6426 14 6 12.3696 -0.5005 0.5840 15 7 13.1542 0.5550 0.5898 16 14 13.1089 -2.2134 0.4907 17 1 12.6120 -2.9012 -0.7281 18 1 14.5892 -2.1111 0.4319 19 1 12.7132 -2.9895 1.6932 20 6 8.1605 0.9403 -0.3735 21 6 6.7842 0.8395 -0.3182 22 1 -0.3633 -0.8842 -0.5239 23 1 -0.3633 -0.0117 1.0276 24 1 -0.3634 0.8957 -0.5038 25 1 4.2694 1.0488 1.7120 26 1 6.3999 0.6727 3.0391 27 1 8.8526 0.8414 2.9282 28 1 10.7733 1.5413 1.6231 29 1 10.6922 1.6113 -0.1536 30 1 14.1168 0.4440 0.5452 31 1 8.6577 1.0192 -1.3291 32 1 6.2051 0.8396 -1.2298 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178220435.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:14 Heat of formation + Delta-G solvation = 11.873782 kcal Electronic energy + Delta-G solvation = -15640.244801 eV Core-core repulsion = 12951.984113 eV Total energy + Delta-G solvation = -2688.260688 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.100 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.60498 -39.62354 -36.39563 -35.34589 -34.93710 -32.34941 -31.83092 -29.97556 -28.36483 -25.58253 -24.06553 -23.57656 -21.79169 -20.09143 -18.56757 -18.44353 -17.04132 -16.71503 -16.52423 -15.98381 -15.51332 -15.42962 -14.64518 -14.51070 -14.45081 -14.40344 -14.26267 -13.73353 -13.36031 -13.20496 -12.60817 -12.50162 -12.10485 -11.92032 -11.63000 -11.41117 -11.32350 -11.22193 -11.05220 -10.60062 -9.81453 -8.95511 -8.19349 -6.33417 0.11609 0.52540 0.73867 1.21569 1.39164 1.41974 1.50278 1.93511 2.36039 2.41521 2.96708 3.10186 3.21477 3.99340 4.10033 4.33425 4.36395 4.57752 4.60106 4.65522 4.79515 4.80841 5.02939 5.08586 5.28615 5.31322 5.38287 5.40187 5.55166 5.74798 6.05017 6.07788 6.20568 6.22028 6.28070 6.78848 6.92702 7.34910 8.88621 Molecular weight = 243.10amu Principal moments of inertia in cm(-1) A = 0.046100 B = 0.003991 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.235901 B = 7013.938217 C = 7255.851170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.027 4.027 3 C -0.298 4.298 4 C 0.630 3.370 5 O -0.555 6.555 6 N -0.640 5.640 7 C 0.114 3.886 8 C -0.122 4.122 9 C -0.111 4.111 10 C -0.070 4.070 11 C 0.058 3.942 12 C -0.531 4.531 13 H 0.051 0.949 14 C 0.006 3.994 15 N -0.929 5.929 16 Si 0.963 3.037 17 H -0.272 1.272 18 H -0.278 1.278 19 H -0.266 1.266 20 C -0.119 4.119 21 C -0.124 4.124 22 H 0.108 0.892 23 H 0.118 0.882 24 H 0.115 0.885 25 H 0.430 0.570 26 H 0.162 0.838 27 H 0.131 0.869 28 H 0.011 0.989 29 H 0.002 0.998 30 H 0.266 0.734 31 H 0.113 0.887 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.432 1.405 3.662 25.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.029 4.029 3 C -0.301 4.301 4 C 0.420 3.580 5 O -0.434 6.434 6 N -0.285 5.285 7 C 0.021 3.979 8 C -0.142 4.142 9 C -0.130 4.130 10 C -0.071 4.071 11 C 0.021 3.979 12 C -0.569 4.569 13 H 0.069 0.931 14 C -0.192 4.192 15 N -0.568 5.568 16 Si 0.788 3.212 17 H -0.197 1.197 18 H -0.203 1.203 19 H -0.191 1.191 20 C -0.137 4.137 21 C -0.144 4.144 22 H 0.126 0.874 23 H 0.136 0.864 24 H 0.133 0.867 25 H 0.269 0.731 26 H 0.180 0.820 27 H 0.149 0.851 28 H 0.029 0.971 29 H 0.021 0.979 30 H 0.075 0.925 31 H 0.131 0.869 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -24.872 1.070 3.044 25.080 hybrid contribution 0.963 -0.495 -0.055 1.084 sum -23.909 0.575 2.988 24.102 Atomic orbital electron populations 1.19590 0.79623 1.05892 1.06254 1.23754 0.94688 0.91470 0.93021 1.20216 0.92030 1.09257 1.08587 1.15041 0.83861 0.77702 0.81382 1.90874 1.69748 1.44452 1.38348 1.43018 1.04613 1.54485 1.26401 1.17573 0.82508 1.03672 0.94194 1.21045 0.92979 1.02550 0.97605 1.21011 0.94239 1.00361 0.97375 1.20449 0.96749 0.96137 0.93722 1.18093 0.87501 0.96187 0.96142 1.21359 0.91893 0.92735 1.50939 0.93056 1.25894 0.97597 1.01139 0.94588 1.70065 1.04515 1.31123 1.51138 0.85525 0.77204 0.79410 0.79086 1.19732 1.20294 1.19106 1.20928 0.93291 1.01304 0.98219 1.21019 0.94191 1.01724 0.97466 0.87416 0.86405 0.86706 0.73060 0.82031 0.85114 0.97060 0.97922 0.92500 0.86863 0.85985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.21 10.32 70.18 0.72 0.51 16 2 C -0.03 -0.42 14.13 31.12 0.44 0.02 16 3 C -0.30 -6.92 13.62 30.01 0.41 -6.51 16 4 C 0.63 18.93 7.39 85.49 0.63 19.56 16 5 O -0.56 -21.91 14.77 -4.10 -0.06 -21.98 16 6 N -0.64 -16.35 5.33 -310.31 -1.65 -18.00 16 7 C 0.11 3.71 6.28 38.18 0.24 3.95 16 8 C -0.12 -3.74 9.96 22.40 0.22 -3.52 16 9 C -0.11 -4.26 9.69 22.25 0.22 -4.04 16 10 C -0.07 -3.20 5.07 -19.84 -0.10 -3.30 16 11 C 0.06 3.16 5.10 29.10 0.15 3.31 16 12 C -0.53 -31.28 9.09 25.60 0.23 -31.05 16 13 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 14 C 0.01 0.36 5.46 84.65 0.46 0.82 16 15 N -0.93 -56.75 13.29 21.45 0.28 -56.46 16 16 Si 0.96 45.49 29.54 68.60 2.03 47.51 16 17 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 C -0.12 -5.13 9.69 22.25 0.22 -4.92 16 21 C -0.12 -4.78 8.65 22.40 0.19 -4.59 16 22 H 0.11 0.18 8.14 -2.38 -0.02 0.16 16 23 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 24 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 25 H 0.43 7.17 8.78 -92.71 -0.81 6.36 16 26 H 0.16 3.48 8.06 -2.91 -0.02 3.45 16 27 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 28 H 0.01 0.63 8.08 -2.39 -0.02 0.61 16 29 H 0.00 0.14 8.08 -2.38 -0.02 0.12 16 30 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 32 H 0.12 4.74 6.42 -2.91 -0.02 4.72 16 Total: -1.00 -76.33 294.71 4.96 -71.37 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.33 Total: 7.30 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 4.03 Total: -29.75 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -1.37 Total: -74.47 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.06 Total: -21.98 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -76.33 4.96 -71.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178220435.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.248 kcal (2) G-P(sol) polarization free energy of solvation -76.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds