Wall clock time and date at job start Sun Mar 29 2020 23:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47120 * 2 1 4 4 N 1.40080 * 126.14749 * 85.91848 * 3 2 1 5 5 C 1.30933 * 108.51918 * 179.97438 * 4 3 2 6 6 C 1.39425 * 108.62802 * 0.02562 * 5 4 3 7 7 C 1.36387 * 126.15038 * 265.60648 * 3 2 1 8 8 C 1.47831 * 126.34907 * 0.03801 * 7 3 2 9 9 C 1.40102 * 119.62163 * 158.62667 * 8 7 3 10 10 C 1.38632 * 119.44782 * 179.97438 * 9 8 7 11 11 C 1.38331 * 118.71166 * 0.02562 * 10 9 8 12 12 C 1.40701 * 119.22020 * 359.97438 * 11 10 9 13 13 C 1.41363 * 119.75658 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99904 * 344.98257 * 13 12 11 15 15 C 1.40002 * 119.99820 * 164.98508 * 13 12 11 16 16 N 1.30754 * 120.00014 * 352.49615 * 15 13 12 17 17 Si 1.86798 * 119.99902 * 172.49375 * 15 13 12 18 18 H 1.48501 * 109.46963 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47046 * 119.99776 * 17 15 13 20 20 H 1.48498 * 109.47268 * 240.00436 * 17 15 13 21 21 N 1.32373 * 119.62732 * 338.35201 * 8 7 3 22 22 H 1.08998 * 109.46936 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47326 * 300.00100 * 1 2 3 24 24 H 1.09005 * 109.47238 * 60.00148 * 1 2 3 25 25 H 1.09001 * 109.47474 * 239.99735 * 2 1 3 26 26 H 1.09005 * 109.47238 * 119.99852 * 2 1 3 27 27 H 1.07992 * 125.68573 * 180.02562 * 5 4 3 28 28 H 1.07998 * 126.07810 * 179.97438 * 6 5 4 29 29 H 1.07989 * 120.27601 * 0.02562 * 9 8 7 30 30 H 1.08004 * 120.64303 * 180.02562 * 10 9 8 31 31 H 1.08000 * 120.39183 * 180.02562 * 11 10 9 32 32 H 0.96999 * 119.99986 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2178 2.1871 1.1283 5 6 2.6609 3.3540 0.7328 6 6 2.7624 3.3439 -0.6577 7 6 2.3660 2.1116 -1.0980 8 6 2.3189 1.6568 -2.5038 9 6 2.2653 2.6024 -3.5362 10 6 2.2218 2.1718 -4.8533 11 6 2.2322 0.8123 -5.1087 12 6 2.2870 -0.0889 -4.0296 13 6 2.2987 -1.4805 -4.2776 14 1 2.0249 -1.8577 -5.2518 15 6 2.6653 -2.3698 -3.2603 16 7 3.1366 -1.9116 -2.1300 17 14 2.4811 -4.2107 -3.5178 18 1 1.9298 -4.4683 -4.8724 19 1 3.8090 -4.8635 -3.3920 20 1 1.5585 -4.7639 -2.4940 21 7 2.3334 0.3608 -2.7732 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.9068 4.1856 1.3764 28 1 3.0986 4.1625 -1.2768 29 1 2.2588 3.6579 -3.3080 30 1 2.1805 2.8840 -5.6642 31 1 2.1996 0.4470 -6.1245 32 1 3.3903 -2.5277 -1.4250 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240690769.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:10 Heat of formation + Delta-G solvation = 101.604430 kcal Electronic energy + Delta-G solvation = -17193.238845 eV Core-core repulsion = 14541.161921 eV Total energy + Delta-G solvation = -2652.076924 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.39301 -38.13386 -33.88830 -33.63155 -31.43086 -30.62231 -28.79343 -28.40039 -25.70779 -23.28266 -22.27028 -21.68130 -19.97159 -19.11194 -17.43616 -16.45928 -15.14724 -14.77723 -14.51970 -14.34108 -14.05558 -13.53880 -13.37170 -12.66543 -12.54231 -12.25660 -12.01925 -11.81321 -11.39930 -11.34804 -11.21634 -10.91818 -10.64530 -10.49926 -10.19760 -9.95819 -9.51779 -9.00966 -8.36882 -8.03670 -7.75977 -7.37422 -6.72355 -4.68055 1.92262 2.70349 2.99487 3.01014 3.04694 3.09255 3.27172 3.60137 3.82341 4.56492 5.18887 5.29156 5.64867 5.66566 5.76239 5.86093 5.96887 6.12438 6.18148 6.31104 6.40829 6.42481 6.56601 6.58118 6.77636 6.86932 7.07405 7.14984 7.32144 7.38093 7.52156 7.74819 7.83506 8.07505 8.40857 8.50447 8.71405 9.75684 10.11542 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.021968 B = 0.009606 C = 0.007283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.254150 B = 2914.157835 C = 3843.510249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.099 3.901 3 N -0.340 5.340 4 N -0.314 5.314 5 C 0.031 3.969 6 C -0.276 4.276 7 C 0.164 3.836 8 C 0.189 3.811 9 C -0.274 4.274 10 C -0.059 4.059 11 C -0.261 4.261 12 C 0.265 3.735 13 C -0.435 4.435 14 H 0.087 0.913 15 C 0.078 3.922 16 N -0.739 5.739 17 Si 0.908 3.092 18 H -0.260 1.260 19 H -0.273 1.273 20 H -0.271 1.271 21 N -0.479 5.479 22 H 0.068 0.932 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.170 0.830 26 H 0.071 0.929 27 H 0.174 0.826 28 H 0.142 0.858 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 2.479 1.330 3.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.021 4.021 3 N -0.122 5.122 4 N -0.137 5.137 5 C -0.152 4.152 6 C -0.306 4.306 7 C 0.034 3.966 8 C 0.044 3.956 9 C -0.299 4.299 10 C -0.083 4.083 11 C -0.284 4.284 12 C 0.139 3.861 13 C -0.467 4.467 14 H 0.105 0.895 15 C -0.145 4.145 16 N -0.362 5.362 17 Si 0.732 3.268 18 H -0.183 1.183 19 H -0.198 1.198 20 H -0.196 1.196 21 N -0.192 5.192 22 H 0.087 0.913 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.187 0.813 26 H 0.089 0.911 27 H 0.191 0.809 28 H 0.160 0.840 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.092 0.886 3.229 3.948 hybrid contribution 0.204 0.415 -1.387 1.462 sum -1.888 1.301 1.843 2.941 Atomic orbital electron populations 1.22053 0.95902 1.02039 1.01643 1.22568 0.94135 0.77474 1.07933 1.49016 1.48709 1.11987 1.02523 1.77165 1.23468 1.03558 1.09527 1.23464 1.00900 0.96032 0.94847 1.21247 1.16481 0.98121 0.94772 1.19700 0.98204 0.91136 0.87520 1.18913 0.97110 0.91162 0.88385 1.21117 1.17853 0.98135 0.92802 1.20835 0.96847 0.95324 0.95299 1.21888 1.14063 0.93355 0.99091 1.18455 0.88014 0.93648 0.85982 1.19588 1.39146 0.89493 0.98431 0.89466 1.25984 0.92729 1.01359 0.94447 1.69846 1.25971 1.36619 1.03744 0.86258 0.78900 0.81766 0.79867 1.18335 1.19826 1.19601 1.68417 1.17468 1.11207 1.22151 0.91311 0.93251 0.92460 0.81256 0.91072 0.80868 0.84026 0.87809 0.87881 0.87804 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 10.24 37.16 0.38 -2.52 16 2 C 0.10 2.07 6.96 -4.04 -0.03 2.04 16 3 N -0.34 -7.48 3.66 -57.41 -0.21 -7.69 16 4 N -0.31 -6.51 12.56 30.55 0.38 -6.12 16 5 C 0.03 0.56 11.98 -17.49 -0.21 0.35 16 6 C -0.28 -5.33 10.17 -39.69 -0.40 -5.73 16 7 C 0.16 3.66 6.80 -82.46 -0.56 3.10 16 8 C 0.19 4.51 6.67 -83.01 -0.55 3.96 16 9 C -0.27 -5.96 9.62 -38.74 -0.37 -6.33 16 10 C -0.06 -1.24 10.14 -39.40 -0.40 -1.64 16 11 C -0.26 -5.98 9.83 -38.62 -0.38 -6.36 16 12 C 0.26 6.75 6.46 -85.01 -0.55 6.20 16 13 C -0.44 -10.77 9.13 -37.73 -0.34 -11.12 16 14 H 0.09 2.03 7.86 -52.49 -0.41 1.62 16 15 C 0.08 1.84 5.45 -17.35 -0.09 1.74 16 16 N -0.74 -17.99 9.91 55.55 0.55 -17.44 16 17 Si 0.91 17.44 29.57 -169.99 -5.03 12.41 16 18 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 19 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 20 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 21 N -0.48 -12.22 5.82 -7.74 -0.05 -12.27 16 22 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.17 3.93 3.79 -51.93 -0.20 3.73 16 26 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.17 2.34 8.06 -52.49 -0.42 1.92 16 28 H 0.14 2.38 7.67 -52.49 -0.40 1.98 16 29 H 0.10 1.99 7.38 -52.49 -0.39 1.60 16 30 H 0.10 1.81 8.06 -52.48 -0.42 1.38 16 31 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 32 H 0.28 6.14 8.29 -40.82 -0.34 5.80 16 LS Contribution 278.03 15.07 4.19 4.19 Total: -1.00 -27.57 278.03 -7.17 -34.74 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -3.49 Total: 8.49 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -3.52 Total: -16.30 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.68 Total: -43.53 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.57 -7.17 -34.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240690769.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.341 kcal (2) G-P(sol) polarization free energy of solvation -27.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds